AMCG00012940 (LOC107748465)


Basic Information

Item Value
gene id AMCG00012940
gene name LOC107748465
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14516783 ~ 14529806 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012940
ATGGAGAGCACATCGCAGAGGATACAGCTCATACCAGCAGACGGCAGCATGGCATTGGCACATCGCATACAGATTGTCACGGACCAGCAGACCGGGCAGAAGATCCAGATCGTCACAGCGCTGGATCAGGCGGGCGCAGGGAAACAGTACATCTTGACCAACACAGATGCCTCTACACAAGGCAAAGTGATCCTGGCCAGGCAAGAGCACTCCCAGGGAAAGGTCATCCTGGCTTCTCCTGATGGCTCGGGCGTCAACCAGTTGCTGTTCACGTCCCAGGACATGGCCACCCAGCAGATCCAGATCGTGACAGACTCTGGCTCTGCGGATCTGTCTCCTTCCAAACCGATCATCGAGTATTGTGTGGTGTGTGGGGACAAGGCTTCAGGGAGACACTACGGTGCAGTGAGCTGCGAGGGCTGCAAGGGATTTTTCAAAAGAAGCATCAGAAAAAACCTAGTGTACACCTGCAGGGGCACGAGGGAGTGCGTCATCAACAAGCACCATCGCAACCGCTGCCAGTACTGCCGGCTGCAGCGCTGCATCGCCTTCGGGATGAAGCAGGACTCTGTGCAGTGTGAACGGAAGCCTGTCGAAGTCTCCCGAGAGAAGTCTGTGAACTGTGCCGCCTCAACTGAGAAGATCTACATCCGGAAGAATCTGTGCAGTCCCCTTGCGGCCACGCCCACGTTCGTGACGGACAAGGAGACCGCGCGGTCTGCCAATTTGCTGGAGTCAGGAATGCTCTTAAACATCCAGCAGCCTTTCCCAAAAGTGGAAAACACAGTCATGATGTCATCACCGGAAAAGAGCGACTCGTTTCAGGGCGATTTAAGTACACTGGCCAATGTTGTGACGTCCCTTGCACACCTCAGCAAGACCAGAGAGATGAGTGACAGCAGCGCAGACCTATCGGTGATTGAGACATTAAGCAATGGCGACAATTCAATAGCAGAAATTCAAACGGAAGAGCAAACCAGTGATATAACAAGGGCATTCGATACTCTTGCTAAGGCCCTGAACCCGGGAGACCATCCTCACGTCGAGCACATGGAGGCCAGCATGCACCTCGTGTCTGGAGACCAGTCGGGCAGCGTGCTGGAGATGGACGGCCCTCTGCTGTCGGACATTCACGTGGCTTTCAAGCTCACTATGCCTTTGCCAATGCCTGAGTACCTCAATGTTAATTACATCTGTGAATCCGCTTCAAGATTGCTGTTCCTCTCCATGCACTGGGTTCGCTCAATTCCTGCTTTCCAGGCACTGGGGCAGGACAATGACACCAATCTGATGAAGGCCTGCTGGAACGAGCTTTTTGCCCTCGGTCTGGCGCAGTGCTCACAGATTATGAACGTGGCCACCATTTTAGCTGCTATTATAAACCACCTCCAGAGCAGTTTACAGGAAGATAAACTCTCACCAGAAAGGGTGAAGATTGTAATGGAGCATATCTGGAGAATGCAAGAGTTCTGTAACGGCATGGCTAAGCTGTCTCTTGACGCTTATGAGTACGCGTATCTGAAAGCGATCGTTCTCTTTAGCCCTGATCATCCAGGTATCGACAATATCCTGCTGATTGAAAAGTTCCAAGAGAAAGCGTACATGGAATTGCAGGACTACGTCACACGGACATACCCAGAAGACACTTACCGGTTATCAAAGCTGCTCCTGAAGCTGCCAGCGCTGAGGCTGATGAGCGCCGCCATCACAGAGGAGCTGTTCTTCGCCGGCCTCATCGGCAACGTGCAGATCGACAGCATCATCCCCTACATCCTCAAAATGGACTCCGCCGACTACAACAACCAGATCATCACCTCCATCGTAGTAAACGATGTTAAAACTGGAGCTCTTGTTGGAGTAGACAAATACGGGAACAAGTATTATGAAGACAATCGGTACTTTTTTGGCCGCCACAGATGGGTCATCTACACTGAAGAGATGAATGGCAAAAGAACTGTCTGGGAGGTAGATGGAAGCATGGTCCCACCTGAATGGCACCGCTGGCTGCACTGCATGACCGCCGACCCGCCGACCACACACCCCCTGCAGCCCCGCAAGTTCATCTGGCAGGATCACCGGTTTAACCTGAGTGGCACGGCAGCCCAGTACGTGCCCTTCTCCACCACCCGCAAGAAGGTCCACGAGTGGGTCCCACCACCGCTGTCCAGCAAGTGAGAAACCTTGCCTGCGTagcccatatatatataaactgtttgGACATGATCCTGCGGATACTCTGTGCTTTCCAGTCTCACTTCTGAtactaattaaattatatatacaagtAA
>TU51114
TCTCTGCCAGTGTTGCTTCCGGCCTAAAATGGCGGAGTATGTGCAGGTCGCTCGGAGGGCTGTGGGACAGCTAGGAGGTCATGGGGGAATACGCGGTTTGTTATATCAGCTTTTGagAGTAAACGATGTTAAAACTGGAGCTCTTGTTGGAGTAGACAAATACGGGAACAAGTATTATGAAGACAATCGGTACTTTTTTGGCCGCCACAGATGGGTCATCTACACTGAAGAGATGAATGGCAAAAGAACTGTCTGGGAGGTAGATGGAAGCATGGTCCCACCTGAATGGCACCGCTGGCTGCACTGCATGACCGCCGACCCGCCGACCACACACCCCCTGCAGCCCCGCAAGTTCATCTGGCAGGATCACCGGTTTAACCTGAGTGGCACGGCAGCCCAGTACGTGCCCTTCTCCACCACCCGCAAGAAGGTCCACGAGTGGGTCCCACCACCGCTGTCCAGCAAGTGAGAAACCTTGCCTGCGTagcccatatatatataaactgtttgGACATGATCCTGCGGATACTCTGTGCTTTCCAGTCTCACTTCTGAtactaattaaattatatatacaagtAATGTGTTTGAGTAATTATTGCAGTTTTGTGTCAG

