AMCG00012981 (slc13a4)


Basic Information

Item Value
gene id AMCG00012981
gene name slc13a4
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15570993 ~ 15595338 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012981
ATGAAGCTGAAGACCGACAGGATGAGCGTATTGAATAAGCTGTGGACCGCAAGGAAGCTGCTCCTGGTTGTCCTCATCCCCCTGTTCCTGCTCCCGTTGCCCCTCATCTACCCGTCCAGTGAGGCCTGCTGCGCCTATGTGCTCATCGTGACGGCGGTCTACTGGGTGTCAGAAGCCGTTCCTCTGGGTGCTGCTGCGCTTGTGCCAGCCTTTCTCTACCCACTTTTCGGGGTCCTCAAATCCAGTGAGGTGGCTGCTGAATATTGCAAAGACACCACTCTGCTGCTCATTGGGGTCATCTGCCTGGCTGCCTCCATCGAGAAGTGGAATCTGCACAAGCGGATCGCTCTGCGCATGGTGATGATCGCAGGGGCCAAGCCTGGCATGCTTGTGTTAGGATTCATGTGCTGCACAGTGTTCCTCTCCATGTGGCTCAGTAACACTTCCACGACGGCCATGGTGATGCCCATAGCAGAGGCTGTATTGCAGCAGCTGATCAGCACCGGGATCTGTGATGCGGTGGACGACTCAGAGAGCATGGAAGCACAGGAGGACACTGACAAGGAAGGAAATATTGACAAGAACCAGCTTGAGCTCCTCTTTCAGACACACAGctgtaCAAAGAGTGATCTTATCACTATGCCTGAGGAGTTGAATGGCATGTCACTCAAATGCAATGATGAGGTGATAAACTGGCAGCACAATGGACACCTGCCCCAGACACAGATCATCATACCTGAGCCCCAGAAGAAGCAGACTTCCTTATATCCAACCAAGAAGGACCATATGATCTGCAAGTGCCTGTCCTTAAGCATTACCTATGCAGCAACCATAGGAGGTTTGATCACCATCACTGGCACGTCCACCAATCTGATCTTCGCAGAGCATTTCAAAAGcCGGTACCCTGATGCAAATGTGATCAACTTTGGGACCtggtttgtcttcagtttaccAATCGCGCTCATCATGCTAGTTTTGACATGGATCTGGCTGCACTGTTTGTTCTTGGGTTGCAATTTCAGAGACACCTGCTCCCTCAGCAAGAAACGCAAAACCCGGCGAGAGGATTACCCTGAGATTGTCACTGGGATCTTCTTCATCCTCATGACCCTGCTGTGGTTCACACGTGAGCCAGGGTTTGTGCCTGGCTGGACCTCCCTGTTTGAGAAGAAGGGATATCGCACAGATGCCACGATCTCTGTGCTGTTGGGATTTCTGCTCTTCTTAATACCTGCTAGAAAACCCTGGCCGTGTTCATCAAAAAAGAAAGACCAAGAAGGAGGCAGTCCAGGGAACGATGTTGACTCTGACCCCATGGCCCCCATGATAACCTGGAAGGACTTCCAGAAGTTGATGCCCTGGGAGATTGTCATTCTCGTGGGAGGCGGTTACGCCCTGGCAGCTGGGTGCAAGGTGTCAGGATTATCTGTGTGGATTGGAAGACAGATGGAGCCAATGAGCGGGCTTCCTCCGTGGACAGTGACACTACTGGCCTGTCTTCTTGTTTCTACAGTTACTGAATTCGCCAGTAACCCAGCCACCCTGACTGTCTTCTTGCCCATTCTCTCCACACTATCGGAGACCCTGAAGATCAACCCCCTGCACACCCTGATTCCAGCCACCATGTGTGTGTCATTTGGAGTCATGCTGCCCGTGGGCAACCCCCCCAATGCCATTGTGTTCAGCTATGGGCACTGCCAGATTAGCGACATGGTGAAGGCGGGCTTTGGGGTGAACCTGATCGGAGTGGTAGTGGTTATGCTGGCCATCATGACGTGGGGCGTTCCCCTGTTTCAGCTGTCCGAGTTTCCAGACTGGGCGTTGCAAAGGAATGTGACGGACAGCATCTAAAGCCATTGCAAAACTGGGGTGAAGGTGCAGTCTGGGGGGCATGTAGGGGAGGAACAGCCTACATGAGGAATTGCAATGCCAGTCCTGCACATTCACTCGATCATCCCTCAAAAAGAGCTTAATCTTTCAGCAATCACCACATCCAGCTATCTCTTCATCACGCGATTGGTGGTTTTGGAAACCCGATGAGCACTAAATCAGTCGGGATCTGGATCTTAGAGAGCATGACATGACTTCGAAGATTTTCCTTTGGCTGACTTAAATGTTGCACCTTTGGTTGCTTTCACAGCTACTTGGGTgtcacacataaaaacatgatgtCATTTGCCCCGTTCTCTACCTTTCTGATCCAGGAAACATGTCAAATGCTTGCTTTAAAACACTAGTTATCCTTGTCCTTTCTGAAGGCCATTAAACTGCACCTAACTTCCAACAAAAAAGACTGCAGATACTTCCACTGCTTTGAAACTTGAAATTGCAAATATAATTCTCTACGTTATGTGCCATGTTTTCAGTGCTTCTGGTTCTCGCACTTGAAAATAAATTCCCCAAGGGTTTGCTCCAAAGAGGCGGAATCGAGGCATCATAGTGGAACAAAGAGAGATGGGAAGTACATAACTGGCCATCGCTGTTCCTGGAGAGATGTCACACGGCAGGTTGTATTGATATCTGTATGTCAACAGTCGCTAAAAACCTGAAGCATATGGTCAATATCTTTAGTAAACACTTTGATAGAACAAACTAGAAGATCCTGAATCTTTCTAAGTGAATAGTCCTCCTATTGCCATTCTGTCTATGTCCTGTGCGTCTGTGAGAAGATGTACTTTGCACCTCCTGCGGTTCCATAGTGTGAGGTTTCATATCCACCAGCTACAGCAACACAACGTTGTCACCAGTTTATGTAGAAAGTGAGGACAGCAATACCCTCCACAGCCCAGGACCAATCTATCTTTGACATGAGCACAAGCATCACAGCCTTCAGTAATGAATCCTAATATATTTTCTCTACATGGTTCCTTCCTACAGATAAGCTAGGTATTTCCGGAACTGAATATATGGTTTAACTGTTTCACCTCTTGATATGGCTTCTTTAATTTTGGTGCTAGTGACAAACACAGGAGAGAAGACATTGGGATAATTAATGTGAACCAAAGATAACGTACACTGAGGAAATGTAAACCttgttattccctcatttgaCAGTTAAAAGAAACCCCAATTCCAGTGAGAACGACACAATACTTTAATCAAATTAAGATTGTTTATatcagtgtttcccaaccaaaatgtgtaaaagtaacacacaagaaaaataaaaagaagtcacatgtttttttcacttatttaagTTAAAGAAACTCCAGCCCAGATTCAACATCTCTGGACAGAGCAACTCAAGCATTTCATTGAAAGTGAGGCTTGTTTTAAGTTGTGGTGTAGGTTTGCTTTATGctggaaaagattaaaaataaaagatttgaCCTCCTGCAGGGTGAAAAACACTCTCTGTAATACAAAGCTTCTAGATGTTTAGttaaatattctgtattttatcagaatgaaaataaacagccaGCATGAGGGTATCTAAACCTGCTCCTGGAGACCTACAGAGTTGCCTGGTTTTAATTCAAACCAAGTTTTCAATTACACAACCGGACTAGTGATTTATCCTCCGTAGATTAGCATGGCCTTATCCCTCCGATTGAAGAGGTCTGCAGCTCACTAGACCTAGGCCAATCGTATTCATAACAAACCACATTTTCAGACAAGATGTCTTGtgaaaaaaagttatttgtgaCAATAGATAGTCTTAATGTgtttcttatacattttttgcagtGTTGGGGACACAATTTATCAGCAAACCAGTCGATAAACAAGATCATTAATGCAACTTTAGTAGCAGGGTcataaattcacattttattatacaatcATTATAGATTTAACATTTTCCCACAGAAGCTAATTCATTGTGTTTCTTGTATCTGAAGACACCAGGTATTTATATGCCTGCTTTACAGTGTATCAAAAAGTTAATGTTGTCTCAgctgtactgtaaaataaatacataatttatacatGGTAGTTAATATTCTCTCCAATTTTAGGACATAAACAAAAACTAGCTAGATCAATTAATATCTTAGCAATCACATAGATGATAGCAATGCCATCTTTCATTCAATACAATCTGTAAATGATCAATATGGATTAGATTTGTGTATTGGGAGTTGTAAAcccagtgattttatttatttaatttacacatgaatgtattataattgtatgtaaccATGTGCctttttaatattgttgttttatataatgaagattgatacaatacaaaattaccAACAGAGACTTGACCACTGTAacatctacatttaaaaatcattaaaaaataaaaacgtatttCTATCTTTTTGTGAAACCTTCTTTGCTGCAAAGCAGTCAAGTGTAATGTTGTTATCAGAAGAACCTTGATTTAATTCCATTATGGAAACATTAATAGGCCAACTAACTTCATAACCTTGTGATTCCAGCAGCCTCAGAACTACATGCGTTTTGTGAGGAAAGTTAAACTCTATACAGGCAGATGCACAGTTTTCCCCAAAGCAAACACATAGGTAAGACCATCATCAAGAAATAACTCCAGATAGGCATGTAATAGCATTAGTTCTTTAATGTATATTCTGGTAGGAAACAGCTTCATTAAAGCAAACTGACATTGCATTGATCAAGCACTCTGTCCTGTTGCTGGTTGACCAAGTTAAATTCCTAAATTATCAGTGGTTTTCTGGAAGGAAGAACATTAAAGGAGCATGACTTTTTGTTACAAAACCAGCCCCCTTCCCAATAAGAAATGGGACATGTCCAGGCCATGTGACCATGCAACACTTCCAGTCAACCCCCCTGCAGGACCCCTCTACAACAAGCccttcaattatttaaataatcacagGTTCAAGTACCAAAAGTACAAGAATTTCTGTTGCCAGTTCTGAGATCAAGAGTCTGAAAGGATGGCCGTCTCAAGTAAAGTGTTCTCTGGTGAAAAAGCACAAACCACTAACACGTGCTTTGACCTCTCATACAGCGCATAAACGGGTTATGGTGACTAAGAGCGTCTCCTCTATACCGCACTCCTTTCCTCCACAGATGGTACTATAATTTGGTAGACTGGTCCACAGGCTCAAACCCCTCTGTTTGAATCCTTTCCTTGTACTTCAAAAAGTCTCTTcgtttattgaaatatttcacCCACTGAGCTGGACAGCTGGACTCAAACTGCTTTCGCAGCTTCTCGCAGTGTGTCCCTTTATCCTCATTCTCATCCAGGCATCGCCATAACTCATCTCTCGCCCGCCAGCAAACCCGCCTCTCTTCTGCATTTGGAGCTGACATTGCGTGAGGTTTTTGCAAAATCTTTCcacaaataattgaaaactatATTGTACGAACTGAATCCATGTTTTCCTTCACTACATGACCCACATTGAGGACAAGATCCCGGAAGTACTTTTTA

