AMCG00012943 (socs2,LOC107590271,LOC107732999)


Basic Information

Item Value
gene id AMCG00012943
gene name socs2,LOC107590271,LOC107732999
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14757801 ~ 14772607 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012943
CTGGCTGAAGTGTCCCTGACGGGTTAGAGCCATCAAAAAAtagacacataaataaataaatcgacaCAATTACgagtacaataaatacatgaaaacacatACACTAAACGACAAATGCAAAGACATACAGATCTGCCGCGCAGTCCGAGAAGACGTCCGCAGGCGCGCCGGGGCTGTTAGCCGCTGCCGTCACGGCGCTGTTCGCCCGAGTGTGGGGGAGCGCCGTCGTGCTTTATATGAGTCTCGGCTCTGTCGTCCATTGTCCAGTAGATACTTGTGCGGCAGCCGGATGGGTGCAGTCCTGTGTCGTCGACGGGCAGTGCAGCGCCGCGGCGGGATGTCTCGGTGGGCATGAAGCCCCGTGCCCGCTGCCCCCCGCTGCCCCCGCACGCGCCGCAGGTGGAAACGCACATTTTCCCTGAAATTGCGAGGCTCTCCTTGGAAGTTttttcacttattattattacatttggtGTGTGAATGTGGAATACATCTCAAGAAGGAAAAAACCTACAAAGTTTGTCGGATGCTGATCGGTGGATGCCAGGGAGCTACCCAATGACCTGCCATTCTCCTGACTCCACCGAAACCATAGAAAACCACCGGAGATCGGACACGGAATCCAGGGCGCTAGATAACGACCAGAGCCGCATTGCAGCAGCCATGAGAGACCTGAAAAAGACAGGTTGGTACTGGGGGAGTTTAACTGCCAATGAAGCTAAAGAGATACTCCAGGACACAGCCGAAGGCACCTTCCTTGTCAGGGATAGCTCACAGAGGGACTACCTGTTTACAATCTCTGCAAAAACGTCAGTGGGGCCAACCAACCTGCGCATAGAGTACAGGGACGGCAAGTTCAAACTGGACTCTGTGCTGTTCATTAAGCCAAAGTTGAAGCAGTTTGACAGCGTTGTGCACCTAATAGAACACTATGTGTTTCTATCGAAAACTTCAAAAGGCTCGGAGTCCATTCGTCCACCCAATGGCACCGTGCAGCTCCTGTTGACCAAGCCAATTTATGCATCGACTCCCTCGCTCCAGCATCTCTGTAGGATTTCTATTAACAAGACAACCAAAAGGATTCAGGAACTGCCTTTGCCTAACAGACTCAAAGATTACATTACAGACTACACTTATCATGTTTGATAAGATGCATAAATAACTCAGTACATGCATTCAGAACCTGTATAATACCTGTTTtaatgtgctgttttatttttttgtactgtagCATTATTAGGGAAAAGTGTTTTCAAATCATACTGCTTTTTGGTGAAGTTAACACAAATTTAACTGCAAGCAATATTCAAAACTatacaagtacatttttaaacgttattttttattattattattattattattattattattattattattattattactattattattattttgtatcttgCATTAGCTATATCAGTTTTACCTGAGATGAAATGTTGGCATTTCATTGGCCATTCAATATTATCAGTATTTGGTGCGGACTTGTTGGTCTCGTTTCAAAGTTTCACTGCATTTGTGcctcaaattaattaattcccaTGTTTTTGATTGtcaatagaataaaaaaaagagatacTGACAAGCAATAGCTCATAAACAAAGGTTTAGTCTGCTGTGCCAAATACTGCTCACATGTATTCGCCAAGTCTGATTTTGTTGATTTCATCTGCTGACAATGCAGATTTCTCTTTTAAACATTGgcaaaaagacatttaaatgtcacaatagccattttaattgaaaaactatttgtacacatttgaaatctttatttaatctcaGGGAGGCTGATACTTTTACAGTAAGTGATGTGATTTAATTAGATAACTGTGTTAAACCAGTACAGTGTCTGAAGCTGTTACATTGAAAATGGCCAAACAGCAGGCTCCCAGTGCCATTTTGGAGAAAAACATCAGCACCTTAAACCAGAAGGCTTTCATTTCACCATCTTCCTTCAGATGTCCGTCTCTTACAGGGGACCTCCAGATTCAAGGGAGTTATCAaccattttatttcacacttcAGTGTGTTGAAGTAATGCAGGACAGTGAGAGCCCTCTGGCTGAGTGTTTCTCCACAGAATGCAGGTGAAATGCAACCGGCAATGTTTTTCGATGATAAAATTAAAACGACACAAGACAAAATATGTTGTAAAGGCATATGCCGAGGCTGTGCAAATACAAAGAGGAAAAATACTGCGCATAACTGTGAAGTTGTTTAGGCCCTGAACCCATCGTATACATAATCATAAGTAATTAATCTGCTAGACGGGTATTGTGGAAGGAAGTCCCAAGGAATGATCTGTATTATTCCTCGTTCTTCATTACAGTGATTGTTTGCGTGTTGCAATGCTCACTGatatgagatttttttttttttttggggacTGAGCtggttttttttctctctgtcatcGTATCTGCAATACAGAAAAGCAGAGGAACTTGGATTTCAGTATTATTATCAGGGTAAAAATAAGTATGTTTACATGATGAGAAATattcagcaaaacaaatgtattcaagaAACTGTTTCAGAAAAGTGTTTCTTTGAAAAGGCCAGTTGCCGGTTGCATGACAAGGCAGCTACAGTTCTGTTAAGCTGCCTTTTCATGCATGTTGGCAATTTAGTCTTACCCCTTTAAATCTGTCAGTTAAAGCACAGTATTTGGCATGACTGAAATGTACACGACAACAAAGCTTATGAGCGCCACAGATCTGGAAGACACAGggtacagtttgtttttggcATCGAAACAGAACTTTCTAGTTGGATGTTTCCTGGAAATAGTCTTTTGGAATTTTCTGGTACAACTTCCCTAAACCATGTTCTTGTGATCTGTGATACCTGAGTACATTTTTGGAAGACAGTTTTCTCAGATTTCTAATGCTCATGTAACCATACTCAGTGTCAAGTGTTCTGCAGTTAAACATGAGAgatcaatattatatatatatatatctttctaaGAATAGCACACCAATGTTGGCATTATGTGGGCATAAGGTAAAGAAATTCCTTTCTCTAAAAAGTGATGTTTGGTGGTATTCAAATTTCTACGTGGAAACTCTAAAGTATAGAAATGGGAAAGACATTGACCAAGCAGCATTGCATGTAAAGATTACTGGTGACAGCCTAAAATGTGAGAGCAGCATTTGAAGGGTTAATGTGCTGGTTCTCCGGGATCAGTGCAATATAAAGAGGTGTGTGCGTTATTTTATACTGAAATTGTAACTGTGCATCCAAAAGGTGTCCTTAAATACACTTACTGTATCAGTAGACACTCTGATGTTTGATTTCACCGTTCATGAAGTCAAGGACCTATTTTTAACACTATTGGCTGAAGATCAGATGCAGTACTGTAAATGCTTAGTGTAATCCACTGTGATTTCCTGATCACACAAATATAATACCTGGATTTCTTGGAGTTGTAACGGGGCTCACAGTGTCTGAGGTCATTAATGTGACGTCACCCCTCTCCGAGCTGGGTAGAGCATACAAAACCCCCATGGCAGGGGACCAGTCTCTAGGCGTAGTGGTGCGTTGCTCTGCTGGGGTGCATGAGATGGCGTTTCAAATGAGAGCAGGGGGCTCTGGTCCACACGCACTACAGTGGCATAGTCTTGGTCTTGGACTCAAACATGAGCCCATTTACCTGTTAATCTCCGATCATTTGGCCCTCAGTCAAAATGTAAGGTTAATGTTTTtgatctgtacattttaaacctgGTCACAGCACAAAACATTCAGATTTAATCTGTGCGTTGAACGTCtataataaatgaaatgatAAGCAGCCCCTTTCACCCTGCTGCGTGACTTCTCTGTTGTTCTCATTATTATATGACTTCCAGATGATGTGAAGAGATTGAAAGGGAAGTAATTTTAATTCTGAACACATTGACTGTAGTCTGtcacttaaatgtaaaataaatgaaaccttatAACTAATAATCATTATTCCAGACAAATTTTAATGTGCCAGGTGCAGTAGCTCCTGTTCTTATTCATGCTatagcattttgtgttttttttttttttggtggctTTAATACCTTTAAGTAAACAGACACTGAGGTTCTCAGACACTTACATCTCATATTTCTATAGCAAGAGTACTGTGTCCTTGCTATATGACCTCAATCATGTCCAAAGCTGTAGAAGAGCAGGTCTCTGTGAGTTATGAAATAAGATTAGCATTTTCTCtgcatattaaataattaactgattACAATAATCCTTTGGCAGAAGTGGAATAATGGCTGTTGgagcaaatataaaaaaaaatgtaatatgttttcGGAACCTAAATTAATTCCTTATACTACTTGCTAAGGGGGTAAATTGAATTCACAGTCTGTGACAGATTAGAGTATtctttgcaatacattttcagtttaagatattttgttttgtattaagtatttgtGGATGCCCTAGCTTTTCGTGATTTTTTtgagaataataaaacactggcACTTCGCTTGAAATCCCCCCGAACAATGCGAGCTCCGATCCATATGAAAATTCTGTGATAGTGGTGAAATATACATATGTGCCGGATTCCTTATTTCGTTTCACCCAGgaatttaatttcagtgctTCAATCAATACACATCGACCCTGTTAATTAGCCAGATTATCACAGATCTCTGTGGAGTAAATCTCACGATGTACAGTATGAATTATAAGCAGTCATTTTCAAGATCTGCAGCACATTATCTTGTCCATATGCAATGATGCCAATGCTTTCTTAGCTTCCACAGCTGTTCTTTTTCTTAACTACAGAGAGCTACAGGCTTAGAATGCAGACCAAGGGTGGAGATTGTGCAAAAGGTTTCCAtactttttgtctgtgtgtctactAATCCTAACAAATCCAACTCTGTTGTAATctacaaacagaaatggaaagtAAAACTGTTGAAGgcatatttgttatttttttacattcatttttttttctgtgccttTTGAAAATGTGATAGAACCCATCCttgtctaaattaattaaaatgaaagaatcaATGAAAacctcaatgtttttttttcttttatatttatcttgCCATTAGTATTTTAATATCAGTGGAATAAAAATTCTCTAATCCATACTTCAGTAATTCATGCATGTAAGACTGGTATTGAGACTAAAttgtctgcaaaataaaataaacaaattggaGATGTCAAAATGTTCCAAGGAATGTCTCTTGATCTTCCAGTCAGGATTTTTGTAGTAACTGCTGTTATTTACTAGCTgttgcttgttttcatttctaagAAAAATCTGTATGGTAttcttttctatttattttagaaatatatttgaacCACTCCCTCCTCAGCCTTAGGGCTGTCAATGGTGTATTGTTTCACAGCCAAAACTGGTTTGACACAGCTTTTAATCTTCCTTGAAAACACAACCGTTGTGGAAAGACTGCTTTTAGAACATTCTAGTTCATCTGCGGTAAAGTTGGGTTAAAAAGGACACCATTACATGTTGGCTTAATGTGACTTGTTGCCTTTTTTATACTTtgcttgcaaaaataaactgattattctaaaaa

