AMCG00013001


Basic Information

Item Value
gene id AMCG00013001
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16108615 ~ 16128233 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013001
ATGTCCACCAAGCGCAGCAGCACAGTGTCACGACTGAGCGAGTTCCATAAGCtggtgggagagagagtgtaCCTTAGCGACTGCCTGGCGTGTGACCGGTGCGTCACCGAAGAGGAGAGCCAGAGGATATCCCAGCAAAACCTTCAGCAGCTCTCTCAGATTCTTAGCCTTAACAAGAAATGCGATACCTCAAAACACAAAGTGCTGGCAGTTTCTCTGTGCCCCCAGTCTCTGCCTTTCTTTGCTGCCAGATTTAACCTCAGCATACCAGAGGCCACCAAAAAACTCTGTGGCTTCCTAAAAACTATAGGGGTGCACCATGTGTTTGATGCCACACTGGCTGCTGACTTCAGCCTCCTGGAGAGCCAGAGGGAATTTGTCCAGCGGCACCGGCGGAGGAACCAGGACCAGCATGCCCTGCCCATGTTCACCTCTGCCTGCCCAGGATGGATTCGGTATGCAGAGCGCGTCCTGGGCAGCCTGGTGACTCCTCACATCTGCACTGCCAAATCCCCCCAGCAGATCATGGGCACGCTGGTCAAGGACTACTTCACTAAACAGCAGAAGCTCTCCCCTGATAAACTGTACCATGTGGTGGTGGCTCCATGCTTTGATAAGAAGCTGGAGGCCCTGCGGGAGGAGTTCTATAACAGCCTGCTGGACAGCCAAGATGTGGATTGTGTTCTCACCTCAGgGGAAATCATACACATGAtggaagaacaaaacatttcagtagaAAGCTTAGACTCGGTCCATTTGGATTATGTTTTCGGTGAGTCTGAAGAGACTGATATTGTTCGCCATGAAGGGAGGGGAGCAGAAGGCTTTctggaacacattttcaaatatgcTGCCAAAGAGCTGTTTGGATTGGAGGTGAAGGAAATTGTTTACAAGACACTGAAGAACCGTGATTTCCAGGAAGTGATCCTGGAGAAGGACGGGGAGACGCTGTTACAGTTTGCCGCGGTTTATGGCTTTAGGAACATTCAGAACATGATCCAGAAGCTCAAGAAAGGGAAGTTCCCATACCAACTGGTGGAAGTGCTCTCCTGCCCTGGAGGCTGCCTAAACGGGAAGGGCCAGGCGCAGACTGACAGTGGGAAGCCAGACAGGGCGCTGCTGCAGCAGATGGAGGAGGTTTACACCAGCCTGCCTGTGCGGCTGCCTGAGACCAACCCCCAGCTGCAGCAGCTCTACCAGGACTGGCTGGACGGAGCTGAGTCTCCCCGGGCGCAACAGGCCCTGCACACACAGTACCGGCCCGAGAGCCAGGCGTCCAGCACACCCGACTACAAGTGGTAGCCCGAACCCTCTGAATCTTGGACTTCCAGAACAAAGTGGTGCAACTTCTTCgtccaaaaatgtttttctttttaaattccgATATCAGCCACTGCAGCCCTGAGCTGAGCGAGGAGAAACCTGAGCACACCTTGGTACTTCCATTCTGTTCTGTTGTGGGACTTTGAGACAGCCGCTGCTGTATTGACATCATTATCTCTGGACTACTCCATTGGCCCTGCAGCTTATAATGGCTTTAATACTTCAGTAGTAATGGGAACAATATCCTGCACTGATCTAGAGTGATGAGGGAAATTTAACCAAGGAGACCGATCTAGTGAATTGAAAGGGACTTTTTAAAGAGCACTATTAATTGTTCATATAGGTTTTCTTAGATATGGTATAAATAGCCAGAAAGCTAGCTACacataattaaactgaatgGTGCTATATATTTCAATCCAATGTCTTttatcaaattatttcaaaccaacaacaaaaactgctgAGTTCTGTATGGGCATTTCTGTTTGTGTAAGCTAACTGACCCAGTTAAATCCTGTTTGTCATTGATTTAGACTGACAGGAGCTGGGACAAGGAAGAAAAGTGGCTTGTTCTTAAATATTACTGcaattttggttttgttttggtgattTTCAAATTTGACAGCCCCTCAGTGGAATAGGACTAAAGTGCCAAGGTTGCCTATCTCGGCTGTATGACCCATGTGTGTCGGGTTGATTACAGAACCAGACAAATGGCCAATGGAAGACAGGCTGAAGGATTTACAATTTTCCCGAAGTGGCTCCTTTTTCTGTAGTTGTATTATGATAGTAAGTAGTTTTTAATATCTCcattataaatcatgttttcattaaCCCCCCTCttccaaaacaattaaaaagatgtGAAGTGCAGTGCATCGCCTTTAATACATATAGGTGatttttaaaggatttaattTACTGCAACTTAAATGTGATGGCACTGATTTTTAAAGTGTCTTCCTCAGGGCCTGTCCTCTTCAGCTAACAGTGTTCAGTTACTACTGGCTGGGtcttacagtatttatttagaataccatatattttacaaagttttgttgtttttcttcaagaTCTTCGGCAAGGTGCGTTGTATAAGTTTTCCCAACAAgcacaagctttttttttttttttttttttttattctcaggACAGACAATCCCACAGAATGTGCTGTAATCTAGGCTCAAATCTATCTCCACTAAGTCTTCAAGCAAGCAGCTGTGTCGCATGTCAGCATGCAGGGAGGAAGCACATAATGCAACATATTAGTCGGTACTGTACAAGGAAAATTTTAAATCCATGCATCAACAATATAGAGATTAAACTGGACATGAATAATATTTATCAAGCCAGCAAAGGTCCATTGACTATAGCTTATAACACTTAGTCTTTCATCCTGAAACATTGTAGCAATACTGAAATGTCACTTCATTGTCTTGTGTTATGGTATATGCTAATTTATGAATGGACTGATGGCTTGAAACGTTGATTAATTACAGATTATGATTTAGAATCGAGTACATTAAAGTTACAACATTATATTTGGggttaatattgatttataagTCTTTGGTAAATGTAATtcaggatttaatttaatttcccataGCCACACCATTTAGATTCTCATGATTGCCTTTTTAAATAGGGGCAACatgcacattgtttttgttccagttttGAACATTAAATCTATGGAGCACTGCCTTCCAAATCggagagaaaatgtaaatttttgGTTAAAAAACATTGCAGTCCTCACCCTTATCATATGATTACATATTTCCCCTGGTTAGTTTCCCGAAGAAGGTAAAGGGATAGAATACATTGTGACTGTAACACAAATTCAAAAAAGGGTTTATATCTCAATGGGATAATTACTTTCAACTTACGTGAAGCAGACAGCATTTTCATTTGGGTAGTAATATAGATTATTATGTATGAAATGCATGGTATGACTTAAGCAAGCATTTCTTCTTATTCATTATTGTACTACTGATAGACCTTCATCTTTGGTTTTCTGATAAGGAAGCATTTGACATCCTAGTGATCATTCAAGCAGAAcgaattaagaaaaataaatgctgtggtGAATAAAGCTTCtgtgaaatgtttcaaaatagTGTTGGAGAAGAACTATTGAGCTTCTTACCTCTAACGAAAGGCACAGACCTTAATTTACAGGACTGACTAACTTGTCGATGATCTTGGTGCCGAGTGCAGAACTCGACTGGAATCATTTCCTAACAAAACAGGAACACAATTCTCATCCTCTAGGGATAAGTTACTGCAGGTAAACTGGTTCAGAAATTAATGGGTGGGACTTGGATTGAATGGAAATGTGAAAACCTTCCTTTTTTGAGGACTGGAGTTGTGCAGCAAAGATCTTGGCCATTGTTGGTATGAATGGTCTCTGGGATAGGCCAGCTTGGCAGATCCAGTGCATTGCAATACTGTGATCATGGTAGGTTTTACTGAATTAAGTGCTCTCCCTTTCATCTGTTTTACTCTACTTTCTCTGCTTCTACACTTTTACTGTGGCTGAGTATTGTTTTCTATTACAGCCAGCGGAACATTCTAGACCTTCTATAGCTGTAGCTCCTTCTACCATGGGAGCCGTGATGGTAGTCATCTTGGGAGGAGAGCTTGGACCTGCTTAGGGTGTTTATATCAGAACTCTCTGTGTAGATTGAGCCTCCCTTGCCCTGTCTCTCTACTAACCTTACATGGGATGGAGTGTGAGGGGTCTTCTGGGGCTGTTCCTGTGATTCCTTTACCTGAGTGGGCCCTTAATACATCAGTTCACCAAAGATCTTGTTAAAATATCTTCCACTCTAGTAAGTAAGTAAGTCTCCAGCTTAATGAAAATGTGCTGTCAGGACAAAGCCAAAACCTTTGGTTGTTGAGTGAAATAGAGGAGGGCTCAGGTGAAATGAAACCTGAAGAGAATTAGGCCTGTTGTCTCCTGCTGTGGCACTGATATGGGGCAGGATTATGGTTCTCCCGATATTGAAAAGAGATCTTGGTTCATTCCTTTATGCAACTATGTTGTGTGGCAAACAGCCGTATAGAAACAATCCTGAGCCAGTTGACTGTTTCTCAGTTATCGATGGCTGCCATTACACTTTCACACATACACCAAATACACAAAAGGTCGGAACATCTCTTGGGCTGAAGAGCTGTTGGAATGTGATTTTCAGAGCCACAGAAATGGAAGTGGAGGAAAGGACAATCGGCATTCTTTCCATGAGGAGTTTTAGTATTCCTGGTATTGCTGCCTCTCATTTTGGAGAGGATCTTAATTTCACACCCTCCTGTCATGAGCTTAATTTGAGGATAGGTTAATACCCAGGTATAtgcacaataatacaaatgcaatattgTGGAAAAGGCCTGCCTTCTCTGGTAATGGATTGTACCAGAAGTCATGTGATATCCAGAGAATGTTTTTTGAAGGACACCTTGACAGCCAAaatcttgtttgtgtttttggaaaacaatgtattgcCTGCTCACCTACTAACAAGATAACACACAATTTCCAATAAAGCCTGGTGTAACCCAATTGTTCAAAGTCAAGAACCGCAAgatattgtaaattataatgtataaagGTTGAGTGATGGATTGGCCATAGCTTGTAAAATGTCCATTGAATTTTGGTGCTTCACATCTTGCCTATACAATGGTggactttaaataaatatattagaaGATCTTCAGAATGTGTACGACTGGAAATATTGTGTGGAATCACAAGGGTTACAATTTTAGCTAATCTCCAACTCCAATTTAATTAGGATGCAGATTTGAAAAAGTATAAAAGGAGATACAAGGGTTAGTTGCTGCATATTCAATCTAAAGTCATTGTAgtgtcattttcattaaatgcagTACATACAG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013001 True 5235 mRNA 0.42 10 16108615 16128233

