AMCG00012939 (LOC103459300,LOC104941780)


Basic Information

Item Value
gene id AMCG00012939
gene name LOC103459300,LOC104941780
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14479076 ~ 14510489 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012939
AAAAGTGTCTTATACggtgaaggaagaaaaaaaaaacactaaatccgTTTGGATTATTGGGATACTTCTCTGTCGTTGTCACGGATCTGTGCGCTTTGGGAAGAAAGGAAGACGCGATGGTATTCGTGCAGCTGGAAATGAACGTATTCATGGATTAAAGAAGCTGTTTGGGGAATCATGAGCACAGGTATCAAGAAACCACCAGTGGCGCCCAAACCTAAGCTAGTTCAGACCCAGAAGCCCTCTCCCCCTCCTGTTGCACCCAAACCGGATATTCTTTCCCAATCAGCTCCTGCACCAAAAAAAGCCAAGCCAGCAGTCGCACCTAAACCATGCTTTCCCAAAAGTGTGTTGCTCCACAACTCGAGTCCCCCCAGCTTGAAGAACACATCCCAAACCTTAACCGATGAGAAGGCCGAGCTTTCCGAAAACCTCGGGCTGCTTAATTCTAAGAACGGCCTACAGACGGAGTTCTGTAAGCTCAACTCAAATTACATCATCCCAACATGCACTTGTATCCCAGAGTGTGGTCACACCTGCCAACACACTGGGAACTCCAAAAAAACTGAGATTGTCATTGATCAGCTGGAAAAACTGGAAACCTGGCAGAATGGCAGAGCAGACAGGACAGAGTTTTCTCCTGTTCCCAGAACTAACAATTATCACAAGCACAAACATCAGGAAAGCTCCACTGCCCGGAAGGACAAGGCAGATAcctttgatccggatcagaaactGCATTCAACTGGAAGTATTGATACATTTGCCGGGAAATGCTTACTTCCTGAAGGACCACAGGCAATGGCTTACAAGCAAGTGAAAGACCTTCAAGCTAACAGTCAAATAACACTGTCTAGTGTATGTCAGCCTCGAAACATCTCTGCACACTCTGAAAACCCTGTCTGCTCCACAGAGAGTGGATGTGAGCCCAGAGAGGAGACCAGCAGGGACAGTGAACCTTTAATTTGCCCAGCAGCACCGAAGAAACCTCTTCCGGTCCCCATGCCAAGAAAGTCGAGAAAATGTGGACTTGTGAGGCAGGATTGTATTGAAAGCAACCAACTTGAGGTGAAGGACACCACTGAAAGCACAGACCAGGAGACGGATGGGAAATCTGTGAAGAACAGTCCGTTTAAGTCTCCAAAAGTTTGCATCCATACTCAGAGCGTTTCCTATTCCAGAAACCCTGGGGAAAACCAAGCACATGCCGAACTCTCCCATGGAGGAGATTCAGGTAAAAAATCAGAGAAGCCAGATCAAGTGTGTGGAGATGCCTCTGTGGGTGTACTGGAGAACATGTCCCATCTTGCTGATTGTGGAGAGGTGGAAGAGGAGGATGCGATACAGCCCCCTGCAGTGTCTGAAAGTGAGGATGCAGAGAGGACCAGCAGCTTTGTGCATGCCCCTGCTACCAGGAGCCATCTCCGGTTCAGAGCTTCCTGTAACATGCAGCTCACTGTGGCTAACACTCTTGCATTTTCTGAAGAGAAAAGCCACACTACAGACATCAACTCTCAGACTGAAAGGTCACCAAAAGTGGCCCCAAAGAAGCCACAGAGACACAGCTTACCTGCCTCTGGACTTCTGAAGAAAGAGCTTTCAGAGGAGTTGAATGAGAGGAGCCGCTGTGTGGGAGAGGGGGAGTCTGGTCCCACTAACCAAGACTGTCCACAAGAGGAAGAGCAGATTGTTCCTGTTGAGGAGGACTTGAAGCCGGAACCGCCGACGGAGAAGCCTGCATGGAGGCTACATCGCCCCATTATGCCGTTTTTTGGAAAACCTGATTCTTTAAAAACTGCCAGCACCAGGAATGTGCACGCCAAAGTGCTTAGTCTGGGCAAACCCAGAGCCAAGTCCTTCTCATCGGCAGACCTGGAACGCTCAGAGAGCTTGCCCAAGGAAGGGCAGAAGAGAAGTTCTTTCAGGAAGCTTCTAGAAATGAAACTCTCTGTGAGAAAGCTCCCAAGGTTGCTGGCCAAAAGCAGCCAGTCCCTAGACTGCACCACAGTAGCGGCAGATCCTCCTATGGATGAGTACAGAACTGCCGCCCAATACAGCCCCGTGGCAAAGACACGTGGGCAGGTGGCCAATGGCCAGTGTGAGGCTCCAATCACTGTGAATAGCAAATCGGACTTGGTGGATGGACTGAAGGCCTTGTGTTCGCAGAACCTCCTGGAGGGAAGTTTATATCAGGAGTCCCTCCCATTTCCGGACTTGGATGTGGAATATGAGAATGTGCCTCATTACGAGGAAATCCCGGAGTACATGAACTTGCCTTTCCGGAACGCTTCTGGATTACGCCACTCTGTATCACCACCTTTCAGCTGGAACAATTCCTCGAGCGTGGAAGATGCGGAGGCAGACCTGTACGAGGTTCAGGAACCTTATGAGCCCCACCTGAGgCCCACGCTGGACGGGGACCCCAGGCTGGAGAATGACCACTCGGAGGAAGAGGAAATGGCAAACAGCTCTGATGAAGATGACAACAGCTCGGCCTCCAGCAAAGGAGAGCTGGATGCGTCAGGAGATAGACAGCACGAGCTGGGAGCCAAGAGGACAAAGGTGGTCCACATCGCCAGGGAGATCATGAGCTCTGAGAAAGATTTCCGAGATGCAGTAGCGAAGGCCTCCAGGCAGAGTGGGAAGCCAGTGATTGAGGAACGCACTTTAAACCAGATTCTGTATTACCTGCCTCAACTCTACGAGCTCAACAGAGACCTTCTGCGTGAGCTGGAAGAGAGAGTGGCTCACTGGAACGACCATCAGAGGATAGCGGATATCTTTGTGAAGAAGGGTCCCTACCTCAAGATGTACTCCACCTACATCAAGGAATTCGATAAGAGCATTGCTCTGCTGGATGAGCAGTGCAAGAGGAACCCAGGCTTCGCCGGTGTGGTGAGGGAGTTCGAGATGAGTCCCCGGTGCGCCAACCTGGCCCTCAAACACTACCTGCTCAAGCCGGTGCAGAGAATCCCACAGTACCAGCTGCTGCTCACAGATTATTTGAAGAACCTCCATGAAGATTCCTCAGACTACAAAGATACACAAgcgGCTCTCAGCATCGTCATCGAGGTGGCAAACCATGCGAATGACATCATGAAACAAGGGGATAACTTCCAGAAGCTCATGCAGATCCAGTACAGTCTAAACGGGCATCATGAGATTGTCCAGCCAGGCCGGGTTTTCCTGAAAGAGGGGACTCTGATGAAGCTGTCTCGGAAGGTCATGCAGCCCAGGATGTTCTTCCTGTTTAATGACACCCTGCTGTACACCACCCCTGTGCAGTCCGGAATGCATAAGCTAAACAGCATGCTCTCTCTGGCAGGAATGAAGGTGAGCAAACCGACTCAAGAAGCCTATCAAAACGAACTGAACATCGAAAGTGTGGAGCGGTCATTCATTCTGTCAGCCAGttcTGCCAGAGAGCGAGATGCCTGGCTACAAGCCATTTCCAAAGCTATTGACGACTACACCAGGAAGAAAATCACATTCTTTGCAAGCAAGAGCCTGGAGGAGGCTGACTCGGTGAGCATGGACAGTGGGGCTCCTCTCGGCTCCAAGGCTCCCATCTGGATCCCTGACCTGCGTGCCACTATGTGTATGATCTGCACCTGCGAGTTCACACTCACCTGGAGGAGGCACCACTGCCGGGCCTGTGGCAAGGTTGTGTGTCAGTCCTGCTCTTCAAATAAGCATCGCCTTGACTACCTGAAGAACCAGTCTGCCAGAGTGTGTGACCAGTGCATTGTCAAGCTTCAGCAAAACGCAGATGAAGCAGTCCCTGCAGCCGTGTCTCCCTCGGGCAAGTCCTCCACCGGGGCCTTCTCCTCTGTGCTCATCAGCATTCCCTCGGGCAGGAAGCAGAAGAAGATCCCAGCAGCCCTCAAAGAAgTGTCGGCAAGCACCGAGAACTCCTCCATGAGTGGCTACCTGCACAGGTCCAAGGGCCACAAGAAACCCTGGAAGCGGCTGTGGTTTGTCATCAAGAACAAGGTCCTATACACCTATGCTGCTAGCGAGGACGTGGCGGCCTTGGAGAGCCAGCCCCTGCTTGGCTTCCACCTGAAGGAAGAGCGAGCCGACCAGATGCTGCAGTTCAAGCTCTACCACAAACACACGCTGTTCTACATATTCAAAGCGGACGATGCCCCGACAGCCCAGAAGTGGATGGAAGCTTTTCAAGAAGCCACTGTCCTGTAAGGCTGTGGTCGCATACAGGACTGACGAAACCAGCGCACAGCATTCCTCTGCACGGACACCGGCCTTCATGACCACTGCACAGACACGGAGGCGTTTGTGGTCGTGGTGGCTCGCAAAAAGTCATTTTTAGTGATGTCTCCCCTCTTGTACATATTCAGACATGTGACAACCGTGGGGTTCTGACAGTGGAGGAACATAAAGGCAGGCTGTTCTTTTATAGCTTCCCCAGGTCCTCTATTCAATGTATACCCAGTATTAGCTGTGAGACACTTGGCAGTGAAATCACTTGGTGCCTTTAAGCCTATTTAAGCCTTCTTCCTAGACTACAATGCACTTGCCATTTCCTGGTGCTTTAGGATATAGTGTACATGTACATAATTCAAAGTAAGCAGCACTcatggctgtttttgttttattttagaactCTTTAtctaatttcatattttaaatgtaggcCCAGGTGGCTTATGGTTGTGTAAAAAGACGATCATGAAGTTTGCTGACCGTATGAGTGCTGCTTCAGTGTCAGGTGCTCTGCGGACTAACCCAAGTGGACTTGGTCAGGTGGATAGTATGCAGGTGGATGTGTTGTAATGTCCCACTCTCAGGAAAAGGAAGAATACCTTGCAGACCACTTAATCCAGTAGCCCTCTGTAGTTCTGACTCGTAGGAATGCCATCGCCACTTCCTATGAGAATCGCATCTGCAGGTATACGGATCCTGTCTGTAATACTCTGCAGTGCCAGTGGTATTTATGTTTGACagatgtttaaatgtacatctgttacttatgaaatgtaaatgcaatcaattttatttttctaatgagTTTTTTGAAAGAGATAATCTTTTCTACAAACCATATATTTGACTTAGTTTTGTTTCCACTTCAATATAATGGTATATAaccattatattgtttttaaacccCTTGGAAAATGGCATactatgatttgtttttttgatatTCCTAACTGCAGGGTATTTGAAATTTGACATTGACAAGGATGGGATGTTCCTTGATCTAAGAGAGCTCTAAgcagacttttttattttttttaatgttactaaATTATTCTTAAGTGTGCCGCCTGAAGGGAGAAAGCTGAAGATGTCTGGTCGAATAAGTTTGTGTTCTACATTCATTGGGCTATTCTGAGCAACACCAGCAcctgaatttccttttttttttttttaaacccagccGATGTAATtatctgtaatgtatttatactttgttttttgtttttaaattgtataggACTGTTTACATCTTGTATTTACACTTGCTAATTTGACCATCATGGATTGCACTATGCTGTATAGATGGAAATTTTGGAAAGACAATCCATGCGGGTGGGTTAATTCCGTGTCATTCATGTATCACTACATGCGTTTGTACAGACCAATGTATAAAAACTCTCTGAACAAGTATTTGGTTGAGATCATACTGTCTCCTTTACACTTGCTgtcttaaaacattttgttatagttttgaactgtttttcttctctccataGATCTAGTTTGTCACTTGGaccacaatttatttatttcacttttttttttttcactagaTTAACTACTAGAGATGA

