AMCG00012944


Basic Information

Item Value
gene id AMCG00012944
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 14675085 ~ 14702602 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012944
CACGCCGGCCCCGTGTACTGCCTGCATCGCCGCCGGCTGTTCCTGGTCCCTGAGAGAGCAGAGGTGCTCCTCCTCACCGGCCCCCTCACACGTCACTCAGACTCAGGAACAGCTTTACGTACACCTGTACTGCAGCCTCCACCCCACTTCCTGGAGCCACATTACACTCTGCAGGGCAGCCACACACCTCAAACTCTTCCTGGTTTTAGAGCTCCTCAGAAACCAGAAATACATTCCATGGAGCCGCAGGAAATAACCTACTTGGGAAAAGCTGGGTCCACCATTAAGGGAAGAAACTTATCTCAAGTTGTTAAAATAAGGCTTAAGGACAAAAGGAACTGCGCCCCAATAGAGGTACCAGTCCTGATGGCCACGGACACAGAAGTGCAGTTCTCCATCCCCAGAGTCAGCAAGGGTGTGAGGACCGTGTGTGTGGCTCTGAGGGACGGCAGCTGTTATGGTGGGCAAAGAAAAATTCAAATTACTGGACAGAGCTTTGACCTTGTGGACTCTCTTAAAATTGCAAATGAACACAAGGATCTCATATACAATGTGatAACACTGGGAGGGTTTTCGATTGTCCGTGGGAAACCCATTAATTATTATTGGCTTTTAGGTCTCATCCTTGTTTTCATGCCTTTTATTCTTCTAGCCATGTTCTGCTTCAACCGAATTAAGCAGAAGCAGATGTCGAAGAAGCTGAGTGAGCAAGTGGAGCTGCTGGAATGTGACATTCGAAAGGAAATTCGGGACGGTTTTGCAGAATTACAGACAGAAAAATCAGATTTAATCGAAGCATTCGGGACTATCCCTTACTTGGACTACAAACATTTTGCCATCAGAACGTTCTTTCCTGAGACGGGGCCCTCACAGAACAGCTTTGTGAACGATGTCAGCCAGgaCTCTGAGAAAGTGAAACAGGATGAATGTTCTCAGGCCATATCTGATCTGATTCACGATCAGCCATTCCTAATCACCCTGGTGCACACTCTGGAGGAGCAGAAGAAATTCGACATTAAACAGAAGTGTATGTTTGCCTCTCTGCTGAGCATCGCCCTGCACAGCGACCTTGTCTACCTCACCAGCGTGATGGAGGACCTGCTGATAGCTCTCATGGACCAGAACAGCAATGCGCAGCCTAAATTGATGCTGAGGCGCACTGAGTCCATTGTAGAGAAGCTGCTGACGAACTGGATGTCTATGTGCCTGTATGGCTTTCTTCGGGAGTCCGTTGGAGAGCCCCTCTTTCTGATGGTTTCGGCGCTAATACAGAGGATCAACAAAGGGCCAGTGGACGCCATCACAGATAAAGCCCTCTACACCCTCAACGAGGACTGGCTGCTGTGGCAGGCTCAGGACTTCAACACCCTGAAGCTGAAGGTGTCGTTCCAAGTGATTCCAGACAGCGACAGTGATGCCGGCACTACACTGGACGTGAGCGTGCTGGACTGTGACACTATTGAACAGGCCAAGGAGAAGATCCTCCGCAGCTTTAAGAGCAAGTTTGGCCACCCCTACCATGTGCAGTTTAAGGACATTGACCTGGAATATGTAAGGGATCCCTCTGAAGACAGTGCCCCTCTGAGGCTCCGAGAGGTGGACCCCGGTCCCGGAGGAGTGGAGCACGGAGGGGTGAAGATGCTAAACACACTGGGCCATTACAAGattGAAGATGGAGCAAGTATAAGagtgaccaaaaaaaaacctcGAGCCAATTTATCTACCCAAAACAGTATAAGAGACGAGGACAACTACTCTACAAAATACTGCCATTTGATCGAAGCAGATTTACCTGAAACTGACGACCTTCAGAACAAAAATCCCAAGAGAAAGAAGCTGAAGCTTAAAGAGGTTTATCTCACAAAACTGCTGGGGACAAAGGTTGCAGTTCACTCTTTTGTCGAAAACCTTTTCTGCACAATCTGGGGCATGCCCAACAACAGAGTCCCACCAGCTGTGAAGTACTTCTTTGATTTTCTGGACACTGAAGCAGACAAAAGGAAGATCTCTGACCCAGATGTCTTGCACATCTGGAAAACCAACAGCCTGCCTCTGCGATTTTGGGTGAACATCCTGAAGAACCCTCAGTTTGTCTTTGACATGGAAAAGACTGCCCACCTGGACAGCTGCCTGTCAGTCATCGCCCAGGCCTTCATGGACTCCTTCTCCTTAACAGAGCAGCAGCTGGGCAAGCATGCCCCAACAAACAAACTTCTGTATGCCAAAGACATCCCAAAGTACAAGGAGGAAGTGAAAGCGTACTACAAGCACATCGGAGAGCTGCCTGCCCATTCTGCCACAGAGTTTAGAGCCTTTCTTTTGGAAGAGTCAAAGaaacatgaaaatgaatttaaTGAATCAGCTGCACTTTGTGAAATCTACAAATATATCTTGAAATACTTTGATGAGATCCAGGTGAAACTGGATCAGATTGCAGATTTGGAGCAGAAGGCCGAATTGAAACAGAAGCTGAATCACGTCAAGGACTTATTTGATGAGCGGAAGAGGTGCAAGTGGGAGTGATGGCTCATCCTTGGcactcacacaaacaacacGGAAATATCTGTAGCTGGAGGGGACAGATTATCAATGCCACTGTTAACGTAATGTTCTGCACACCACAGCTATTCTGTAATACTAACCATGATAAAAACTTGTTATGTACTAACACTACCTTCATTTAGTTGGCTTTTACCACTGTTTCACGTACTCACAGACTTGTATTAAGCATTGTGTTCAGGTGTCCGGGTttcatggatttattttactttattcatattttggagACACGTTTTTCCACTCAAAACAGCAGAATAAGCCTAACATTGATTGTGAGCAAAGAAACTGCACAGATAtaatatgtacattatatttgtgtCACTAGTGAAATGAAACTACGGCCTTGAATGACTCAAGACAAAGACCTCATTGTATTATCTGAAGACACtttctaatatttataaataaacacatgataGGGTGCAAGTCAGTCGTTTTCATGgttaggtcaaagttttgttcTGGTCTAGGTCTGCGAGTCTTTTTCTTCAATATTAagttttgtatacattttttaattgtctgtttcagcctgctgttgtctgtttttattctaagtatgaaattaacttttaaagACCAGTACTCCACCCTGTTTTTAAGACAGCATAAAAGCCAGATATCTACAAACTTCTGATGCTTGAATTGTTAAAAGAAGCTGAACCTCACTTGAGCCTCCTGCTTTGGCATGCTGGTCAAAAAAACTGTGCTGTCAAGTGGCAGTTTCTGAATGTATAACGTGTGTAAAACAGGTGGTCTCAGAATTGTACCATGTGTTCTTCCACAAAGGGATACTACACAGGCACCAGTAGACTTGCTAAGGTGAAACCCTCACATCAGTTTCCAAAAGAATTTTACTGCCAAGGCACTACCAGCAGGGGAGGACAATCCAATCGTCTCACAGCATGCCTGACATGGCCGCCGGAGTGTGAATGAATGTGGCAGACACTCACTCCTGGAGGACAGCAATCCATTCTGCTTAGCAAGGACTGGGAGGACATGGCACGTGTTTGCACGGCTGTTGACCAGTGCACTGAGTTCAGGACAACGGGAAAGCATCAGTGCCAGAGCCCTGCGCAAGGAGCTCTGTAATCTGGAGTTTTTGCTGTCCTGCCCCTTATCTACTTACCCTTGACAAATACAGAGGGACTCTCACATTAATCCTCTCTGGGTCGCTGTTCATCTCATTGGCAGCGGATTAATGTGGTTGGGAATGCTCAGCTGGGGCGCGGGGGCAGGATGTGCTTTGTGGTGAAGCGCTTCACACCATTAACCCTGGAGGAAGGTGTTGTGATGTATGAGAGTGAGGGTTATGGTAGTTTATAGAATCTAGAAGAGGGAAAATACTCTCTTCATCCTTTTTGCTTGAAGCAGAGACGGCTGATCTCTGACATCAGGGTGCACTATGCCAATAATCGCTTGGCACACTGAAATGTAGCTTATTGGAGATTAATAACTAATAAGAAAATGTGTCAAGCCTTCCTGAAAATGTACACCAgaatatttattgattgtaCCTCCACAGCAGGTAGTTGCTTGAAGGCTATGATCTTGGCGTGCAACTGTTTTCTCATCGAGTGACAGGAGCTGTTGGGGATGTGTTTCAAGATCTAGCAGACAGACATTCAATTTAGAGAAGAAGGAGGGGAACTTCAGACAAACCACTATTACAGCAGACTGCCTTAAGCAGTAATACAGGACGTTGGTGTAGCTGGAgcttctgctgtttttttattttttattattacattatgtaCTTCCTGTTTGAAT

