AMCG00012964


Basic Information

Item Value
gene id AMCG00012964
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15219333 ~ 15233107 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012964
ATGATGAGGAATCCCCCCAGCCAGTACATTGTGGCCCGGCCACTGTATTCAGAGGACTCCTTCAAGGAAGACAATGAGAGAGTGCAAAGACGACACAAATCCTTACTGAATCACGTGAAGGActgTTCTTCAAAAAGAGCAAAAAATGCAGGTTTGTCCCTGTTGCCTATCATTGGCTGGATCAGGATTTATCGCATCAAGGAGTGGCTTTTGAGTGACATAGTGTCCGGCCTGAGCACTGGACTTGTGGCTGTTCTGCAAGGTCTGGCTTTTGCGTTGCTGGCTTCTGTTCCTGCTGGTTATGGGCTGTATACAGCTTTCTTCCCAGTTTTGACTTACTTCTTCTTGGGCACTTCAAGGCATATATCAGTAGGCCCCTTCCCAGTGCTGAGTTTAATGGTGGGCTCAGTCGTCATGAGGATAGTGCCAGAAAATGGGACCCAAGCCAACATCACCGCCTTCGAGGGACTGTCTCTTCAAGATAAGCAAGTGATGGTGGCAGCCTCTGTGACTTTTCTAGTAGGAATCTTTCAGCTGGCACTGGGTCTGCTCCAGATTGGGTTTATTGTCATCTACATGTCTGACACCCTGGTGTCCGGATTCACCACGGCAGCCGCTGTTCACATTCTGGTTTCCCAGTTGAAATTCATATTAGGATTAACTGTTCGTGGGGAAAATGGAGCCTTTGCTATCATTAGAACCTTGGAGAGCATATTCTCTCAGATCACCAAGACAAACATCCCAGACCTGGTTACCTCCATAATCATCATGGTTGTTGTCTTCATTGTGAAGGAGCTTAATGACAGATTCAAAGCCAAGTTGCCAGTCCCCATCCCCATTGAAGTGATCATGactGTCATAGCTTGTGGGGTGTCCTACGCATTTGACTTCCAGACCCTATATGGGGTTAGTGTTGTTGGCAAGCTAAAAGAAGGGTATGAGTCCCCAATGGCCCCAAATTTAGAAATCTTACAGCTCAGTGTCATGGATGCCTTTTCCATGGCAATTGTGGCATTTGCAATTGCCTTTTCTGTTGCAAAAGTTTACTCTGTTAAACATGATTATCTTATCGATGGCAACCAGGAATTAATCGCTTTTGGTGTCAGTAATATATTCGGTGCAAGTTTCAGAAGTTTTGCAGCTTGTACATCTCTTTCAAGGAGTGCTGTGCAGGAAAGCACCGGCGGCAAAACTCAGattgCTGGTCTCCTCTCTGCTATGGTGGCAATGATTGTCACAGTGGGAATTGGCTTCCTTCTAGAGCCACTTCAGACGTCTGTGCTGGGAGCGTTGGTGGTTGTCAACTTGAAGGGGATGCTGATGCAAGTCAGAGAGATCCCTTATCTTTGGAAAAAGGACAAGCCTGACTGTATTGTCTGGGTGGTTACTTTTGTTGCTTCCATCTTCCTTGGGCTCGACCTTGGACTGGCTGTTGGGCTGGGAATTGAACTTCTTACTGTTGTCTTCAGGACACAGTTCCCACGCTGTTCCGTACTGGCCAACATCAAGGGAACAGATATCTACAGGGACAGGAAAGATTACCTGAGTATTTATGAACCAGACGGCGTGAAGATCTTCAGAATCCCTTCACCGATCTTCTTTGCCAACATCGAGTTCTTTAGGGACAAACTCAATGCTGCGGTGGGATTTAATCCACTCCGGATCTTGCGCAAGAGGAACAAGGCCctgaggaaaataaagaaacttttGAAGAATGGAGAGCTGCAGATAACACCAAAAGGTCTGCTATACACTGGATCAGCTCCCATTGAAGAGTCTGAAGACGAAAGCAACATGGAAGATCTGGACCAGCCCACAGACTTTGCCGGCCTGCCTGTTCAGATCAACTGGAACACTGATCTCCCCGGCAACATCACAGTCCCCAGGATTGACATACACAGCATCATCCTCGACTTCGCAGCAGTTTCGTTCCTTGACATGTCTGGAATTAATGGccttaaaatgACATTGAAGGAATTTACACGAGTTGAGGTGGATGTCTACATTGTAGCATGCGACTGTTATATTTTGGACAAACTACATGAATGTGGATTTTTTGACAATGAGATCAAGACCTCAATCTTCTTCTTGACCCTCCATGACGCCATGCTGTGCATCCTGGAGAAACATCCGGACCACACAGAGGATCTGAAGGCATCGAAGaataaTTATCACAGCTTCAAAGTCAGTCAGGGCAGTGGCAgcttgagaaagagagagagtgaaGTTCCAGACCCTGAGACGAAATTTTAAAATTCTGACAGAGATCCCAGCactagaaaataaacatttggacaATCCTTCCTGTTCTCCTATCAATGAAAAGGCAGTATGAGTTCTAGGGACACTACAGTTTGAACAGCTTATTGATGTGAGTGCTACTTCGCATTACTCAGTTTCACCTTTCTTCAAAAAAGGAGACCATTAGGGAAGCTGAGCTTGATTTTGAGTGCTGACTAATTATATTATTGAGACTTCATACCTTTACAAACaattggcaaaaacaaaaacttattACAACTTATTCTTGGCAAAAgttttacataatataaactGGAAATTGCAAGGTAGAGCAAACCTGATTTGAACTAGATAAACTAGGGTCAGAGAAAAAAAGCTTCAGGTCACACCTCAAATATTCTTCAACCAAGATGagatgtatttcattttcattgtcctattaaatagcattttgtctgaaaatgttttgtaaatagggaagatttattttaaatactcttttttttaaagtgcatgaTTCAATTTTATCTGTGTATcacaaggtttaaaaaaataataattgtacatttcaaattatagtGCTGAAGATTAATGTATAATGCTGTTATGGTAAAGATGATAAGAAGCCACATACAGCTGATATCCACTGTCACTGGCATGATCTTGCTGAGATCTTTCAAAGAGGACGGCCCCATTTgtcaattgtattttatgtgagCACCAGACTTCAGGGCAGGGAACAGAAGCAGGTATACCGCAATGCAGACTGGAACCTGGCAgcagtattgtgtttttaaatggcagGGGGTTGTACAGTGTTCTGGTGTGGTTTCTATCGGGTGCCAGACAGTCCACAGTGAAACACCCACTCAGATCAGCTCTCCAGAACCTCTCCAGGTCAGGGTTCAGCAAAATCTGAACGGATGTAGCTAAGTATAGTGTAatgattaatatgtattaagcATTAAATTAAGCATTACATTAAATGAGTCCCAGAATTACTGTTTCAAGtgaagggtttgaatacttccAGCTGCAGCAGGCTTTGTCATGATGGCATAGTCCAACAATAAACACAAGTACATGTgcagagaaatacaaaacaatctcacacacactgcatttcCATTCTGAGATTTCCTTacaacataacataacacaacCCGGTTAACATCATATATTGGTACTTTGCTATTGCAAGTAATTCTGTCGTTTGATTTTACAGTTAGAATTTTGTATAGCATATTCCAATGTATATACTGTTCTGAGTAGAAGTACTTAGTCGTACAATAAAGCAATAGCAATTCAAACTAAAGGTCTATTTTGATTATTTGGGAGGAAGATCAGACTATAATCAGTGAGAATGATGTGGTGTGACCCAAGACTTTGCAAAGCAATGTCAC

