AMCG00012976 (si:dkey-180p18.9,LOC107725652)


Basic Information

Item Value
gene id AMCG00012976
gene name si:dkey-180p18.9,LOC107725652
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15554199 ~ 15565616 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012976
TACGGCAGCTGCCTTGTGGTCTGTAGTCacagtttaatttctttctttatttcattaccCTTATTCAACTTGAACAAGTCCTTATTTACGATGGCAACTGAAGTGGTGCTAAACACTGGCGCAAAAATGCCAATTCTGGGTCTCGGGACGTGGAAGTCTCCCCCAGGCAAAGTGACTGAAGCTGTGAAAGCCGCCATAGCTGCTGGTTATCGGCACATCGACTGTGCCTATGTCTATGAGAACGAGAATGAAGTGGGAGAAGGCATTCAGCACAAGATCAAGGATGGAACTGTGAAGAGAGAGGACCTTTTCATTGTCAGCAAGCTTTGGTGCACCTTCCATGACAAGACCATGATTAAAGATGCCTGTCAGAAGACTCTAACTGATCTTAAGCTGGACTACCTAGATCTCTACCTTGTGCACTGGCCCATGGGATTCAAGGCTGGCAGTGAAATGTTCCCACTGGATGACAACCAGTTAGTAATTGCGGATGACACCAGCTTTGTAGACGCCTGGGAGGGTATGGAGGAGTTGGTAGATGCGGGAATGGTAAAGGCCATTGGGATTTCCAACTTCAATCGTGACCAAATTGAAATTCTATTAAACAAGCCTGGATTGAAGTACAAACCTGCCAATAACCAgATTGAATCCCATCCATACCTGACTCAGGAAAAGCTCGTAAGGTATTGCCAATCGAAGGGGATCTCTGTGACGGCTTACAGTCCCCTAGGGTCTCCAGATAGACCATGGGCCAAACCAGAAGATCCTTCCCTGCTGGAAGATCCAAATATCAAGGCCATTGCTGAGAAGCACAAGAAGTCCACAGCGCAGgttttGCTCCGCTTTCAGATCCAGAGGAATGTCATTGCCATCCCTAAATCCATCACCCCCCAGCGCATTGAGGAGAATTTAAAGATCTTTGATTTTAAACTGGATGATGAAGACATTAAAACTATTCTCAGCTTCAATAGAGACTGGAGGGTCTGTCCAATGCAGTGGAGTGTGAAGCACCAGGACTATCCCTTCAACACAGAGTACTGATGACATGCGCTGGAGAACCAGTGTTGCAGCTTTTCTAGCTGGCTGGGGTGTGTTTGTGATGCATCTGTATACTTATTTCTAGCTTTTGAAATGTAGGCGTGTATCTGAAATCTTATTAGTGGTATATGGTGGAAAAGTTTCTGGGTATGAGTTTACAAATTGGCTGTTTCCTAATGTATACACTCCTCAAAATGCATAGAGGATGGAAATGCTGATCATCCTTTTAACAAGTTGATTTCTAATATACTAATACAATCTATAATGGTGCTGAAATCTTGCATTTGTTAGAAGAGAGCAGTGTGGAGTAATGGTTAGGCAGTGGACTCTGGATCAgatggttgtgggttcaatcccaggggGTCTGAACAGATTGTATCGGATTGAGCCAGTTATATTAGTAAAGATAgtgttatttgtattcattgtcAGAATAAATATGCAGTTAAAACAGTTTCAGAATGCTGtatcattcatgtttttagaTTGGGCCTCCAATGATCCCAGCAGACCACACTCACCCAATATGTGAATAGATTGTGTACAtaatcacctgtaaaatgtataattctgaAGACATTCACTTACAGTGTATGTAACAACTATTTACAATCAAGTCTATTTTAGGAGGCTTCTTAATTCATTTAGTCTAGACTGACACTTCCAGCACTTCCTGTGCCTCCCAGTTAAGAGGAACAGCTGTCCTGGTATCCCATCTAGGAGATTTGAGTTAAATGGCCACTATTTTCGGTAAGGCCCCATTTCAAAATCGTTTGGAGATAGTATATTGAGTCCCTATATATGCAGCTCTGACAATAATAACATAATCAGAATATCCTTTGCATAGTAAATTAAAGATTGGGAGAATtgcctgatttgtttttttccagcaatatataacccccac

Function

NR:

description
uncharacterized protein LOC553452

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0004032 alditol molecular_function

KEGG:

id description
K00011 AKR1B; aldehyde reductase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012976 True 1945 mRNA 0.42 10 15554199 15565616

Neighbor

gene id symbol gene type direction distance location
AMCG00012979 ascl4 coding downstream 16976 15536669 ~ 15537223 (-)
AMCG00012975 pik3cg,LOC106609208,LOC107656384,LOC107583938,LOC107590535 coding downstream 31270 15512472 ~ 15522929 (-)
AMCG00012977 prkar2b,LOC101073002 coding downstream 44677 15492361 ~ 15509522 (-)
AMCG00012969 NA coding downstream 68213 15477886 ~ 15485986 (-)
AMCG00012967 NA coding downstream 141554 15405765 ~ 15412645 (-)
AMCG00012981 slc13a4 coding upstream 5377 15570993 ~ 15595338 (-)
AMCG00012984 NA coding upstream 160378 15725994 ~ 15758670 (-)
AMCG00012989 NA coding upstream 238341 15803957 ~ 15808685 (-)
AMCG00012995 NA coding upstream 348612 15914228 ~ 15924404 (-)
AMCG00012994 h3f3b,LOC106912265,LOC107377396,LOC106963510 coding upstream 385220 15950836 ~ 15955239 (-)
G41243 NA non-coding downstream 275887 15237290 ~ 15278312 (-)
G41224 NA non-coding downstream 318337 15235620 ~ 15235862 (-)
G41191 NA non-coding downstream 476379 15075434 ~ 15077820 (-)
G41138 NA non-coding downstream 631883 14842243 ~ 14922316 (-)
G41102 NA non-coding downstream 817570 14733735 ~ 14736629 (-)
G41369 NA non-coding upstream 893 15566509 ~ 15569851 (-)
G41386 NA non-coding upstream 73263 15638879 ~ 15639990 (-)
G41402 NA non-coding upstream 224676 15790292 ~ 15822009 (-)
G41442 NA non-coding upstream 389819 15955435 ~ 15956038 (-)
G41443 NA non-coding upstream 390483 15956099 ~ 15959544 (-)
AMCG00012931 snrpf other downstream 1209727 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 2438712 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 2647866 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 3282410 12240396 ~ 12271789 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 4691877 10857881 ~ 10862322 (-)
AMCG00012985 NA other upstream 153897 15719513 ~ 15722457 (-)
AMCG00013018 NA other upstream 1064615 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 2314609 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 2364282 17929898 ~ 18046714 (-)
G41807 NA other upstream 2610445 18176061 ~ 18191522 (-)

Expression


Co-expression Network