Function

symbol description
socs2 Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within intracellular signal transduction; negative regulation of receptor signaling pathway via JAK-STAT; and regulation of cell growth. Predicted to be located in cytoplasm. Predicted to be part of phosphatidylinositol 3-kinase complex. Human ortholog(s) of this gene implicated in endometrial cancer and ovarian carcinoma. Orthologous to human SOCS2 (suppressor of cytokine signaling 2).

NR:

description
suppressor of cytokine signaling 2

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K04695 SOCS2, CIS2; suppressor of cytokine signaling 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012943 True 5582 mRNA 0.39 3 14757801 14772607

Neighbor

gene id symbol gene type direction distance location
AMCG00012944 NA coding downstream 55199 14675085 ~ 14702602 (-)
AMCG00012937 NA coding downstream 283220 14452415 ~ 14474581 (-)
AMCG00012938 metap2 coding downstream 324645 14424811 ~ 14433156 (-)
AMCG00012932 NA coding downstream 425999 14326065 ~ 14331802 (-)
AMCG00012933 NA coding downstream 477080 14262518 ~ 14280721 (-)
AMCG00012948 NA coding upstream 22435 14795042 ~ 14796838 (-)
AMCG00012955 tspan12,LOC102782178,LOC108228819 coding upstream 279356 15051963 ~ 15065613 (-)
AMCG00012956 NA coding upstream 305491 15078098 ~ 15079375 (-)
AMCG00012959 NA coding upstream 393343 15165950 ~ 15174248 (-)
AMCG00012958 NA coding upstream 403681 15176288 ~ 15212332 (-)
G41102 NA non-coding downstream 21172 14733735 ~ 14736629 (-)
G41088 NA non-coding downstream 40237 14717234 ~ 14717564 (-)
G41047 NA non-coding downstream 169675 14587845 ~ 14588126 (-)
G41020 LOC107748465 non-coding downstream 228028 14528154 ~ 14529773 (-)
G41030 NA non-coding downstream 247116 14508557 ~ 14510685 (-)
G41138 NA non-coding upstream 69636 14842243 ~ 14922316 (-)
G41191 NA non-coding upstream 302827 15075434 ~ 15077820 (-)
G41224 NA non-coding upstream 463013 15235620 ~ 15235862 (-)
G41243 NA non-coding upstream 464683 15237290 ~ 15278312 (-)
G41369 NA non-coding upstream 793902 15566509 ~ 15569851 (-)
AMCG00012931 snrpf other downstream 413329 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 1642314 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 1851468 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 2486012 12240396 ~ 12271789 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 3895479 10857881 ~ 10862322 (-)
AMCG00012985 NA other upstream 946906 15719513 ~ 15722457 (-)
AMCG00013018 NA other upstream 1857624 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 3107618 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 3157291 17929898 ~ 18046714 (-)
G41807 NA other upstream 3403454 18176061 ~ 18191522 (-)

Expression


Co-expression Network