AMCG00013005


Basic Information

Item Value
gene id AMCG00013005
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16137999 ~ 16145425 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013005
GCAGAAGCGGCCTCGTTTACACAGCTCCGTCTCCAACTTCCCCATTCATAAAAAAACTACTATCATTGGTATACAGGACGGCGTAATCTCTAACGTGTTGGTGCAAGTTACAATCCTCATCCCGCGAAAAGATGGGGTATATGACAGTGGAGCTGCACACACCGAGTCTTCTCCACCTGAAGAGGCTGCCTGGCATTCGCTCTTGGTCTTTACTTGTTGGAATAGCCTCAGTAGGGCTGGCAGCAGCTTACTACAGCTCGgATAGCTGGCTGTGGAAGCTGTTCTATGTGACTGGTTGCTGCTTCGTGGCTATACAGAACCTGGAGGATTGGGAGGAAGCCATTTTTGACAAGTCCAAGGGTCAGGTCTTGCTGAAGTCCTTTAACCTCTACACCAAGATCCTGACTCTGTGGAGGAAGGGCCACGAACAAGTGGTGGCCGAACTCAGACACATTCAAGATGTCAGTGTGGAAGAGGAGAAGGTGCGCTACCTGGGGAAGGGGTACCTGGTGGTATTGCGTTTTGCGACAGGCTTCTCCCACCCCCTGACCCAGAGTGCCACTTTAGGTGGGCGCAGCGATGCTGATGTTGTGGCCGGGCTCCTGAAGCGCTTCCTGGGTCTGGACAAGCAGCGGCCATGGGAGGAAGAGGTGGAAAGCAGTGACAGTGAGAGGGATGAAccagaagaagaggaggaggaggaacacTGATCGACAGGCGTCTGAGCCCTCCAGCTCAGCTCTGAACATGGTACCCTACCCTTGGCCCACACTACTAGTGGGCACCTGCTCAAGAAGCGCCACCATTTGGTACgtcaaactgaacaaaaactGACGCTGTGGCCTCTATTTTCTCAACACTGCCAGGGATCGATTCCTACAGAAGGCTGTAGTGTATGGGACTAAATGAAGTATACTGCcgatttgtatttttctccctattgtttttaattgcttatgCTCAAATCTAGGAAAATAagggattgttttgttttttatatttaaatgcttttaaaactcTACAAAatgatgttttgtaaatatctcTGAATGTGGAAGGAAGCTACACTATCCCTAAGGTTCAGTACAgtgtaaatctgttttatttttcagaacacCATTAATGTTGTTTATATGATTTCAGCTTGTGCAAGACCTCCCAAGTATGATCCTTCCCTGTAATTTTCCAAGTGAAGTGTACAGAATGCAGGGGGCTTAGGACTGCCGAGTCTTGTCTTCCACTTTAAGTGGGAGTGAATGAAGCACTGTCATTGTCAGGGAATGCGTCTCTGTTCTGTGTAACAGGCACACAGTgcgtttgtttgtgtttctggaCTTTAGTCTACCAAGTGTGAAAGCCACTACATTTTATACGCTTTAGTCAGAACTCTTTCAATTGAAACTGTAAGGTCAAGGAACATCTTAAAAATTGTACACAATCtatgaataaaaaaattgatgatttcagaaatgtttaacCTGCTTTGAAGAACAGGACCTAAATCTAAATGGCAGGAAGTCGTGCTAGATGATTTCTGTGCATTTGGTTTCAAACTGGCTCCAGCCCGAGACAGACCTAAGTGTTTGAAGACGCCACTAAATCGTTAACACTCTGACAGTAATAATATGCAAGCAATATCTACACCATTGCTCAACTGACACAATTTAGAGAAGTGCTGCTTTTTGTGGTTGCTTGTACCATAAGCAGTGGTTATTAAAGAATTAAAGTGATTGCTCTCCCTTACTATTATTATccttttgttattgatttagCAGCAGTTTCAAACACAAGGTCTGTTCCAGGGTGGAGCTGTGTTACAAACTACAGATTTCCAGCAGGAGTATAGGTTTGGTTTGATAATCCTTTTGGATGGCAGAGAGATGCAAATAACTGAAACTGTAGGAAAGATAATGCTTGATATTTGTGCTTAACATAGGAGAAATTATGAGATGGCAGGTCTTGTGTCCAAAGACTCAATTCTATATTCCATTGAATAATATAAAAGCATGATTCTGTTAAGAGTCAAGATTCACATTAAGAAACAATGTTTGGTTAGTAAATTCCTGAATGAAACTGAATGCTTTAAATTCTGATCAGTGTAATCATTTCATACATTCAGAACCAGTGTTatcaattttttaaatctttaaatgtgtatgtattccTTCATTCTCCCTTGAAactgttaatgaattaaagGAGTAAAGAGGTCTCATTTGAATTTTACTTTATTAGTGCAATTCCTAATAATACTGATATGACTGTATGCTTATAGTGTACAAATGGAT

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013005 True 2288 mRNA 0.42 7 16137999 16145425

Neighbor

gene id symbol gene type direction distance location
AMCG00013000 NA coding upstream 109173 16022722 ~ 16028826 (+)
AMCG00012996 LOC107567801,LOC107578800,LOC107549326 coding upstream 123689 16008943 ~ 16014310 (+)
AMCG00012992 NA coding upstream 166761 15957831 ~ 15971238 (+)
AMCG00012993 NA coding upstream 180999 15956821 ~ 15957000 (+)
AMCG00012990 NA coding upstream 187867 15928314 ~ 15950132 (+)
AMCG00013006 NA coding downstream 10254 16155679 ~ 16183420 (+)
AMCG00013009 NA coding downstream 290639 16436064 ~ 16437861 (+)
AMCG00013017 NA coding downstream 497491 16642916 ~ 16677331 (+)
AMCG00013010 NA coding downstream 562847 16708272 ~ 16710011 (+)
AMCG00013016 NA coding downstream 601745 16747170 ~ 16757092 (+)
G41484 NA non-coding upstream 13128 16121443 ~ 16124871 (+)
G41469 NA non-coding upstream 63900 16073514 ~ 16074099 (+)
G41325 NA non-coding upstream 278629 15859064 ~ 15859370 (+)
G41303 NA non-coding upstream 415133 15719507 ~ 15722866 (+)
G41282 si:dkey-180p18.9,akr1b1,LOC107729832,LOC107690495,LOC107587162,LOC107725652 non-coding upstream 578694 15556146 ~ 15559305 (+)
G41517 NA non-coding downstream 187865 16333290 ~ 16333574 (+)
G41536 NA non-coding downstream 437977 16583402 ~ 16583699 (+)
G41537 NA non-coding downstream 477995 16623420 ~ 16623650 (+)
G41564 NA non-coding downstream 584642 16730067 ~ 16731293 (+)
G41565 NA non-coding downstream 587479 16732904 ~ 16733177 (+)
G41264 hbp1,LOC108230206,LOC107701066 other upstream 319657 15477179 ~ 15818342 (+)
AMCG00012987 NA other upstream 346372 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 506996 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 564531 15570906 ~ 15573468 (+)
AMCG00012973 NA other upstream 568056 15566493 ~ 15569943 (+)
AMCG00013015 NA other downstream 573930 16719355 ~ 16729533 (+)
AMCG00013047 NA other downstream 2013417 18158842 ~ 18230238 (+)
AMCG00013068 NA other downstream 2822004 18967429 ~ 18974362 (+)
G41978 NA other downstream 2880136 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 5124250 21269675 ~ 21278728 (+)

Expression


Co-expression Network