Neighbor

gene id symbol gene type direction distance location
AMCG00013004 NA coding downstream 4196 16100316 ~ 16104419 (-)
AMCG00013002 NA coding downstream 23374 16081261 ~ 16085241 (-)
AMCG00012998 NA coding downstream 34587 16037883 ~ 16074028 (-)
AMCG00012997 NA coding downstream 86868 16018730 ~ 16021747 (-)
AMCG00012999 NA coding downstream 108733 15971132 ~ 15999882 (-)
AMCG00013003 NA coding upstream 18010 16146243 ~ 16154855 (-)
AMCG00013007 LOC108274136,LOC107754112,LOC107743783,LOC107691214,LOC107566616,LOC107568947 coding upstream 121904 16250137 ~ 16251210 (-)
AMCG00013008 LOC101481179,LOC102780800,LOC107388280,LOC103369862,LOC107743796,LOC107577513,LOC107691210 coding upstream 404517 16532750 ~ 16533847 (-)
AMCG00013012 NA coding upstream 549927 16678160 ~ 16687304 (-)
AMCG00013011 NA coding upstream 588283 16716516 ~ 16718657 (-)
G41460 NA non-coding downstream 72679 16035647 ~ 16035936 (-)
G41455 NA non-coding downstream 92594 16014136 ~ 16016021 (-)
G41454 NA non-coding downstream 97251 16011012 ~ 16011364 (-)
G41453 NA non-coding downstream 98373 16009836 ~ 16010242 (-)
G41452 NA non-coding downstream 99221 16008942 ~ 16009394 (-)
G41506 NA non-coding upstream 41076 16169309 ~ 16208177 (-)
G41510 NA non-coding upstream 89148 16217381 ~ 16217595 (-)
G41518 NA non-coding upstream 204998 16333231 ~ 16333595 (-)
G41538 NA non-coding upstream 495186 16623419 ~ 16623773 (-)
G41612 NA non-coding upstream 1018482 17146715 ~ 17146981 (-)
AMCG00012985 NA other downstream 386158 15719513 ~ 15722457 (-)
AMCG00012931 snrpf other downstream 1764143 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 2993128 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 3202282 12896520 ~ 12906333 (-)
AMCG00012888 mkln1,LOC107104017 other downstream 3836826 12240396 ~ 12271789 (-)
AMCG00013018 NA other upstream 501998 16630231 ~ 16639087 (-)
AMCG00013038 NA other upstream 1751992 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 1801665 17929898 ~ 18046714 (-)
G41807 NA other upstream 2047828 18176061 ~ 18191522 (-)
G41836 NA other upstream 2114517 18242750 ~ 18244093 (-)

Expression


Co-expression Network