Function

GO: NA

KEGG:

id description
K06572 PLXNC, CD232; plexin C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012944 True 4329 mRNA 0.46 23 14675085 14702602

Neighbor

gene id symbol gene type direction distance location
AMCG00012937 NA coding downstream 200504 14452415 ~ 14474581 (-)
AMCG00012938 metap2 coding downstream 241929 14424811 ~ 14433156 (-)
AMCG00012932 NA coding downstream 343283 14326065 ~ 14331802 (-)
AMCG00012933 NA coding downstream 394364 14262518 ~ 14280721 (-)
AMCG00012927 phyh,LOC103369277,LOC102790656,LOC103375892 coding downstream 484998 14186362 ~ 14190087 (-)
AMCG00012943 socs2,LOC107590271,LOC107732999 coding upstream 55199 14757801 ~ 14772607 (-)
AMCG00012948 NA coding upstream 92440 14795042 ~ 14796838 (-)
AMCG00012955 tspan12,LOC102782178,LOC108228819 coding upstream 349361 15051963 ~ 15065613 (-)
AMCG00012956 NA coding upstream 375496 15078098 ~ 15079375 (-)
AMCG00012959 NA coding upstream 463348 15165950 ~ 15174248 (-)
G41047 NA non-coding downstream 86959 14587845 ~ 14588126 (-)
G41020 LOC107748465 non-coding downstream 145312 14528154 ~ 14529773 (-)
G41030 NA non-coding downstream 164400 14508557 ~ 14510685 (-)
G40967 NA non-coding downstream 335275 14339348 ~ 14339810 (-)
G40966 NA non-coding downstream 335857 14338914 ~ 14339228 (-)
G41088 NA non-coding upstream 14632 14717234 ~ 14717564 (-)
G41102 NA non-coding upstream 31133 14733735 ~ 14736629 (-)
G41138 NA non-coding upstream 139641 14842243 ~ 14922316 (-)
G41191 NA non-coding upstream 372832 15075434 ~ 15077820 (-)
G41224 NA non-coding upstream 533018 15235620 ~ 15235862 (-)
AMCG00012931 snrpf other downstream 330613 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 1559598 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 1768752 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 2403296 12240396 ~ 12271789 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 3812763 10857881 ~ 10862322 (-)
AMCG00012985 NA other upstream 1016911 15719513 ~ 15722457 (-)
AMCG00013018 NA other upstream 1927629 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 3177623 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 3227296 17929898 ~ 18046714 (-)
G41807 NA other upstream 3473459 18176061 ~ 18191522 (-)

Expression


Co-expression Network