AMCG00012960


Basic Information

Item Value
gene id AMCG00012960
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15274952 ~ 15279247 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012960
CTGCACGTCCCTGGCTCTGTGGTTCGCTCAGGTGCCCTTCTGGGCTACCTTTTTTACCATATGAAGGTTCATATGAATTGAAATTGTATCAGTATTCAGCATGATCAAAACTTATATCAATCTCAATATCTAATGCCGAAAAAGAAAGTTAAAGTTCTGCTTAGGTTAGGATGTCTTTGGCAACAATAATTGGTTGCTAACACTTTAAATTACGCAAAGCAATCTATTAACTAATTTTAAAGTGAGATTCAAGATAGATAACAGCCGAagaatttatatctttaagtgcattaattaaaaatacaatgaacattaaaaattaacagTAATGAatcaaacattaaatacatgagGATATCTAAACAGATAATATCACTCATGAACTTGTGTGTACTTAGTGTTTTTGCTTATTTCTccagttaataaataataacaaaacggTTATCCTGGGGTTATCACCTAGACTGGCAGACAGGCAGGCTCAATTCAggggacaaacacagagaccGAGAGATGAATTGGATTCAAATCCATCTCAGAGTTTCATGACACTACCAACAGGAtgctacatttgtttatttgtttgataaTTTGATGAAGAACAGACCTCCAGGATGTGATTAATCATACAAACGGTACATAATCTTAACACTCGGAAGGcaattgtttgcttttgctagtaatatatatatatattttaagaaatacaattcaGTTGATCTAACAAGCCTATAGAAGCAGGCTTTTATAAGATCACAATATCTGTTCATATCTCATGTTTCTTCTCCCTAACAGGTCATTAAAGAGTTCATGAGAATAAGTGTGAATGTCTACATCGCTGGATATGATGATGAAATTGCCCAGAAACTGGAACTCTGTGACTTTTTTGACGACATGGTGAAGAGGGACATTCTGTTCCTGACTGTGCACGACGCCGTCCTCTTCATTAAGCTGCAGATCATCAACGGCACCATTCAGGATCCCATATATGACatgATTGAATTGATGCAGACATCCAGAGATCCCATACTCTTAACTGACGATGAAGAAGTTGAGACTTATGACAATCAACACAGGGCTATCCATGGACTGTCTCACTGAGCGTGGACATCAGGATGGGTGGCAGGATGCCATCTTTTCTTACAATCTttgatttaaagtaaaataaatattcaaaatgaagGGTTTCTATATAGTTTTCATGCTTGCTCCTCCAGTTAGGTAGAAGTTCCGGAACTGCAGGGTGACTGAACTGCCATTGTGATTAGATGGCATGAGGTTTGTTTTACACAGTCTCGGGGGGGGGGCGATTTAACACTGGCTTTCCTTGCTTTGGTGTTTAAGCAAAGTCTATCAATTATCTATTGAATCTCTGTCCTTTTCCATGGAGAATTCAAAAGTTTGGCAACACTTTACCTTAAATGGGCAACGATTCTTCATgatgagttctgatgttgaacACATGTATCATCCCTGATCCCAAACCTAgtctgggattaaatcaaaactttgacccatccgctCATAGTAAACTACAGAACtctactcagttgcagcttcatttttagttagatgacACTATCTTCtgatcagaaatgtaaccgctatgatgtacaggtttttagtttgctattagcaggtgggtcaaagttttgatttaatccggcccctagtctaaccctgaccctaaccttgttatacTTGTTATACCCATCATTTGAATGGGATTCTACCTCATGCTGAAAGGTGCTGATGTAGatgtgtgtacagtgtggactgacaacattttttgttctgtctATGTGGCCtgtttgcatatattttattttcagttgtagACGCCTGTTCATTGGTGCAACTACAGGGCCAGTCTGGGGGATAAACAATGTGTTTCCTTTCCCATCATGCCTTCCTGTTATGGAGGCATCCAACTCATCCTGACCTCACAGGAAGACCACTGTGGTCCTCAGGTGGCATCATGATATATGTGACACAGGAAGACTCCAGGGGATGGGAAGCCAAGTGTTTACGCTCATTCTTACACTATTGTGGCAGCGATAAATGGGCCTTATGCAAAGAatcttcttaaaataaacagaataacaaataaaacaaactctgTATTTACGTATTTGATATTACCATGAATCTGTCCTGTCACTTATTCATTATGGGTAAAGAATTTGAACTGGTATTGTactgtcattttttaaactgcactgACTAGTGACAGACAGAGGTGCAGAGAGATATGTTATTAATCAGTGATCAGGAATTCTCCAAAGAAGCTTCTCCATACTGTATACACAGCTTGTACGTAAGTAATAGGCTACATGTATTGCTTTCTAAAGTTAAGATCTTAAaagtattgtttaataaatgacCAAATCCAAACTcaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012960 True 2400 mRNA 0.38 4 15274952 15279247

Neighbor

gene id symbol gene type direction distance location
AMCG00012962 NA coding upstream 14027 15260248 ~ 15260925 (+)
AMCG00012957 NA coding upstream 50439 15212988 ~ 15224513 (+)
AMCG00012953 NA coding upstream 123129 15145480 ~ 15151823 (+)
AMCG00012950 ing3,LOC106576172,LOC106609303 coding upstream 198074 15067090 ~ 15076878 (+)
AMCG00012951 NA coding upstream 226107 15043019 ~ 15048845 (+)
AMCG00012963 cog5,LOC106609192 coding downstream 141596 15420843 ~ 15475870 (+)
AMCG00012972 NA coding downstream 246787 15526034 ~ 15531609 (+)
AMCG00012974 NA coding downstream 266388 15545635 ~ 15554052 (+)
AMCG00012980 NA coding downstream 337010 15616257 ~ 15618444 (+)
AMCG00012983 NA coding downstream 352179 15631426 ~ 15639738 (+)
G41226 NA non-coding upstream 10379 15248378 ~ 15264573 (+)
G41184 NA non-coding upstream 108483 15160436 ~ 15166469 (+)
G41158 NA non-coding upstream 319913 14926325 ~ 14955039 (+)
G41096 NA non-coding upstream 538291 14735821 ~ 14736661 (+)
G41092 NA non-coding upstream 546503 14728182 ~ 14728449 (+)
G41230 NA non-coding downstream 6094 15285341 ~ 15287816 (+)
G41265 NA non-coding downstream 201444 15480691 ~ 15483321 (+)
G41282 si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652 non-coding downstream 276899 15556146 ~ 15559305 (+)
G41303 NA non-coding downstream 440260 15719507 ~ 15722866 (+)
G41325 NA non-coding downstream 579817 15859064 ~ 15859370 (+)
AMCG00012954 NA other upstream 138223 15081419 ~ 15136729 (+)
G41059 NA other upstream 641539 14632357 ~ 14633413 (+)
AMCG00012940 LOC107748465 other upstream 745146 14516783 ~ 14529806 (+)
G40999 metap2,LOC108428789,LOC100194705 other upstream 841751 14428313 ~ 14433201 (+)
G40629 NA other upstream 2739023 12488575 ~ 12535929 (+)
AMCG00012961 NA other downstream 18715 15297962 ~ 15317344 (+)
G41264 hbp1,LOC108230206,LOC107701066 other downstream 197932 15477179 ~ 15818342 (+)
AMCG00012973 NA other downstream 287246 15566493 ~ 15569943 (+)
AMCG00012978 NA other downstream 291659 15570906 ~ 15573468 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other downstream 341488 15620735 ~ 15631003 (+)

Expression


Co-expression Network