AMCG00012998


Basic Information

Item Value
gene id AMCG00012998
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16037883 ~ 16074028 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00012998
TTTGTTTTAAACCGTGTTGTCGTAGGGAAGGAATGGGCAGCTGACAGCACAGATGCGATTAGTGTGCACATGAAGTTTATCCCGTGGTTTCTAGTATTAGGTTATATATGgattttaacattattacatttctaaatcCAGATTCATTTTATtagaaattatgtattattattatttattattatttattattctgtggACTCAGACTAGATCAACTGCATTAACGACTGCATCACCGTTGTCCATTCAAGCTGAGTCTATGTGCTGTAGCCTGTGCgaatataaatgcattcattaatttgtatctAATGTTGGACACAAAATATAtggatttgtttcttcttcctcgtattaaaaagtcaaatgttaTATGGATTAAAGTACCCATACATGTTCTGAGACAAACTATTTTAAGTGAGTCTGCATACGATAACGTGTCAGGACCTCTGTGTGAACTAATGCACTTCCGAAGTCCAAAGGTCTGTATAGTGGGCAGTGGACCTGCAGGTTTCTATACTGCACAGCACCTGCTTAAGAATCACCCAAGCCTTCAAGTGGATATCTACGAGAAGCTGCCTGTGCCGTTTGGTCTTGTTCGGTTTGGAGTAGCACCCGATCACCCTGAAAACGTGATCAACACTTTCACACAGACTGCCCACCAGGAACGGTGCAGTTTCTATGGGAACGTCAGCGTGGGCTGTGATGTCACCGTGGAGGAGCTGCAGCGAGCCTATCACGCTGTCGTACTGAGCTATGGAGCAGAAGGAAATAGGAGATTGGGTATCCCTGGAGAAGACTTGAGTGGGGTGTACTCTGCTAAGGATTTTGTAGGCTGGTATAATGGGCTGCCCAGCAATAAAAAGTTGAAGCCGGACCTGAGCAGTGAGACGGCTGTTATTTTGGGACAGGGAAACGTAGCTTTGGATGTGGCCAGAATATTGCTTTCTCCCTTGGACCTCCTCAAGAAAACGGACATTACAGAGGAGTCCCTGGAAGCCATTGCAGCCAGCCAGGTCCGCAGAGTGCTGATTGTGGGTAGAAGAGGACCCCTGCAAGTAGCCTGCACCATCAAGGAACTCCGAGAGATGATTAACCTTCCAGACACCAAACTTCTGCTCGATCCCACTGACTTCAAAGGACTAAAAGATGTGTTGAAAGATCTCCCCCGTCCCAGGAAGAGACTCACTGAGCTGATGTTGAAGGCCCTGGAGAAGCCTGTAGGGAAAGACATGGAGGGGGCTGCCCTTCGCTGTTGGGGGTTAAAATTCCTACGCAGCCCCCTGGAGATCCTACCCAGCCCTGATGGCACAAAAGCATCTGGCATCCGGCTGGCACTCAACAGGCTAGAGATATCTGGGGAGGAAGCCAGGGCTGTACCTACTGGGGAGCACGAGGATGTGGACTGTGGTCTGATTGTCAGCAGCATCGGATACCAGAGTCTGCCCATTGACCCTGCCGTGCCCTTTGACCTTAAACAGGCAGTAATACCCAACACCCTTGGCAGAGTGGAACAGGTGTCTGGTCTGTACTGTAGTGGCTGGGTGAAGAGAGGTCCCACAGGCGTGATTGCCACCACAATGAATGACAGCTTCGACACGGCTCGCTCTGTGCTGCAGGATGTGGAGTCTGGGCACCTGGACTTCAGCAGCCCCAAGCTAGGCTCTGAAGCCACGAGAGCTCTGATGGAAAAACGAGGAGTGGTTCCAGTGTCGTTCTCTGACTGGGAGAAGATAGACAGTGCAGAGGTACGGAAGGGACAGGAGGTCGGCAAGCCCAGAGAGAAACTGCTGGATATTGGGGAGATGCTGACCTTGGCCAGGGCCTGAAGGAGCTCCAACCTTACTGCTAATAGCATAGTCGGAACTGGGCTGAGGGACTTTGCCTCCACTTGAAAGCACTCATGTTATCAAGACTACAAAGCACATTCCTCTGAGGAATCTGGATGGTTATTCCTCATGTTTTCCATTCCCTTAAACCAATAACGCTTATGTCCTGAGGTATCTTCTCAGCCAACACTCTTCACAAAACCACCgcattattttgaatgcagaATTTCTCATGGTGTTGAAGGTAGTCTGTTTCCCTCTCATACCAGGGTTATGATCTGCCCTTActtttagttaattaaaaacaattcaaaggTGTTCATTGAAGATGAAAATGACATTGTGAGTGTCTGAAACATTGTGATGATGCTTTCTGAGTCTATAAAGAGAAACTGTTTTAGTTTGTAAGA

Function

GO:

id name namespace
GO:0008203 cholesterol metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005759 mitochondrial matrix cellular_component
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K18914 FDXR; adrenodoxin-NADP+ reductase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00012998 True 2236 mRNA 0.47 12 16037883 16074028

Neighbor

gene id symbol gene type direction distance location
AMCG00012997 NA coding downstream 16136 16018730 ~ 16021747 (-)
AMCG00012999 NA coding downstream 38001 15971132 ~ 15999882 (-)
AMCG00012994 h3f3b,LOC106912265,LOC107377396,LOC106963510 coding downstream 82644 15950836 ~ 15955239 (-)
AMCG00012995 NA coding downstream 113479 15914228 ~ 15924404 (-)
AMCG00012989 NA coding downstream 229198 15803957 ~ 15808685 (-)
AMCG00013002 NA coding upstream 7233 16081261 ~ 16085241 (-)
AMCG00013004 NA coding upstream 26288 16100316 ~ 16104419 (-)
AMCG00013001 NA coding upstream 34587 16108615 ~ 16128233 (-)
AMCG00013003 NA coding upstream 72215 16146243 ~ 16154855 (-)
AMCG00013007 LOC108274136,LOC107754112,LOC107743783,LOC107691214,LOC107566616,LOC107568947 coding upstream 176109 16250137 ~ 16251210 (-)
G41460 NA non-coding downstream 1947 16035647 ~ 16035936 (-)
G41455 NA non-coding downstream 21862 16014136 ~ 16016021 (-)
G41454 NA non-coding downstream 26519 16011012 ~ 16011364 (-)
G41453 NA non-coding downstream 27641 16009836 ~ 16010242 (-)
G41452 NA non-coding downstream 28489 16008942 ~ 16009394 (-)
G41506 NA non-coding upstream 95281 16169309 ~ 16208177 (-)
G41510 NA non-coding upstream 143353 16217381 ~ 16217595 (-)
G41518 NA non-coding upstream 259203 16333231 ~ 16333595 (-)
G41538 NA non-coding upstream 549391 16623419 ~ 16623773 (-)
G41612 NA non-coding upstream 1072687 17146715 ~ 17146981 (-)
AMCG00012985 NA other downstream 315426 15719513 ~ 15722457 (-)
AMCG00012931 snrpf other downstream 1693411 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 2922396 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 3131550 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 3766094 12240396 ~ 12271789 (-)
AMCG00013018 NA other upstream 556203 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 1806197 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 1855870 17929898 ~ 18046714 (-)
G41807 NA other upstream 2102033 18176061 ~ 18191522 (-)
G41836 NA other upstream 2168722 18242750 ~ 18244093 (-)

Expression


Co-expression Network