AMCG00013000


Basic Information

Item Value
gene id AMCG00013000
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16022722 ~ 16028826 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013000
GCTCTACGTAGTTGATGGGAAAAGTGAGGCTGAGTGTGTACTACGTCAGAGAGAAGATGGCGGCGCGCATGGTGTGGGGTGCTGTTGTAAGGACAGGTGTGGATTTGAGGCTCAGTCGGGCACTCGGAACCTCAGCTGCTGTGTGCCGACGGGCAGCCCCACTGGGACCGATGCCCAATGAGGATATTGATGTCACAGACCTGGACTCCTTGAAGAAGTACCGCAGCTGGACACGCTACATGAAGTTTGCAGAAGAGGCCAGCGGGAAGCCACAGTGGTGGAAAACGTACAGACAGCATGTCATCCAGGACGATGGTGCGGAGAAGATTGACATCGGCCTTCCTCAATTTCAACTTCCCCGAAGCCAGCAGCTGAGGAAGAGGAAGCGAGTGCTCAGAGAGAACCACAGGGACAGTGAACTGGAAAGAGAATCACGCCTGTACCGCTTGCGGATCCCGCTGGATGAGGTGaaggcagactgggagaggataAATGGGCCCTATCACTGTCAGAGGGTGGCCGAGCACTATGGCATCTACAGGGACCTCTTTCCAGGAGCCACCTTTGTGCCGAGGGTGGTGCTGCGTGTGTTGTACAGCCCAGATGGGAAGAGCAGTGCCCAGGTGCACTGTGGGAATGAGCTGACCCCCACTGAGGCCGGCAGCCCCCCGGAGGTGAAGTTCAGTGCAGAGGAGGGCTCTCTGTGGACCCTGCTGCTCACGAGTCCAGATGAACATCTCAGAGACAACGAGTCAGAATATGTTCATTGGCTAGTTGGAAACATTCCAGGTAATGCTGTGCAATCTGGCGAGGAGGTCTGCCACTATCTCCCCCCCTTCCCTGCCAAAGGCACAGGATTCCACAGGTTCATATTCGTTTTGTTCAAGCAGGACGGCCCAGTCAATTTCAAGGACGATTACAGGCCCTCTCCGTGTCACAGTCTCACAATGAGGACGTTCAGGACTGTGGATTTCTACAGGACACACCAGGATGCAATTACCCCTGCTGGACTCGCCTTCTTCCAGGCCCAGTGGGACATGTCTGTCACTCACACGTTCCACGAGCTACTGAatatGAAAGAGCCCATTTTTGAATTCGACAGACCGCCTGTTTACCACCCGCCCCAGAAGAAATACCCTCATGCTCAGCCTCTCAGATACCTGGAAAGATATAGAGAAAACCACAAGCCCACCTATGGCATCTACTGACAGTCCAGAGTGAATGGTTAGGACCTGCATTGCAGTTGTACAGTATTAAACTCCCCTAATTATCATTActtttcgttttttgttttttgtaataaaatcacaTCTGGAACAAACTTGGATTTCCATCCTATTCCA

Function

GO: NA

KEGG:

id description
K17419 MRPL38; large subunit ribosomal protein L38

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013000 True 1343 mRNA 0.53 9 16022722 16028826

Neighbor

gene id symbol gene type direction distance location
AMCG00012996 LOC107567801,LOC107578800,LOC107549326 coding upstream 8412 16008943 ~ 16014310 (+)
AMCG00012992 NA coding upstream 51484 15957831 ~ 15971238 (+)
AMCG00012993 NA coding upstream 65722 15956821 ~ 15957000 (+)
AMCG00012990 NA coding upstream 72590 15928314 ~ 15950132 (+)
AMCG00012991 NA coding upstream 110013 15871092 ~ 15912709 (+)
AMCG00013005 NA coding downstream 109173 16137999 ~ 16145425 (+)
AMCG00013006 NA coding downstream 126853 16155679 ~ 16183420 (+)
AMCG00013009 NA coding downstream 407238 16436064 ~ 16437861 (+)
AMCG00013017 NA coding downstream 614090 16642916 ~ 16677331 (+)
AMCG00013010 NA coding downstream 679446 16708272 ~ 16710011 (+)
G41325 NA non-coding upstream 163352 15859064 ~ 15859370 (+)
G41303 NA non-coding upstream 299856 15719507 ~ 15722866 (+)
G41282 si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652 non-coding upstream 463417 15556146 ~ 15559305 (+)
G41265 NA non-coding upstream 539401 15480691 ~ 15483321 (+)
G41230 NA non-coding upstream 734906 15285341 ~ 15287816 (+)
G41469 NA non-coding downstream 44688 16073514 ~ 16074099 (+)
G41484 NA non-coding downstream 92617 16121443 ~ 16124871 (+)
G41517 NA non-coding downstream 304464 16333290 ~ 16333574 (+)
G41536 NA non-coding downstream 554576 16583402 ~ 16583699 (+)
G41537 NA non-coding downstream 594594 16623420 ~ 16623650 (+)
G41264 hbp1,LOC108230206,LOC107701066 other upstream 204380 15477179 ~ 15818342 (+)
AMCG00012987 NA other upstream 231095 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 391719 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 449254 15570906 ~ 15573468 (+)
AMCG00012973 NA other upstream 452779 15566493 ~ 15569943 (+)
AMCG00013015 NA other downstream 690529 16719355 ~ 16729533 (+)
AMCG00013047 NA other downstream 2130016 18158842 ~ 18230238 (+)
AMCG00013068 NA other downstream 2938603 18967429 ~ 18974362 (+)
G41978 NA other downstream 2996735 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 5240849 21269675 ~ 21278728 (+)

Expression


Co-expression Network