Function

symbol description
slc13a4 Predicted to enable transmembrane transporter activity. Predicted to be involved in anion transmembrane transport. Predicted to act upstream of or within sodium ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SLC13A4 (solute carrier family 13 member 4).

NR:

description
PREDICTED: solute carrier family 13 member 4

GO: NA

KEGG:

id description
K14444 SLC13A1_4; solute carrier family 13 (sodium/sulfate cotransporter), member 1/4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012981 True 5383 mRNA 0.43 18 15570993 15595338

Neighbor

gene id symbol gene type direction distance location
AMCG00012976 si:dkey-180p18.9,LOC107725652 coding downstream 5377 15554199 ~ 15565616 (-)
AMCG00012979 ascl4 coding downstream 33770 15536669 ~ 15537223 (-)
AMCG00012975 pik3cg,LOC106609208,LOC107656384,LOC107583938,LOC107590535 coding downstream 48064 15512472 ~ 15522929 (-)
AMCG00012977 prkar2b,LOC101073002 coding downstream 61471 15492361 ~ 15509522 (-)
AMCG00012969 NA coding downstream 85007 15477886 ~ 15485986 (-)
AMCG00012984 NA coding upstream 130656 15725994 ~ 15758670 (-)
AMCG00012989 NA coding upstream 208619 15803957 ~ 15808685 (-)
AMCG00012995 NA coding upstream 318890 15914228 ~ 15924404 (-)
AMCG00012994 h3f3b,LOC106912265,LOC107377396,LOC106963510 coding upstream 355498 15950836 ~ 15955239 (-)
AMCG00012999 NA coding upstream 375794 15971132 ~ 15999882 (-)
G41369 NA non-coding downstream 1142 15566509 ~ 15569851 (-)
G41243 NA non-coding downstream 292681 15237290 ~ 15278312 (-)
G41224 NA non-coding downstream 335131 15235620 ~ 15235862 (-)
G41191 NA non-coding downstream 493173 15075434 ~ 15077820 (-)
G41138 NA non-coding downstream 648677 14842243 ~ 14922316 (-)
G41386 NA non-coding upstream 43541 15638879 ~ 15639990 (-)
G41402 NA non-coding upstream 194954 15790292 ~ 15822009 (-)
G41442 NA non-coding upstream 360097 15955435 ~ 15956038 (-)
G41443 NA non-coding upstream 360761 15956099 ~ 15959544 (-)
G41444 NA non-coding upstream 364338 15959676 ~ 15960333 (-)
AMCG00012931 snrpf other downstream 1226521 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 2455506 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 2664660 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 3299204 12240396 ~ 12271789 (-)
AMCG00012856 lsm8,LOC107592220,LOC107580766,LOC107656302 other downstream 4708671 10857881 ~ 10862322 (-)
AMCG00012985 NA other upstream 124175 15719513 ~ 15722457 (-)
AMCG00013018 NA other upstream 1034893 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 2284887 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 2334560 17929898 ~ 18046714 (-)
G41807 NA other upstream 2580723 18176061 ~ 18191522 (-)

Expression


Co-expression Network