Function

GO: NA

KEGG:

id description
K14078 SLC26A3, DRA; solute carrier family 26 (chloride anion exchanger), member 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012964 True 3644 mRNA 0.42 20 15219333 15233107

Neighbor

gene id symbol gene type direction distance location
AMCG00012958 NA coding downstream 7001 15176288 ~ 15212332 (-)
AMCG00012959 NA coding downstream 45085 15165950 ~ 15174248 (-)
AMCG00012956 NA coding downstream 139958 15078098 ~ 15079375 (-)
AMCG00012955 tspan12,LOC102782178,LOC108228819 coding downstream 153720 15051963 ~ 15065613 (-)
AMCG00012948 NA coding downstream 422495 14795042 ~ 14796838 (-)
AMCG00012971 NA coding upstream 34107 15267214 ~ 15304371 (-)
AMCG00012970 NA coding upstream 83986 15317093 ~ 15324723 (-)
AMCG00012965 NA coding upstream 108050 15341157 ~ 15354156 (-)
AMCG00012968 NA coding upstream 121984 15355091 ~ 15373666 (-)
AMCG00012966 LOC107734741 coding upstream 143369 15376476 ~ 15378948 (-)
G41191 NA non-coding downstream 141513 15075434 ~ 15077820 (-)
G41138 NA non-coding downstream 297017 14842243 ~ 14922316 (-)
G41102 NA non-coding downstream 482704 14733735 ~ 14736629 (-)
G41088 NA non-coding downstream 501769 14717234 ~ 14717564 (-)
G41047 NA non-coding downstream 631207 14587845 ~ 14588126 (-)
G41224 NA non-coding upstream 2513 15235620 ~ 15235862 (-)
G41243 NA non-coding upstream 4183 15237290 ~ 15278312 (-)
G41369 NA non-coding upstream 333402 15566509 ~ 15569851 (-)
G41386 NA non-coding upstream 405772 15638879 ~ 15639990 (-)
G41402 NA non-coding upstream 557185 15790292 ~ 15822009 (-)
AMCG00012931 snrpf other downstream 874861 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 2103846 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 2313000 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 2947544 12240396 ~ 12271789 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 4357011 10857881 ~ 10862322 (-)
AMCG00012985 NA other upstream 486406 15719513 ~ 15722457 (-)
AMCG00013018 NA other upstream 1397124 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 2647118 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 2696791 17929898 ~ 18046714 (-)
G41807 NA other upstream 2942954 18176061 ~ 18191522 (-)

Expression


Co-expression Network