AMCG00012966 (LOC107734741)


Basic Information

Item Value
gene id AMCG00012966
gene name LOC107734741
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15376476 ~ 15378948 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012966
gttggCTTTTCGAACCCTTGTTCGGAAGTATGACTGCAATCTGTGCTTCACCCCAATGATAGTTGCTGCTGACTTCATAAGATCTGTCAAAGCTAGAGACAGTGAATTTACAACAGACCAAGAGGGATATGGTGCCTGTCTAATAAACAAGCCGGAGCTTGTCCGTGATATGGTGAGGCTGGTTAGTAACCAGGTGGACAATCCCAGTTTTTCTGTCTCCATCAAAGtaagAATACACCAGGATGTAAGGTCCACCGTTGACCTGTGTCAGAAGGCAGAGGCAGCAGGCGTGTCCTGGATCACGGTCCATGGGAGGACAGCAGAGGAGCGCCATCAGCCAGTGAACTATGATGCAATTAAGATAATCAAAGACAGTGTATCTATCCCTGTGGTGGCCAATGGTGATATTAAGAATATCAAAGATGTGGAGTTGATTCACCAGATGACAGAAGCTGATGGGGTCATGGCAGCAAGAGGTTTACTTGCCAATCCAGCGATGTTTGCTGGTTATGGTGATACCCCCCTGCAGTGCATCTGGGATTGGGTAGACATTGCTTTAGAGCACGGAACGCCATTTACCTGCTTTCATCACCATTTAATGTACATGATGGAAAGGATTACCTCGCCACAggaaaaaactgttttcaatGCCCTCACAAGCACCTCTGCTGTTGTAGATTACTTGAATGAGACTTATAGT

Function

NR:

description
PREDICTED: tRNA-dihydrouridine(20a/20b) synthase [NAD(P)+]-like, partial

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K05545 DUS4; tRNA-dihydrouridine synthase 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012966 True 700 mRNA 0.46 4 15376476 15378948

Neighbor

gene id symbol gene type direction distance location
AMCG00012968 NA coding downstream 2810 15355091 ~ 15373666 (-)
AMCG00012965 NA coding downstream 22320 15341157 ~ 15354156 (-)
AMCG00012970 NA coding downstream 51753 15317093 ~ 15324723 (-)
AMCG00012971 NA coding downstream 72105 15267214 ~ 15304371 (-)
AMCG00012964 NA coding downstream 143369 15219333 ~ 15233107 (-)
AMCG00012967 NA coding upstream 26817 15405765 ~ 15412645 (-)
AMCG00012969 NA coding upstream 98938 15477886 ~ 15485986 (-)
AMCG00012977 prkar2b,LOC101073002 coding upstream 113413 15492361 ~ 15509522 (-)
AMCG00012975 pik3cg,LOC106609208,LOC107656384,LOC107583938,LOC107590535 coding upstream 133524 15512472 ~ 15522929 (-)
AMCG00012979 ascl4 coding upstream 157721 15536669 ~ 15537223 (-)
G41243 NA non-coding downstream 98164 15237290 ~ 15278312 (-)
G41224 NA non-coding downstream 140614 15235620 ~ 15235862 (-)
G41191 NA non-coding downstream 298656 15075434 ~ 15077820 (-)
G41138 NA non-coding downstream 454160 14842243 ~ 14922316 (-)
G41102 NA non-coding downstream 639847 14733735 ~ 14736629 (-)
G41369 NA non-coding upstream 187561 15566509 ~ 15569851 (-)
G41386 NA non-coding upstream 259931 15638879 ~ 15639990 (-)
G41402 NA non-coding upstream 411344 15790292 ~ 15822009 (-)
G41442 NA non-coding upstream 576487 15955435 ~ 15956038 (-)
G41443 NA non-coding upstream 577151 15956099 ~ 15959544 (-)
AMCG00012931 snrpf other downstream 1032004 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 2260989 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 2470143 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 3104687 12240396 ~ 12271789 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 4514154 10857881 ~ 10862322 (-)
AMCG00012985 NA other upstream 340565 15719513 ~ 15722457 (-)
AMCG00013018 NA other upstream 1251283 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 2501277 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 2550950 17929898 ~ 18046714 (-)
G41807 NA other upstream 2797113 18176061 ~ 18191522 (-)

Expression


Co-expression Network