AMCG00012983


Basic Information

Item Value
gene id AMCG00012983
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15631426 ~ 15639738 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012983
aaaaaaaaaaaaaaacaacaacacaaaaagaggGTCTTGAGTTTTTAAACGCGGCGGGGGAAAacatcaaaaccaaaacagcGTACCAGAATTGATAATAGTTTTTACTGAGCAAAAAGTAAGGAACTAGCGTGTTCGATCTGACTGGTACGGAATCGTTTGTTCGAACGATTACGTACATGAATCTAGAACTTATCATTCTCTCACCAACTTTGGTTTACTGATGATTTAGAAGAGCAACTAATTTTATAGGACTGCAAACCAAGAGCTGACAACGTAGCgggttttttttaagtgtgttgaTTTAATCGCCATACCAGTCATACACGATCCTTTTTATAGTCCTGCATACTATTCGGGGTCATCGGAGCGCTCGTACTGTACCTCTATGGAGATACTGGACAGTGGAGACCCGCTGTTGCACTGGGACAGGAATCTCAGCGAGCTCTCTGACCCCGGAGACAGCGACCATGGGCTGTACAATACACACTTCACCGAGCTCATGGATGATTTTTCCCAAGATGCTCTGCTGGGACAGCTGTTGAGGGACCCCTTTCTGTCGGGCCAGGGGGAGACTCTGGACACAGAAGAAGACCTGGCCGCTTCCCCTCCACCGCCACACATCCAGGCAGAACACAGCTACTCCCTGAGCGGGGACTCCCGGCCCCAGTCACCCCTCTCACACCTCCCTGGGGACGGGACCAGTGATGGAGGAGAGACGGACGGTGAAGGTTGGCCTATGGAGATCGACGAGAAGGTGCTTAAGATGGAGCCGATGCTATGCGAGTCCCCTGGCCTCCTCCCTGCTCTCGCACTCGGCCTAATCTCAGACAAGGCCGTTAGTGAGTCTCCCTCCCCTgctctctccctgcctgtctTGGTCTCCCAGCCTGCACAAGTTCAGGTGATCAAGTTGAAAGAAGCCGCTGAGAAGTTCACCCCCAAAATTAAGCTGGAGCCACATGAAGTGGATCAGTTTCTGAACCTCTCCCCTAAAGGTCTGGACTCCTTGAagctgccccccaccccaccaagCTCTCATGGCAGCGATTCAGAGTGGAGTCAGAGTCCTACCCGGCCCTGCCCCCCCTCCAGCCCCACGCAGTCTCAGGCTGTCCTTAAAGTGGCCCCGCTGGGACCTTCCTCCCTCACCAACTCTCCACTGCTCACTGCTCCACACAAGCTTCAAGGCACCGGGCCCCTCCTTCTCACAGAGGAGGAAAAGAGGACGCTGATCGCTGAGGGCTACCCTGTTCCCACCAAACTCCCTCTCTCCAAAGCTGAGGAAAAAGCCCTGAAGAAAATccgcagaaaaataaaaaacaagATATCTGCTCAGGAAAGccgaagaaagaagaaagagtaCATGGATGCGCTGGAGAAAAAGGTGGAAACGTGCTCCAATGAGAACAGTGAACTGCGCCGCAAAGTCGAGACTTTGGAGAGCACCAATAAGtctctcctgcagcagctgcacTGCCTGCAGGCCGCAGTTGCTGGCAAGGTCCCACGCTCCTGTCGAGTCACTGGCACCCAAACCACAACCTGTCTTATGGTTGTGGTGCTCTGCTTTGCATTCTTCTTGAGCAATTTTCCTCAGAGTTTTGGCCCCTGCTCCTCCATTGCCAAAACTAGCCTACCCAGTCAACTCACATCTCAGGAGTCTTACACAGCCACAGtGAAATCCAGGAGCCTCCTGGGTTATGAGGATCGCAGTGGCTTTGAGGAGCCGCACCCCTCTGGGCTGGCGGGGGAGAATGTGGAGAAGTGGGACAGGCGACCTGATTCCATATCAGCCTGGCACAGAGAGCAGCAAGCCTCGGAGAGACACGTAGCAGCCGAACCGCACACGCGGTACCTGAACAGCAGTGACTCGCACCTGAAGAAAGCCATACTTATAGATGTTCATCCTCACAGATCCCATTTGGAGCAGCGGGCAAATGAGACCACAAAAGTGATTGAGCTGGAGAGAACAGTGAATAAAACCTCCTGAGGTCTCCATTCCAGCAGCCCCCTGTGCCATCGCCGTGTCGGAGGCTTCTGCAGGCCACTGTGTCAGAGGCTGGAAActcttgtatttaaatatgctaTTTTTTACacatgtagattttttttaagtgtattttattccattctGTTATTATAttctacattattattcactcttaaacatgtgttttatagttgtatttctttgtttttttcattttaagcaaCAATGTAACTGCTTAGATTGATTTgataaatgtatctttttacTCTTAAGGCAtgatattttttcaaaaaagac

