AMCG00012996 (LOC107567801,LOC107578800,LOC107549326)



Basic Information


Item Value
gene id AMCG00012996
gene name LOC107567801,LOC107578800,LOC107549326
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16008943 ~ 16014310 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>AMCG00012996
ATCCTGATGACATATGACAACGTGGAGCTGTCATTCACTGATGCAGAGACTCTGCCAGAAGCTTTCAGGAAAAGTAAGAAAGGCAGTGTCTACATGACTCCTTTCAGGGTCATCTTCCTGACCAAAGGCAAGGACTCCATGACGTCTTTCATGATGCCCTTCTACCTGATGAAAGGCTGTGAGGTGAAGCAGCCAGTCCTTGGGGCCAACTACATCAAGGGAACTGTGACTGCTGAAGCCGGAGGGGGCTGGGAAGGTGTTGCAAACTTCAAACTTGTGTTTAATTCTGGAGGCGCAATTGAGTTTGGGCAGTACATGCTCCAGGTGGCATCACAAGCTTCCAGAGGGCAGCCCGTGATTGGTGCTTATGGGTGCCCCTATATGGCCAATGGAGCCTTTGCCTACCAGCCCCCCCCTGCCAACGGGATGTATGGTGGACCTCCACCAGGCTATACCTACCCACCTCCACCAGCACCAGCTGGGTTTTATCCTGGTCCTCCTAATTTTGACAATGCTGCAGCTTACATGCCACCCCCTCCCTATTCCGAACCAATGGACCAACCTTCTCTGGACCCAAGCCTGCCTAACACTACAGCAGGTAGCAGGAAGAACAATGTCCATTGTGGAAATggggCACAAGCTAAAGCAGCAGAGGCAGCAGCGAGCGGGACCTACTCCTCTCCTGGGCCCCACGTCTACATGCCCCAGGACAAGCCTCCTCCCTACTCCCCACCAGAGGACAAGAAATCCCAGTAG

Function


NR:

description
PREDICTED: WW domain-binding protein 2-like

GO: NA

KEGG:

id description
K22524 WBP2; WW domain-binding protein 2

RNA


RNA id representative length rna type GC content exon number start site end site
AMCG00012996 True 756 mRNA 0.54 7 16008943 16014310

Neighbor


gene id symbol gene type direction distance location
AMCG00012992 NA coding upstream 37705 15957831 ~ 15971238 (+)
AMCG00012993 NA coding upstream 51943 15956821 ~ 15957000 (+)
AMCG00012990 NA coding upstream 58811 15928314 ~ 15950132 (+)
AMCG00012991 NA coding upstream 96234 15871092 ~ 15912709 (+)
AMCG00012988 sap30bp,LOC107725325 coding upstream 149931 15843853 ~ 15859012 (+)
AMCG00013000 NA coding downstream 8412 16022722 ~ 16028826 (+)
AMCG00013005 NA coding downstream 123689 16137999 ~ 16145425 (+)
AMCG00013006 NA coding downstream 141369 16155679 ~ 16183420 (+)
AMCG00013009 NA coding downstream 421754 16436064 ~ 16437861 (+)
AMCG00013017 NA coding downstream 628606 16642916 ~ 16677331 (+)
G41325 NA non-coding upstream 149573 15859064 ~ 15859370 (+)
G41303 NA non-coding upstream 286077 15719507 ~ 15722866 (+)
G41282 si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652 non-coding upstream 449638 15556146 ~ 15559305 (+)
G41265 NA non-coding upstream 525622 15480691 ~ 15483321 (+)
G41230 NA non-coding upstream 721127 15285341 ~ 15287816 (+)
G41469 NA non-coding downstream 59204 16073514 ~ 16074099 (+)
G41484 NA non-coding downstream 107133 16121443 ~ 16124871 (+)
G41517 NA non-coding downstream 318980 16333290 ~ 16333574 (+)
G41536 NA non-coding downstream 569092 16583402 ~ 16583699 (+)
G41537 NA non-coding downstream 609110 16623420 ~ 16623650 (+)
G41264 hbp1,LOC108230206,LOC107701066 other upstream 190601 15477179 ~ 15818342 (+)
AMCG00012987 NA other upstream 217316 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 377940 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 435475 15570906 ~ 15573468 (+)
AMCG00012973 NA other upstream 439000 15566493 ~ 15569943 (+)
AMCG00013015 NA other downstream 705045 16719355 ~ 16729533 (+)
AMCG00013047 NA other downstream 2144532 18158842 ~ 18230238 (+)
AMCG00013068 NA other downstream 2953119 18967429 ~ 18974362 (+)
G41978 NA other downstream 3011251 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 5255365 21269675 ~ 21278728 (+)

Expression



Co-expression Network