Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00012953 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030125.1 |
| NCBI id | CM030125.1 |
| chromosome length | 49972098 |
| location | 15145480 ~ 15151823 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0060070 | canonical Wnt signaling pathway | biological_process |
| GO:0007219 | Notch signaling pathway | biological_process |
| GO:0030182 | neuron differentiation | biological_process |
| GO:0045165 | cell fate commitment | biological_process |
| GO:0060218 | hematopoietic stem cell differentiation | biological_process |
| GO:0005615 | extracellular space | cellular_component |
| GO:0005109 | frizzled binding | molecular_function |
| id | description |
|---|---|
| K01558 | WNT16; wingless-type MMTV integration site family, member 16 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00012953 | True | 942 | mRNA | 0.65 | 3 | 15145480 | 15151823 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00012950 | ing3,LOC106576172,LOC106609303 | coding | upstream | 68602 | 15067090 ~ 15076878 (+) |
| AMCG00012951 | NA | coding | upstream | 96635 | 15043019 ~ 15048845 (+) |
| AMCG00012952 | kcnd2,LOC108412901,LOC107658801,LOC107744998 | coding | upstream | 169658 | 14974710 ~ 14975822 (+) |
| AMCG00012949 | LOC108428177 | coding | upstream | 222518 | 14878762 ~ 14922962 (+) |
| AMCG00012945 | NA | coding | upstream | 294404 | 14834490 ~ 14851076 (+) |
| AMCG00012957 | NA | coding | downstream | 61165 | 15212988 ~ 15224513 (+) |
| AMCG00012962 | NA | coding | downstream | 108425 | 15260248 ~ 15260925 (+) |
| AMCG00012960 | NA | coding | downstream | 123129 | 15274952 ~ 15279247 (+) |
| AMCG00012963 | cog5,LOC106609192 | coding | downstream | 269020 | 15420843 ~ 15475870 (+) |
| AMCG00012972 | NA | coding | downstream | 374211 | 15526034 ~ 15531609 (+) |
| G41158 | NA | non-coding | upstream | 190441 | 14926325 ~ 14955039 (+) |
| G41096 | NA | non-coding | upstream | 408819 | 14735821 ~ 14736661 (+) |
| G41092 | NA | non-coding | upstream | 417031 | 14728182 ~ 14728449 (+) |
| G41084 | NA | non-coding | upstream | 440295 | 14704960 ~ 14705185 (+) |
| G41082 | NA | non-coding | upstream | 454806 | 14690110 ~ 14690674 (+) |
| G41184 | NA | non-coding | downstream | 8613 | 15160436 ~ 15166469 (+) |
| G41225 | NA | non-coding | downstream | 85464 | 15237287 ~ 15285288 (+) |
| G41226 | NA | non-coding | downstream | 96555 | 15248378 ~ 15264573 (+) |
| G41230 | NA | non-coding | downstream | 133518 | 15285341 ~ 15287816 (+) |
| G41265 | NA | non-coding | downstream | 328868 | 15480691 ~ 15483321 (+) |
| AMCG00012954 | NA | other | upstream | 8751 | 15081419 ~ 15136729 (+) |
| G41059 | NA | other | upstream | 512067 | 14632357 ~ 14633413 (+) |
| AMCG00012940 | LOC107748465 | other | upstream | 615674 | 14516783 ~ 14529806 (+) |
| G40999 | metap2,LOC108428789,LOC100194705 | other | upstream | 712279 | 14428313 ~ 14433201 (+) |
| G40629 | NA | other | upstream | 2609551 | 12488575 ~ 12535929 (+) |
| AMCG00012961 | NA | other | downstream | 146139 | 15297962 ~ 15317344 (+) |
| G41264 | hbp1,LOC108230206,LOC107701066 | other | downstream | 325356 | 15477179 ~ 15818342 (+) |
| AMCG00012973 | NA | other | downstream | 414670 | 15566493 ~ 15569943 (+) |
| AMCG00012978 | NA | other | downstream | 419083 | 15570906 ~ 15573468 (+) |
| AMCG00012982 | ssbp1,LOC106576077,LOC106609216 | other | downstream | 468912 | 15620735 ~ 15631003 (+) |