Function

NR:

description
PREDICTED: FYVE, RhoGEF and PH domain-containing protein 6-like

GO: NA

KEGG:

id description
K05724 FGD5_6; FYVE, RhoGEF and PH domain containing 5/6

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012939 True 5795 mRNA 0.48 20 14479076 14510489

Neighbor

gene id symbol gene type direction distance location
AMCG00012936 NA coding upstream 27973 14433803 ~ 14451103 (+)
AMCG00012935 NA coding upstream 59818 14405558 ~ 14419258 (+)
AMCG00012934 NA coding upstream 84007 14366098 ~ 14395069 (+)
AMCG00012928 NA coding upstream 138174 14332782 ~ 14340902 (+)
AMCG00012930 hal,LOC103041200,LOC107670217,LOC107740873,LOC108275357,LOC102785645 coding upstream 154203 14315841 ~ 14324873 (+)
AMCG00012942 NA coding downstream 64104 14574593 ~ 14580228 (+)
AMCG00012941 NA coding downstream 142355 14652844 ~ 14681647 (+)
AMCG00012947 NA coding downstream 270076 14780565 ~ 14793388 (+)
AMCG00012946 NA coding downstream 287223 14797712 ~ 14811683 (+)
AMCG00012945 NA coding downstream 324001 14834490 ~ 14851076 (+)
G40989 NA non-coding upstream 81221 14397597 ~ 14397855 (+)
G40986 NA non-coding upstream 83177 14395576 ~ 14395899 (+)
G40963 NA non-coding upstream 134595 14340946 ~ 14344481 (+)
G40920 NA non-coding upstream 292940 14185240 ~ 14186136 (+)
G40846 NA non-coding upstream 490988 13986950 ~ 13988088 (+)
G41054 NA non-coding downstream 114763 14625252 ~ 14625850 (+)
G41058 NA non-coding downstream 118094 14628583 ~ 14630610 (+)
G41075 NA non-coding downstream 164576 14675065 ~ 14677245 (+)
G41082 NA non-coding downstream 179621 14690110 ~ 14690674 (+)
G41084 NA non-coding downstream 194471 14704960 ~ 14705185 (+)
G40999 metap2,LOC108428789,LOC100194705 other upstream 45875 14428313 ~ 14433201 (+)
G40629 NA other upstream 1943147 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 1978674 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3937116 10540728 ~ 10541960 (+)
G40224 NA other upstream 4034629 10436907 ~ 10444447 (+)
AMCG00012940 LOC107748465 other downstream 6294 14516783 ~ 14529806 (+)
G41059 NA other downstream 121868 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 570930 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 787473 15297962 ~ 15317344 (+)
G41264 hbp1,LOC108230206,LOC107701066 other downstream 966690 15477179 ~ 15818342 (+)

Expression


Co-expression Network