AMCG00012963 (cog5,LOC106609192)


Basic Information

Item Value
gene id AMCG00012963
gene name cog5,LOC106609192
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15420843 ~ 15475870 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012963
ATGATGTACTGTGTCATTTTTGATTACCTGTCACAAGGAGTCGATCTGTCGGGGATAGATGTGATCGAGACGGACCTGCTTTTCATTGCCCGCTCTCGACTGGAGGTAGAGAACCAGGCCAAGCGCCTCCTGGAGCAGGGAATGGAGATTCAGaaccCTACTCAGGTGGGGACAGCGCTGCAGGTCTTCTACAACCTTGGgagtttaaaacaaaccataaacaatGTGGTTGATGGTTACCGAGTGTCACTGGAAGAGAACGTGTCCAACGCACTGGACATCAGAGTCTTGACTCAAGCAAATCAGGGAATCGCAAGAGGGGGTCCTGGGAGAGCTGTGATGCCAACACCAGGGAACACAGCCGCTTTCAGAGCAGCTCTGTGGACCAACCTGGAGAAGCTGATGGACCACATCTGTGCATCCTGTGGACAAGTGCAGCATCTGCAGAAGGTACTTATTAAGAAAAGAGACCCAGTGACCCACGTGTGCTTCATTGATGAGATTGTTAAGGATGGCCATGCAGACATCTTGTTTACATTCTGGAATTCTGTCACACAGATTCTCGCCATCGAATTCCAAAAGGCAACAAACTCTTCCTCATTCCTGAAGCAAGCTCTGGAGGGAGAATACCCCAAACTGCTGAGACTCTACAATGAGCTGTGGAGGCGACTGCAGCAGTACAGCCAGAGCATTCAGGGCAGTCTGGCTGGCAGCACGGGCTTGGAGCTTGTGGCCGAACTTCCCCCTGGAGAGCTGGACACACAGGACCTCTTCATGCACAAGAAACAGGATTATGAtCCAGAGAAGGCGTTGAAGGACTCCCTGCAGCCCTATGAAGCGGCCTATCTGTCCAAGTCTCTGTCCCGCCTCTTTGATCCCATCAATCTGGTCTTCCCCATGGGGGGGCGCAACCCTCCCTCTAGCGATGAACTGGAGAGCATCATTAAAACCATCGCAAGTGAGCTGAATGTGGCTGCGGTCGACTCAAACCTGACTTTGGCCGTGGCGAAAAATGCGGCGAAGACCCTCCAGTTGTTTTGTGTCAAATCGGAGCAACTTCTGTCCACACAGGGGGATGCCAGTCAGGTTATCGGGCCTCTTACCGACGGGCAGAGAAGAAACGTGGCCGTCGTCAACTCCTTGCATAAGCTGCACCAGTCAGTGGGGAAGgtgATCTCTGGTCTGAGCTTCTGTCCGGTGGTTGCTGAACAGGCCCTGATTGCTGCCTTAGAGGAGGTGCAGTCTCTCATGGGCAGTGCTGTGCAGCCACTGCTCCACTCCGTCAGCGACTCAGTGGAGGCCATTATCATCACCATGCACCAGGAGGACTTTTCTGGGCCTCTGTCCAATACAGGGAAGCCGGATGTGCCGTGTTCCCTGTACATGAAGGAGCTACAGGGCTTCATATCACGAGTCATGAGCGACTACTTCCGACACTTTGAGTGTATCGACTTCATCTACGACAATACTGAGGCCATAGCACAGCGAGCCATCGAGATTCTCATTCGCAACGCTGGGCTGCTGCGGCCGCTGGGAGAAGGGGGGAAGATGAGGCTGGCGGCTGATTTCGCTCAGATGGAGCTCGCCGTCGCCCCCTTGTGCAGAAGAGTGTCAGACCTGGGCAAGCCATACCGCCTGCTGCGCTCCTTCCGGCCTTTGCTTTTCCAGACCAGTGAGCATATTGCCAACAGCCAGGCGGTGGGGGATGTCATTCCGTACAGCACCATCCTGCACTTCCTGTTCACGCGAGCGCCGCCTGAGATGAGGTCCCCACACCAGaGAGCAGAATGGTCCATTGCACGATATTCCCAGTGGCTCGATGACCATCCATCAGAAAAGGACCGCTTGACTCTCATAAGAGGTGCACTGGAGGCCTATGTGCAGTCTGTCCGTGCCAGAGAGGGGAAGGAGTTTGCACCCATATATCCAATAATGTTACAGCTGCTCCAGAAAGCCACGACGGTGCAACAGTGA

