AMCG00012987


Basic Information

Item Value
gene id AMCG00012987
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 15782364 ~ 15791627 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012987
cagaaacaaaaaaaaaaagatctggcAGTCTAGAGCAGCTGGCTGAAaaagacgagagagagagagagagagagagaggcacagcaATGCAAGCACAGAGGAGCACACAGAGGAGATAAACAACCGACGAAAAGGAAGCCCACTTCATGATTATCAGAGACATTGGAAAAGTATATTAAGATCGATTCATGACTGTTGAGAGAGAGGAGTGggaaaagtattttgttaacaGTAGGTGGAGGCTCTCAGTGTCAGACTGCTTCCAGCCTGCATTTTGCATGTTTCAACATCTAACAAAAGAGCCCAGGAAGAAAGAGGCAAGTGGAGAAGCACATTCCTTTGTAGTCACCACGCCAGGTGGCAGCAGGGCTCAGGAAGTGCCCCGTCACTGAACACTGTGGCAGTCAGCTGTGAGGGGCACTGGCACTCTCTGCAGCTCCCCAGCAGACACAATGGACAAAGCCACAGTTCAGCAAGTGACGTGGAGTGGGAACGCCTAGTTGGGAAGAGGGGAGATACCTAGCAGTCCTGCTTTCTGCCTGTTGAAAGTGGTACAAACGGTCTTTTGGGTTCTACACAGATTTGGTTACTCTCTGTGAATACTGTTGCTACACCAAGATGCCCTGGAGGGAGGAGATTTTGGACATAAGTCAGCGGGTGTGGACCAAACTGCAGGGCCTTCCTGAGGCCAATCCCCTGGATCTGGGTGCCTTCCTAATCCTCATCATCTTCATCGGAACATTCCTTCTGATGTGTGTTCTGGCCTGTGTacactgctgttgctgtgccaAACCCAAGTACCACGTGTCCAGAGTCAAACCACTGCACCCTGTCTGAGAGCAGGAGCCCTTTATGACATCATGGGCACTACAGGTCCAATGGCCCCTGCACACCACCAACGGCCTCCGCACAGCCCCAGAGAACAATACACAGGCTGGAGCACTGACAGTCCTCCCTGTGATCAACAGCGACCAGACTCACAGCACTGACTCAagtgattatgattattttcacTAATTGTAAGGAAGCTGATCTTTGGCCTCCAAGGATCTCACACTGCACTGGACAACATTTAAATGGATCAATACATGTGGGGATGGTGACTCAAAGTGACGGTGACAATGCAGAGTGCAAATGAGACATATGCTacattgaaaaacatatataatattaattggAGAGAACTAAAGACCTTTTGACAATTTAAATGCGATCACTGCATGATCAGCTTCTACGAACCTTTCAGAGGGAACACCCTATGCCACAATCTACTCCCATTTAAAGTAAGCTTACACAACTTGGGATGTCTCTACACAGGACCCTCACACACTGAAGGATTATGTTCTATGATGTTCCCTGTTCAACAGTTCACTTTCATCAATGACTTCTCAATTTCTGTTATgtactgcacattttaaaatagattgtAGTTCAAAATCAGGTGTTAACAGTTTGTACTGTTTGTTAtgatgaagaaaacaaaagtacaatttTGCCATGCAATAGTTTTCTGTGACTtttccaggaaaaaaa
>TU51492
agagagagagagagaggcacagcaATGCAAGCACAGAGGAGCACACAGAGGAGATAAACAACCGACGAAAAGGAAGCCCACTTCATGATTATCAGAGACATTGGAAAAGTATATTAAGATCGATTCATGACTGTTGAGAGAGAGGAGTGggaaaagtattttgttaacaGTAGGTGGAGGCTCTCAGTTCAGCAAGTGACGTGGAGTGGGAACGCCTAGTTGGGAAGAGGGGAGATACCTAGCAGTCCTGCTTTCTGCCTGTTGAAAGTGGTACAAACGGTCTTTTGGGTTCTACACAGATTTGGTTACTCTCTGTGAATACTGTTGCTACACCAAGATGCCCTGGAGGGAGGAGATTTTGGACATAAGTCAGCGGGTGTGGACCAAACTGCAGGGCCTTCCTGAGGCCAATCCCCTGGATCTGGGTGCCTTCCTAATCCTCATCATCTTCATCGGAACATTCCTTCTGATGTGTGTTCTGGCCTGTGTacactgctgttgctgtgccaAACCCAAGTACCACGTGTCCAGAGTCAAACCACTGCACCCTGTCTGAGAGCAGGAGCCCTTTATGACATCATGGGCACTACAGGTCCAATGGCCCCTGCACACCACCAACGGCCTCCGCACAGCCCCAGAGAACAATACACAGGCTGGAGCACTGACAGTCCTCCCTGTGATCAACAGCGACCAGACTCACAGCACTGACTCAagtgattatgattattttcacTAATTGTAAGGAAGCTGATCTTTGGCCTCCAAGGATCTCACACTGCACTGGACAACATTTAAATGGATCAATACATGTGGGGATGGTGACTCAAAGTGACGGTGACAATGCAGAGTGCAAATGAGACATATGCTacattgaaaaacatatataatattaattggAGAGAACTAAAGACCTTTTGACAATTTAAATGCGATCACTGCATGATCAGCTTCTACGAACCTTTCAGAGGGAACACCCTATGCCACAATCTACTCCCATTTAAAGTAAGCTTACACAACTTGGGATGTCTCTACACAGGACCCTCACACACTGAAGGATTATGTTCTATGATGTTCCCTGTTCAACAGTTCACTTTCATCAATGACTTCTCAATTTCTGTTATgtactgcacattttaaaatagattgtAGTTCAAAATCAGGTGTTAACAGTTTGTACTGTTTGTTAtgatgaagaaaacaaaagtacaatttTGCCATGCAATAGTT
>TU51493
agagagagagagagaggcacagcaATGCAAGCACAGAGGAGCACACAGAGGAGATAAACAACCGACGAAAAGGAAGCCCACTTCATGATTATCAGAGTTCAGCAAGTGACGTGGAGTGGGAACGCCTAGTTGGGAAGAGGGGAGATACCTAGCAGTCCTGCTTTCTGCCTGTTGAAAGTGGTACAAACGGTCTTTTGGGTTCTACACAGATTTGGTTACTCTCTGTGAATACTGTTGCTACACCAAGATGCCCTGGAGGGAGGAGATTTTGGACATAAGTCAGCGGGTGTGGACCAAACTGCAGGGCCTTCCTGAGGCCAATCCCCTGGATCTGGGTGCCTTCCTAATCCTCATCATCTTCATCGGAACATTCCTTCTGATGTGTGTTCTGGCCTGTGTacactgctgttgctgtgccaAACCCAAGTACCACGTGTCCAGAGTCAAACCACTGCACCCTGTCTGAGAGCAGGAGCCCTTTATGACATCATGGGCACTACAGGTCCAATGGCCCCTGCACACCACCAACGGCCTCCGCACAGCCCCAGAGAACAATACACAGGCTGGAGCACTGACAGTCCTCCCTGTGATCAACAGCGACCAGACTCACAGCACTGACTCAagtgattatgattattttcacTAATTGTAAGGAAGCTGATCTTTGGCCTCCAAGGATCTCACACTGCACTGGACAACATTTAAATGGATCAATACATGTGGGGATGGTGACTCAAAGTGACGGTGACAATGCAGAGTGCAAATGAGACATATGCTacattgaaaaacatatataatattaattggAGAGAACTAAAGACCTTTTGACAATTTAAATGCGATCACTGCATGATCAGCTTCTACGAACCTTTCAGAGGGAACACCCTATGCCACAATCTACTCCCATTTAAAGTAAGCTTACACAACTTGGGATGTCTCTACACAGGACCCTCACACACTGAAGGATTATGTTCTATGATGTTCCCTGTTCAACAGTTCACTTTCATCAATGACTTCTCAATTTCTGTTATgtactgcacattttaaaatagattgtAGTTCAAAATCAGGTGTTAACAGTTTGTACTGTTTGTTAtgatgaagaaaacaaaagtacaatttTGCCATGCAATAGTTTTCTGTGACTtttccaggaaaaaaataatatatatatatatatatatatatatataatttttttctcagAATTGGAGAAAAATGAATTTTCCAAGTCTTTCTGGAAGACACAAAATagacacagtatatatattaaaaaagacaaaaatattcTCCAAGGGCAGCTAAAACTTCAATGCTAACTTGGTCATGCCTGCAGATATATGGAACTAAACTCCCTCATTGTGCACCATAGGGAGAACAATTACAACTATTCCTCCAAGAACATAACCTCAAAACTGCTTAAGGAAGTACAGCCAAAAATGACAGAAGAACTCTAGTGCTTGAATCGCAGCAATATCCAGCTTATACCAGACATCAAACACTGCTGTGCTTTCACAGAGCTTCTTTGAAAACATGGCTGCCTGTGTTGGACTTGTTTAGGGTGATAAGTTGAGTAAGAAATAGGGCAAAGAAAAATCCCACATAAATAAAGGTTCAgggtgggttttttttttgtttcatttattctGGATTTTGGACTTCGTGCTGGTTTACAAACAAGTGTCTTTTTTCTTCCAAGAACAAACATTATAAAGATATTTTGATATTTGAGACTCACTGTTTGGGCTTTGGTATCACCATAGTTAATACTGCACTTTCCTGTGTCCCCAGCCAGGGAGGAAATATGTGCACCTTATATTGCTGGCTCtttaaattttattaaaattaaaagtatattattttatattttttaaatgaacgtACACAGCTGTTGTCTCTTTATGTTGTGCAGAATACACCAACACCTGAAAATGTTACTATGAATACAGAATACTAAATTCAAGAAAGAGATAATGGTCTAGTATAAGTCTTTCCTTTTGTGGTTGAAACATCTTCTAGGACAGACATTCCAAATTATAGGATTTTCCAATTCTAAACTTAATTACAGTGGAACTATGCATTCAGTTAATTTAAGCCATAAGTCTGCAACTAAATATACATGAAGGATCAGTAGATGGTGTTCCATTTATAAACCtccaaatatttagttttaaaaaaataagctgaCTCGCATATGATGGCATTACGAAAACTGCATTACTCAGTATtgaaataaattgctttttttattttaaagactgcCTTTGTTATCACCTAGGTTTCAGTgtggaaataatgttaaacgtgcaaaaaggaaaaacagtgcAACGTGATTTAATTCAGTGAGTTTTCAGAAAACACATGTATTAAAGAATcacaaaatacttttctccatttatatTGCAATCTAATTAGTGTATTCAGTACAATTTGCCCATGGACAATAGAGGgtgaagcagaaataataatagatgtTCGACATTTGACAAAGCCAGAAACTGTTAGTTTTATAATACTATCGGACATTTCTAGGTGCTGTTTTCAGGAAAATCacttaaacatatatatacctacagtgaggggaaaaaagtatttgatcccctgctgattttgtacgttt
>TU51494
agagagagagagagaggcacagcaATGCAAGCACAGAGGAGCACACAGAGGAGATAAACAACCGACGAAAAGGAAGCCCACTTCATGATTATCAGAGACATTGGAAAAGTATATTAAGATCGATTCATGACTGTTGAGAGAGAGGAGTGggaaaagtattttgttaacaGTAGGTGGAGGCTCTCAGTGTCAGACTGCTTCCAGCCTGCATTTTGCATGTTTCAACATCTAACAAAAGAGCCCAGGAAGAAAGAGGCAAGTGGAGAAGCACATTCCTTTGTAGTCACCACGCCAGGTGGCAGCAGGGCTCAGGAAGTGCCCCGTCACTGAACACTGTGGCAGTCAGCTGTGAGGGGCACTGGCACTCTCTGCAGCTCCCCAGCAGACACAATGGACAAAGCCACAGTTCAGCAAGTGACGTGGAGTGGGAACGCCTAGTTGGGAAGAGGGGAGATACCTAGCAGTCCTGCTTTCTGCCTGTTGAAAGTGGTACAAACGGTCTTTTGGGTTCTACACAGATTTGGTTACTCTCTGTGAATACTGTTGCTACACCAAGATGCCCTGGAGGGAGGAGATTTTGGACATAAGTCAGCGGGTGTGGACCAAACTGCAGGGCCTTCCTGAGGCCAATCCCCTGGATCTGGGTGCCTTCCTAATCCTCATCATCTTCATCGGAACATTCCTTCTGATGTGTGTTCTGGCCTGTGTacactgctgttgctgtgccaAACCCAAGTACCACGTGTCCAGAGTCAAACCACTGCACCCTGTCTGAGAGCAGGAGCCCTTTATGACATCATGGGCACTACAGGTCCAATGGCCCCTGCACACCACCAACGGCCTCCGCACAGCCCCAGAGAACAATACACAGGCTGGAGCACTGACAGTCCTCCCTGTGATCAACAGCGACCAGACTCACAGCACTGACTCAagtgattatgattattttcacTAATTGTAAGGAAGCTGATCTTTGGCCTCCAAGGATCTCACACTGCACTGGACAACATTTAAATGGATCAATACATGTGGGGATGGTGACTCAAAGTGACGGTGACAATGCAGAGTGCAAATGAGACATATGCTacattgaaaaacatatataatattaattggAGAGAACTAAAGACCTTTTGACAATTTAAATGCGATCACTGCATGATCAGCTTCTACGAACCTTTCAGAGGGAACACCCTATGCCACAATCTACTCCCATTTAAAGTAAGCTTACACAACTTGGGATGTCTCTACACAGGACCCTCACACACTGAAGGATTATGTTCTATGATGTTCCCTGTTCAACAGTTCACTTTCATCAATGACTTCTCAATTTCTGTTATgtactgcacattttaaaatagattgtAGTTCAAAATCAGGTGTTAACAGTTTGTACTGTTTGTTAtgatgaagaaaacaaaagtacaatttTGCCATGCAATAGTT
>TU51495
agagagagagagagaggcacagcaATGCAAGCACAGAGGAGCACACAGAGGAGATAAACAACCGACGAAAAGGAAGCCCACTTCATGATTATCAGAGTTCAGCAAGTGACGTGGAGTGGGAACGCCTAGTTGGGAAGAGGGGAGATACCTAGCAGTCCTGCTTTCTGCCTGTTGAAAGTGGTACAAACGGTCTTTTGGGTTCTACACAGATTTGGTTACTCTCTGTGAATACTGTTGCTACACCAAGATGCCCTGGAGGGAGGAGATTTTGGACATAAGTCAGCGGGTGTGGACCAAACTGCAGGGCCTTCCTGAGGCCAATCCCCTGGATCTGGGTGCCTTCCTAATCCTCATCATCTTCATCGGAACATTCCTTCTGATGTGTGTTCTGGCCTGTGTacactgctgttgctgtgccaAACCCAAGTACCACGTGTCCAGAGTCAAACCACTGCACCCTGTCTGAGAGCAGGAGCCCTTTATGACATCATGGGCACTACAGGTCCAATGGCCCCTGCACACCACCAACGGCCTCCGCACAGCCCCAGAGAACAATACACAGGCTGGAGCACTGACAGTCCTCCCTGTGATCAACAGCGACCAGACTCACAGCACTGACTCAagtgattatgattattttcacTAATTGTAAGGAAGCTGATCTTTGGCCTCCAAGGATCTCACACTGCACTGGACAACATTTAAATGGATCAATACATGTGGGGATGGTGACTCAAAGTGACGGTGACAATGCAGAGTGCAAATGAGACATATGCTacattgaaaaacatatataatattaattggAGAGAACTAAAGACCTTTTGACAATTTAAATGCGATCACTGCATGATCAGCTTCTACGAACCTTTCAGAGGGAACACCCTATGCCACAATCTACTCCCATTTAAAGTAAGCTTACACAACTTGGGATGTCTCTACACAGGACCCTCACACACTGAAGGATTATGTTCTATGATGTTCCCTGTTCAACAGTTCACTTTCATCAATGACTTCTCAATTTCTGTTATgtactgcacattttaaaatagattgtAGTTCAAAATCAGGTGTTAACAGTTTGTACTGTTTGTTAtgatgaagaaaacaaaagtacaatttTGCCATGCAATAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012987 False 1533 mRNA 0.46 5 15782364 15790169
TU51492 False 1227 lncRNA 0.45 4 15782426 15790144
TU51493 True 2620 lncRNA 0.38 3 15782426 15791627
TU51494 False 1446 lncRNA 0.46 5 15782426 15790144