Function

GO:

id name namespace
GO:0034976 response to endoplasmic reticulum stress biological_process
GO:0060628 regulation of ER to Golgi vesicle-mediated transport biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0002062 chondrocyte differentiation biological_process
GO:0003330 regulation of extracellular matrix constituent secretion biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0044425 obsolete membrane part cellular_component

KEGG:

id description
K09048 CREB3; cyclic AMP-responsive element-binding protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012983 True 2290 mRNA 0.50 12 15631426 15639738

Neighbor

gene id symbol gene type direction distance location
AMCG00012980 NA coding upstream 12982 15616257 ~ 15618444 (+)
AMCG00012974 NA coding upstream 77374 15545635 ~ 15554052 (+)
AMCG00012972 NA coding upstream 99817 15526034 ~ 15531609 (+)
AMCG00012963 cog5,LOC106609192 coding upstream 155556 15420843 ~ 15475870 (+)
AMCG00012960 NA coding upstream 352179 15274952 ~ 15279247 (+)
AMCG00012986 NA coding downstream 65860 15705598 ~ 15715080 (+)
AMCG00012988 sap30bp,LOC107725325 coding downstream 204115 15843853 ~ 15859012 (+)
AMCG00012991 NA coding downstream 231354 15871092 ~ 15912709 (+)
AMCG00012990 NA coding downstream 288576 15928314 ~ 15950132 (+)
AMCG00012993 NA coding downstream 317083 15956821 ~ 15957000 (+)
G41282 si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652 non-coding upstream 72121 15556146 ~ 15559305 (+)
G41265 NA non-coding upstream 148105 15480691 ~ 15483321 (+)
G41230 NA non-coding upstream 343610 15285341 ~ 15287816 (+)
G41225 NA non-coding upstream 346138 15237287 ~ 15285288 (+)
G41303 NA non-coding downstream 79769 15719507 ~ 15722866 (+)
G41325 NA non-coding downstream 219326 15859064 ~ 15859370 (+)
G41469 NA non-coding downstream 433776 16073514 ~ 16074099 (+)
G41484 NA non-coding downstream 481705 16121443 ~ 16124871 (+)
G41517 NA non-coding downstream 693552 16333290 ~ 16333574 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 423 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 57958 15570906 ~ 15573468 (+)
AMCG00012973 NA other upstream 61483 15566493 ~ 15569943 (+)
AMCG00012961 NA other upstream 314082 15297962 ~ 15317344 (+)
AMCG00012954 NA other upstream 494697 15081419 ~ 15136729 (+)
AMCG00012987 NA other downstream 142626 15782364 ~ 15791627 (+)
AMCG00013015 NA other downstream 1079617 16719355 ~ 16729533 (+)
AMCG00013047 NA other downstream 2519104 18158842 ~ 18230238 (+)
AMCG00013068 NA other downstream 3327691 18967429 ~ 18974362 (+)
G41978 NA other downstream 3385823 19025561 ~ 19029278 (+)

Expression


Co-expression Network