AMCG00012957


Basic Information

Item Value
gene id AMCG00012957
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15212988 ~ 15224513 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012957
ATGGATCAGAATGACAATGACTTGCAAGGCACAGATGGATCTGGCAGTCTGGGGGGTCCTGATGTGCGGCGACGGATTCCCATAAAGCTGATCTCCAAACCAGCCATCAGGAACAAGCCAGTGGTCCGGCCGCAGAGAATAATGAACAGGATACCCTCCAAACCGCAGGCCGGGGATGAAGACAGTTTTGGCTACGGTGAAGAAGAGAGGTATGAATGCAAAGCTGCAGAAATATTTGGAAGTCAGCGTAGATTTCCGCAGCAGATGTTTTGGGATTTTAAGGTTAATTTGATTGGTGAGAAGGATGACACGCCCATTCATTTTTGTGATAAGTGTGGCCTCCCTATCAAGATATATGGACGGATGaTTCCTTGCAAGCATGTGTTCTGCTATGAGTGTGCTGTTATACATGAGAAGAAGTGTGACAAGATGTGTCCAGGCTGCAACGACCCCGTCCAGCGCATCGAGCAGTGCCTGCGGGGCTCCCTCTTCATGTGCAGCATCGTGCAGGGCTGCAAGCGGACCTACCTATCTCAGAGGGACCTGCAGGCCCACATCAACCACCGCCACATGAGGGCCGGCAAGCCAGCGGTGCCCCGTGCCCAGGGCGATGGTCTGCTCCTGCCCCCCATGGCTGGACCCACTGCCTCGGAGCTGCCCGAGCGCTTCCTGCTGCCGCCGGACAAGCACCACCTCCCTCACCTGCCCAAGCCTCACGTCCTGATCGCGCCGCCGCCCCTGCAGCACGTGAGTCACGAGCACTACAGCCAGCCTCACGAGGACCTGCGTGCGGCCCAGGCCCCGCCCTCCTCCTCCGACCTGGCCGCGCTGGGCCCGCCGCGCTCCGTGGCGCAGGAGACCTTCCGCATCTCTACCGTCACAACCCGCAAGCACAGTAACCTCATCACCCAGTTTTCTGAAGACCAAGGGACACTTAGTCCTCCTTTCACCCAGCCGGGAGGACTGAGTCCAGGGATATGGCCGGCACCAAGGGGCCCCCCTCCACCAAGGATGCAGGGGCCCCCACCTCAGGGCCAAATCCCAGGACCCCACCACCCTGACCAGTCACGCTATCGCCCCTACTACCAACATGTCAAGGAACGAAACTGCTGCGAAGTCGAGGATGATGCTGTGTATGTCAATCCTGGGGACTGTGATGTTGCCGGGGAGATCAGTGTTCCAGTTGATCTGAACAGGCAGGCCGGCAAAGTCTGTGGGCTGGTCCAGATCTTCCATGTTGCTTTCGTCTTCAGACTCTTCAATGGGAGCTGA

Function

GO: NA

KEGG:

id description
K15685 CBLL1; E3 ubiquitin-protein ligase Hakai

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012957 True 1272 mRNA 0.58 8 15212988 15224513

Neighbor

gene id symbol gene type direction distance location
AMCG00012953 NA coding upstream 61165 15145480 ~ 15151823 (+)
AMCG00012950 ing3,LOC106576172,LOC106609303 coding upstream 136110 15067090 ~ 15076878 (+)
AMCG00012951 NA coding upstream 164143 15043019 ~ 15048845 (+)
AMCG00012952 kcnd2,LOC108412901,LOC107658801,LOC107744998 coding upstream 237166 14974710 ~ 14975822 (+)
AMCG00012949 LOC108428177 coding upstream 290026 14878762 ~ 14922962 (+)
AMCG00012962 NA coding downstream 35735 15260248 ~ 15260925 (+)
AMCG00012960 NA coding downstream 50439 15274952 ~ 15279247 (+)
AMCG00012963 cog5,LOC106609192 coding downstream 196330 15420843 ~ 15475870 (+)
AMCG00012972 NA coding downstream 301521 15526034 ~ 15531609 (+)
AMCG00012974 NA coding downstream 321122 15545635 ~ 15554052 (+)
G41184 NA non-coding upstream 46519 15160436 ~ 15166469 (+)
G41158 NA non-coding upstream 257949 14926325 ~ 14955039 (+)
G41096 NA non-coding upstream 476327 14735821 ~ 14736661 (+)
G41092 NA non-coding upstream 484539 14728182 ~ 14728449 (+)
G41084 NA non-coding upstream 507803 14704960 ~ 14705185 (+)
G41225 NA non-coding downstream 12774 15237287 ~ 15285288 (+)
G41226 NA non-coding downstream 23865 15248378 ~ 15264573 (+)
G41230 NA non-coding downstream 60828 15285341 ~ 15287816 (+)
G41265 NA non-coding downstream 256178 15480691 ~ 15483321 (+)
G41282 si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652 non-coding downstream 331633 15556146 ~ 15559305 (+)
AMCG00012954 NA other upstream 76259 15081419 ~ 15136729 (+)
G41059 NA other upstream 579575 14632357 ~ 14633413 (+)
AMCG00012940 LOC107748465 other upstream 683182 14516783 ~ 14529806 (+)
G40999 metap2,LOC108428789,LOC100194705 other upstream 779787 14428313 ~ 14433201 (+)
G40629 NA other upstream 2677059 12488575 ~ 12535929 (+)
AMCG00012961 NA other downstream 73449 15297962 ~ 15317344 (+)
G41264 hbp1,LOC108230206,LOC107701066 other downstream 252666 15477179 ~ 15818342 (+)
AMCG00012973 NA other downstream 341980 15566493 ~ 15569943 (+)
AMCG00012978 NA other downstream 346393 15570906 ~ 15573468 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other downstream 396222 15620735 ~ 15631003 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location