TU51495 False 1137 lncRNA 0.45 3 15782426 15790144

Neighbor

gene id symbol gene type direction distance location
AMCG00012986 NA coding upstream 67284 15705598 ~ 15715080 (+)
AMCG00012983 NA coding upstream 142626 15631426 ~ 15639738 (+)
AMCG00012980 NA coding upstream 163920 15616257 ~ 15618444 (+)
AMCG00012974 NA coding upstream 228312 15545635 ~ 15554052 (+)
AMCG00012972 NA coding upstream 250755 15526034 ~ 15531609 (+)
AMCG00012988 sap30bp,LOC107725325 coding downstream 52226 15843853 ~ 15859012 (+)
AMCG00012991 NA coding downstream 79465 15871092 ~ 15912709 (+)
AMCG00012990 NA coding downstream 136687 15928314 ~ 15950132 (+)
AMCG00012993 NA coding downstream 165194 15956821 ~ 15957000 (+)
AMCG00012992 NA coding downstream 166204 15957831 ~ 15971238 (+)
G41303 NA non-coding upstream 59498 15719507 ~ 15722866 (+)
G41282 si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652 non-coding upstream 223059 15556146 ~ 15559305 (+)
G41265 NA non-coding upstream 299043 15480691 ~ 15483321 (+)
G41230 NA non-coding upstream 494548 15285341 ~ 15287816 (+)
G41225 NA non-coding upstream 497076 15237287 ~ 15285288 (+)
G41325 NA non-coding downstream 67437 15859064 ~ 15859370 (+)
G41469 NA non-coding downstream 281887 16073514 ~ 16074099 (+)
G41484 NA non-coding downstream 329816 16121443 ~ 16124871 (+)
G41517 NA non-coding downstream 541663 16333290 ~ 16333574 (+)
G41536 NA non-coding downstream 791775 16583402 ~ 16583699 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 151361 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 208896 15570906 ~ 15573468 (+)
AMCG00012973 NA other upstream 212421 15566493 ~ 15569943 (+)
AMCG00012961 NA other upstream 465020 15297962 ~ 15317344 (+)
AMCG00012954 NA other upstream 645635 15081419 ~ 15136729 (+)
AMCG00013015 NA other downstream 927728 16719355 ~ 16729533 (+)
AMCG00013047 NA other downstream 2367215 18158842 ~ 18230238 (+)
AMCG00013068 NA other downstream 3175802 18967429 ~ 18974362 (+)
G41978 NA other downstream 3233934 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 5478048 21269675 ~ 21278728 (+)

Expression


Co-expression Network