Function

GO: NA

KEGG:

id description
K08543 NR2C1, TR2; testicular receptor 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012940 True 2288 mRNA 0.52 16 14516783 14529773
TU51114 False 615 TUCP 0.50 4 14528162 14529806

Neighbor

gene id symbol gene type direction distance location
AMCG00012939 LOC103459300,LOC104941780 coding upstream 6294 14479076 ~ 14510489 (+)
AMCG00012936 NA coding upstream 65680 14433803 ~ 14451103 (+)
AMCG00012935 NA coding upstream 97525 14405558 ~ 14419258 (+)
AMCG00012934 NA coding upstream 121714 14366098 ~ 14395069 (+)
AMCG00012928 NA coding upstream 175881 14332782 ~ 14340902 (+)
AMCG00012942 NA coding downstream 44787 14574593 ~ 14580228 (+)
AMCG00012941 NA coding downstream 123038 14652844 ~ 14681647 (+)
AMCG00012947 NA coding downstream 250759 14780565 ~ 14793388 (+)
AMCG00012946 NA coding downstream 267906 14797712 ~ 14811683 (+)
AMCG00012945 NA coding downstream 304684 14834490 ~ 14851076 (+)
G40989 NA non-coding upstream 118928 14397597 ~ 14397855 (+)
G40986 NA non-coding upstream 120884 14395576 ~ 14395899 (+)
G40963 NA non-coding upstream 172302 14340946 ~ 14344481 (+)
G40920 NA non-coding upstream 330647 14185240 ~ 14186136 (+)
G40846 NA non-coding upstream 528695 13986950 ~ 13988088 (+)
G41054 NA non-coding downstream 95446 14625252 ~ 14625850 (+)
G41058 NA non-coding downstream 98777 14628583 ~ 14630610 (+)
G41075 NA non-coding downstream 145259 14675065 ~ 14677245 (+)
G41082 NA non-coding downstream 160304 14690110 ~ 14690674 (+)
G41084 NA non-coding downstream 175154 14704960 ~ 14705185 (+)
G40999 metap2,LOC108428789,LOC100194705 other upstream 83582 14428313 ~ 14433201 (+)
G40629 NA other upstream 1980854 12488575 ~ 12535929 (+)
AMCG00012894 gdi2,LOC107585127,LOC107560733,LOC107754057,LOC107694307,LOC107757239 other upstream 2016381 12453239 ~ 12500402 (+)
AMCG00012848 NA other upstream 3974823 10540728 ~ 10541960 (+)
G40224 NA other upstream 4072336 10436907 ~ 10444447 (+)
G41059 NA other downstream 102551 14632357 ~ 14633413 (+)
AMCG00012954 NA other downstream 551613 15081419 ~ 15136729 (+)
AMCG00012961 NA other downstream 768156 15297962 ~ 15317344 (+)
G41264 hbp1,LOC108230206,LOC107701066 other downstream 947373 15477179 ~ 15818342 (+)
AMCG00012973 NA other downstream 1036687 15566493 ~ 15569943 (+)

Expression


Co-expression Network