Function

symbol description
cog5 Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIi. Orthologous to human COG5 (component of oligomeric golgi complex 5).

NR:

description
PREDICTED: conserved oligomeric Golgi complex subunit 5-like

GO:

id name namespace
GO:0006891 intra-Golgi vesicle-mediated transport biological_process
GO:0017119 Golgi transport complex cellular_component

KEGG:

id description
K20292 COG5; conserved oligomeric Golgi complex subunit 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012963 True 1974 mRNA 0.54 17 15420843 15475870

Neighbor

gene id symbol gene type direction distance location
AMCG00012960 NA coding upstream 141596 15274952 ~ 15279247 (+)
AMCG00012962 NA coding upstream 159918 15260248 ~ 15260925 (+)
AMCG00012957 NA coding upstream 196330 15212988 ~ 15224513 (+)
AMCG00012953 NA coding upstream 269020 15145480 ~ 15151823 (+)
AMCG00012950 ing3,LOC106576172,LOC106609303 coding upstream 343965 15067090 ~ 15076878 (+)
AMCG00012972 NA coding downstream 50164 15526034 ~ 15531609 (+)
AMCG00012974 NA coding downstream 69765 15545635 ~ 15554052 (+)
AMCG00012980 NA coding downstream 140387 15616257 ~ 15618444 (+)
AMCG00012983 NA coding downstream 155556 15631426 ~ 15639738 (+)
AMCG00012986 NA coding downstream 229728 15705598 ~ 15715080 (+)
G41230 NA non-coding upstream 133027 15285341 ~ 15287816 (+)
G41225 NA non-coding upstream 135555 15237287 ~ 15285288 (+)
G41226 NA non-coding upstream 156270 15248378 ~ 15264573 (+)
G41184 NA non-coding upstream 254374 15160436 ~ 15166469 (+)
G41158 NA non-coding upstream 465804 14926325 ~ 14955039 (+)
G41265 NA non-coding downstream 4821 15480691 ~ 15483321 (+)
G41282 si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652 non-coding downstream 80276 15556146 ~ 15559305 (+)
G41303 NA non-coding downstream 243637 15719507 ~ 15722866 (+)
G41325 NA non-coding downstream 383194 15859064 ~ 15859370 (+)
G41469 NA non-coding downstream 597644 16073514 ~ 16074099 (+)
AMCG00012961 NA other upstream 103499 15297962 ~ 15317344 (+)
AMCG00012954 NA other upstream 284114 15081419 ~ 15136729 (+)
G41059 NA other upstream 787430 14632357 ~ 14633413 (+)
AMCG00012940 LOC107748465 other upstream 891037 14516783 ~ 14529806 (+)
G40999 metap2,LOC108428789,LOC100194705 other upstream 987642 14428313 ~ 14433201 (+)
G41264 hbp1,LOC108230206,LOC107701066 other downstream 1309 15477179 ~ 15818342 (+)
AMCG00012973 NA other downstream 90623 15566493 ~ 15569943 (+)
AMCG00012978 NA other downstream 95036 15570906 ~ 15573468 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other downstream 144865 15620735 ~ 15631003 (+)
AMCG00012987 NA other downstream 306494 15782364 ~ 15791627 (+)

Expression


Co-expression Network