AMCG00012965


Basic Information

Item Value
gene id AMCG00012965
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15341157 ~ 15354156 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012965
GAAATAACGTGTACAGGGGGAGGGATGACATTTGAAACACTTGAATCTCGTGCCAGTAGGTTCTTTTTTACTTGTATAACAACATCAATGTCTTTTCAGAAACACATATAAATACCAAACAGGAAGTAACTGTACCACAGTCTGAATTACTCCCTGCAGGAAGGATAGCATCAGTACAAGtgatgGATCTTCCCCATCCTGAGTACAATTACTTTGTTGCTCGACAAATTTACAACAAACCTGCTTTCGATGATGAACACGAAAGAAAAGCACGAGTTCCAAAGACGTTGCGGGAGAAATTAGTCCCAAAATGCGAttTTTCCAAGAAAAGGGCCTTTCAGATCACAAAGGGTTTCCTTCCCATTTTGGACTGGCTGCCTCAGTACAGAATAAAGGAATGGCTGCTCAGTGACATCATCTCTGGAGTCAGCACTGGACTGGTGTGTACTTTGCAGGGATTGGCCTTTGCTTTGCTGGTCGCTGTCCCACCCAAATATGGTCTTTACGCTGcatttttccccattttgtCCTATTTTATTATGGGAAcctcaaaacatatttctgtaGGCCCCTTTCCAGTGACCTCTTTGATGGTGGGGTCAGTGGTCTTGACAATGGCTCCAGATCAGAACTTTATGATAGCTTCTAATGGCACAAGTATCAATGGAACCGTTATTGACACAGCTGCCAGAGATGCATACCGGGTTATGGTGGCTGGCACTATGACCTTCCTGATTGGATTCTTtcagctGGGCATGGGAGTACTCCAGATTGGGTTTCTGGTACGATACCTCTCTGACCCCTTGGTGGGGGGCTTCACCACCGCAGCTGCGTTCCAAGTCTTTGTCTCTCAAGTAAAACTAATTCTTGCAGTGCCAACACTTAACTACAATGGAGTTCTTTCAATCATATATACAATcattgacattttcaaaaatattcatCTCACGAATTTTGCGGATCTGGTTGCGGGTTTACTGACCATTTTAGTTATAATGACAGTAAAAGAACTCAACACTAAATACCAGCATAAAATTCCAGCTATAATTGCAACAGCCATCTCTTATGGTGTTAACTTGCAGGCAAAgtacaatgcacacattgtcAAGAGCATCCCAAGGGGATTTCTTCCCCCTCAGCCTCCTGATGTCAAGATATTTTCAGAGATTGCGGCCTCCAGTTTCTCCTCTGCCATCGTGGGGTACGCAGTGGCTGTCTCTGTGGGGAAAGTGTACGCTAATAAATTTGACTACACAGTAGACGGAAATCAGATTGCTGGTATTCTTTCAGCCTTAATAGTTTTGATCGTCATAGTTGCCCTGGGACCCTTACTGCAACCTCTACAAACGTCGGTTCTGGCAGGCATCGTCGTCGCCAACCTCAAAGGAATGTTCATGCAGGTTCTGGATGTTCCTCTCCTCTGGAAGCAGAACAAAACCGACTCTATAATTTGGGTCTTTACCTGCATTGGATCCATAATCCTGGGACTTGACGTTGGGCTACTGGCAGGTGTGGTGTTTGAAATGGCCACAGTGGTGGTTAGAACCCAGTTCCCCTCCTGCTCCGCCCTTGCCAACGTCCCAGGCACAGACCTCTATAAGAACATTAAGGACTACAAGAATATTTCAGAAGAACCGGGAATAAAAATCTTCAAATGCAATTCTCCCATCTACTTCGCCAATATCGATTTCTTTAGAGACCGCTTGAAGGCAATCGTTGGGGTGGATGCAGTGAGAGTTAATAAGAAGAGGACCAAGGCCCTGAAGCAGATACAGAGACTCATTAAGAAGGGAAGGTTAAGAGCGACTAAGAATGGCGTGGTGTCAACTACGGGCATTGACAACGAGGCCTTTGAGAAGGACCCAGAAGAAGTGGAGGACAATGAAATCCCCAGCACACAGGTGGACATACAGGTGGACTGGAATGCCGATCTGCCGGTGAAAGTGGCTGTGCCAAAAGTCCATATCCACAGCCTCATCTTGGATTTTTCAGCTGCGTCCTTTCTTGATGTCATGTCTGTAATTAAAGAGTTCATGAGAATAAGTGTGAACGTCTACATCGCTGGATATGATGATGAAATTTACCAGAAACTGGAATTGTGTGACTTTTTTGACGACATGGTGAAGAGGGACATTCTGTTCCTGACTGTGCACGATGCCGTCCTCTTCATTAAGCTGCAGAGCATCAACGGCACCATTCAGGATCCCATATATGACAAGATCGCATTGATGCAGAATTCCAAAGATCCCATACTCTtaactgatgatgatgatgaagaagtAGAGACCTATGACAATCAGCACAGGGTGATT

