AMCG00012980


Basic Information

Item Value
gene id AMCG00012980
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15616257 ~ 15618444 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012980
ATGGTCTTGCTCCCTCCGCACTGTGGCTCCTTCTATGTGAAGGAAGGGTCAGGCACCTCCGTGGGCTCAGTACTGGTTTTCCTGTGCCATGAGGGATACCAGCTGGTGGGCAGTGAAATAATAACGTGTATTCTTAAGGCAGAGACCCCCCAGTGGAGCACCTACTTGCCAGTTTGCGAAGCCATCCCCAGGCCCGAGGATCGAGGGCTGCGAGTGGCCGTGCTGGTGTCTATCATTAGCGGGCTTGTTATCCTGACCATGTCTGTGTCCTTCATTATTTGCTGTGTGCAGGACCGACTGAATCACAGCCAAGAGAGGGGAAGGGACAATAAATCCAGGAAGAAGGAAGGCAAACACCGTGCACAAAAGAGAGTCTGCTGGTTTGATCGGGAGGAAGATGAATGGGACAGAATTACACCAAAGACGCTTTCATATCAGCTGGATCCTCAGCTGTCTCCTTTTGACTGCCCTCTGTACCTTGGTGCATGCAATGGTTATGAGAACAGAGGGTACCACAGGAGCCAGGAAAACCTCCTGAAGAGTGCAGGTCCTCGCCTGTATTGTGAAGACCAGGCGTACCCCCATGTGGTGCTTCAGCGAGTGCCAACCCCTACTGCCCCCATCTACCTTCATCTGCCATCTCAGCCTGCAGACCCGCCTTCACAAGTAATGTCAGCCTTCACCAACCCCGGCTACCACAACGCCCACAACACACCTCAGAGACTCTGGCCGTAG

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012980 True 735 mRNA 0.54 4 15616257 15618444

Neighbor

gene id symbol gene type direction distance location
AMCG00012974 NA coding upstream 62205 15545635 ~ 15554052 (+)
AMCG00012972 NA coding upstream 84648 15526034 ~ 15531609 (+)
AMCG00012963 cog5,LOC106609192 coding upstream 140387 15420843 ~ 15475870 (+)
AMCG00012960 NA coding upstream 337010 15274952 ~ 15279247 (+)
AMCG00012962 NA coding upstream 355332 15260248 ~ 15260925 (+)
AMCG00012983 NA coding downstream 12982 15631426 ~ 15639738 (+)
AMCG00012986 NA coding downstream 87154 15705598 ~ 15715080 (+)
AMCG00012988 sap30bp,LOC107725325 coding downstream 225409 15843853 ~ 15859012 (+)
AMCG00012991 NA coding downstream 252648 15871092 ~ 15912709 (+)
AMCG00012990 NA coding downstream 309870 15928314 ~ 15950132 (+)
G41282 si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652 non-coding upstream 56952 15556146 ~ 15559305 (+)
G41265 NA non-coding upstream 132936 15480691 ~ 15483321 (+)
G41230 NA non-coding upstream 328441 15285341 ~ 15287816 (+)
G41225 NA non-coding upstream 330969 15237287 ~ 15285288 (+)
G41226 NA non-coding upstream 351684 15248378 ~ 15264573 (+)
G41303 NA non-coding downstream 101063 15719507 ~ 15722866 (+)
G41325 NA non-coding downstream 240620 15859064 ~ 15859370 (+)
G41469 NA non-coding downstream 455070 16073514 ~ 16074099 (+)
G41484 NA non-coding downstream 502999 16121443 ~ 16124871 (+)
G41517 NA non-coding downstream 714846 16333290 ~ 16333574 (+)
AMCG00012978 NA other upstream 42789 15570906 ~ 15573468 (+)
AMCG00012973 NA other upstream 46314 15566493 ~ 15569943 (+)
AMCG00012961 NA other upstream 298913 15297962 ~ 15317344 (+)
AMCG00012954 NA other upstream 479528 15081419 ~ 15136729 (+)
G41059 NA other upstream 982844 14632357 ~ 14633413 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other downstream 2291 15620735 ~ 15631003 (+)
AMCG00012987 NA other downstream 163920 15782364 ~ 15791627 (+)
AMCG00013015 NA other downstream 1100911 16719355 ~ 16729533 (+)
AMCG00013047 NA other downstream 2540398 18158842 ~ 18230238 (+)
AMCG00013068 NA other downstream 3348985 18967429 ~ 18974362 (+)

Expression


Co-expression Network