Function

GO:

id name namespace
GO:0009651 response to salt stress biological_process
GO:0055081 anion homeostasis biological_process
GO:0006821 chloride transport biological_process

KEGG:

id description
K14702 SLC26A4, PDS; solute carrier family 26 (sodium-independent chloride/iodide transporter), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012965 True 2312 mRNA 0.45 19 15341157 15354156

Neighbor

gene id symbol gene type direction distance location
AMCG00012970 NA coding downstream 16434 15317093 ~ 15324723 (-)
AMCG00012971 NA coding downstream 36786 15267214 ~ 15304371 (-)
AMCG00012964 NA coding downstream 108050 15219333 ~ 15233107 (-)
AMCG00012958 NA coding downstream 128825 15176288 ~ 15212332 (-)
AMCG00012959 NA coding downstream 166909 15165950 ~ 15174248 (-)
AMCG00012968 NA coding upstream 935 15355091 ~ 15373666 (-)
AMCG00012966 LOC107734741 coding upstream 22320 15376476 ~ 15378948 (-)
AMCG00012967 NA coding upstream 51609 15405765 ~ 15412645 (-)
AMCG00012969 NA coding upstream 123730 15477886 ~ 15485986 (-)
AMCG00012977 prkar2b,LOC101073002 coding upstream 138205 15492361 ~ 15509522 (-)
G41243 NA non-coding downstream 62845 15237290 ~ 15278312 (-)
G41224 NA non-coding downstream 105295 15235620 ~ 15235862 (-)
G41191 NA non-coding downstream 263337 15075434 ~ 15077820 (-)
G41138 NA non-coding downstream 418841 14842243 ~ 14922316 (-)
G41102 NA non-coding downstream 604528 14733735 ~ 14736629 (-)
G41369 NA non-coding upstream 212353 15566509 ~ 15569851 (-)
G41386 NA non-coding upstream 284723 15638879 ~ 15639990 (-)
G41402 NA non-coding upstream 436136 15790292 ~ 15822009 (-)
G41442 NA non-coding upstream 601279 15955435 ~ 15956038 (-)
G41443 NA non-coding upstream 601943 15956099 ~ 15959544 (-)
AMCG00012931 snrpf other downstream 996685 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 2225670 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 2434824 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 3069368 12240396 ~ 12271789 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 4478835 10857881 ~ 10862322 (-)
AMCG00012985 NA other upstream 365357 15719513 ~ 15722457 (-)
AMCG00013018 NA other upstream 1276075 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 2526069 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 2575742 17929898 ~ 18046714 (-)
G41807 NA other upstream 2821905 18176061 ~ 18191522 (-)

Expression


Co-expression Network