AMCG00013012


Basic Information

Item Value
gene id AMCG00013012
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16678160 ~ 16687304 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013012
TTCTCAGATGGGGCGTTTAATGGTGTGACAGCTCTGAAGTCTCTGcacattgaaaacaacaaactcAAGTTCCTGCCTCCCAGCCTAGAATTCACCACCATCCAGAACATGACACTGGCCAACAACTCTTGGATGTGCACTTGTCAGCTTGCCCCCCTGCGCAAGTGGATGGACTCCAGCAGGCTGCGTCCAGAAGCTACCTGTgaGACGCTGGGAAAGTCTGTCCAGGTGACTGGCTATTTGTGCAAAGAAAGGAGCAATGCCAACTGCTATTTCAACACTGTTCATCTCCTTTGCCCTGCTTCCCCCTCTTCTCTTCCCCACTGAAGAATTTCTCAAATAGTTACCAGTCTCCAAAAATTCCTTCTCCCCACATCAGCCTGCACTTGCCAGGTTGCCCTGTTTACTCTCTCTAGCATGTTATATAGCAATACATAAAAAGTCCCTTCTGAGGATGTAAAAGTTAGGTGCAAGGGGAATGACCTGTACCATCAAGTGAAGTGGGAATATGATATTTGATCTTTCTAGCGGTTTGTGTGTTAATTCCATGCAACAAGTTTTAACCATACTGCTAACACCCTAAAAGGGTGTAAAAAAACAAGCCTCAAAGTGGATCCAAACACCTTGTAATGTgatccttttgttttattttcatactaaATGTCAACAAAGCAGAGTCCCTCTTTGAGCCTTAgcatttacacatttcagtGTTTCCTAACCTCCTCCTCCTAACCTTTATTTAGGGTTGAAATTTTGGAATCTGAAACTTAGCACCAACCCCAATTTGGAAACATCTCGGCTCACCATAAGCTATCGTGGCACTAACATGGGACACATGTAGACAGACACGTGCTTATCTGCTTATCACTCTGCGAGTCCACAGCACAACCAGCAGAACTCAGTCACAGTTAGCCACAGGGGTTGCTATTGCACAAAAAGCCAAGGAAGCCCTTACTGACTGGAGCCCAACCAGCCTGGCAGCACTCAGTCAACTGTACGTCCCCACTTGGGAATCCTGTTCACAGATGGTTTAGACATCGCTAAGACTGAAACCAGCAATGTATGAGTGTAGGTTGAGCCCTATAGTCATCCCTTTTAGGGGTTAACTCATTGGAAGCCTGAATAGACCCTTTTAAATATGTTCTCAATTTAGAGGGGAGAGAGCAAGACAACCCACAAGGCACTTGTGAATAGGGATGTTTTAGAAAGTTTCAAGAATAacatattcaattaaatcaatatagaCATTCCCATTTCCAACAAATTTAGATTTCTCATGGCATGTAGAAATAGAGAAGTACTGACATATCTGATACGTGAATGTAAATTCAGCTGAAACATtcactttaaacaaataaacaaataaaagagaaagcagACAATGTgttcagaaatattaaaaaggaaagaaaaagctaAGTTACAGAAAGGGAATAGAAGTCCATTAAGAGGAATATAAGACACTAATTTGTGTTAATTGTACCAAAGAAGTTAAAGGAAGAATTGTGTGGAACACTGCAAGGGAACTTTAAGATAAGTGAGACTTGCAGGCGATTGTTGAGTttgtttgaacatttaaatagtaaGTCATGATTCAAGAGACAGCAGTCCTTGTTTATACGAAACAGAACATCTGTTAATTCATTTTCTGAGGAACACAATACtctgaaatgtttatatataatgctCAACCGCCTGTACAGGGCCACAGGCTTTGGATTCacgaattaaaaaaatagattagaTTAAGTTGGAAACTGCTTTAATGGAAAGCATTTATATTCCCATGGCAGAAGGTAGAATTTGGCAGTGGAAGAAGGCAGAGTAATCATGCCTAAAAATAACTGGCTATGGGTTTTAAAGACAGGATACATAATGTTTCAGAGAGAAGAGATACCAAAAAGGTAGTTTAAATTTCTAgaagttttaataaatatttgtccCCCACAATTAGGAGTAGGCAGTTATTCCAAGCCTGGCTTACAGCTAAAACATTCCCACACTGAAGAGAGGGCGACAGCACACAAACATCCTTTGAGGGACATCCAGCTTTAAGCCTCTCCTCCCACTCTGATCTCAGAACAAAATCATGGCAGAGCTTTGATGTCAGGAAGAGGACAGACACGCAGCCCTTATTGAAAGatcattttttcctttcacGAAAGAAGCCACTTTACCCTTTTTATTTGATGAAAATCTATCCTGGGAGACATTGGTGTAAATGAAAGGATTGGTTCACCAATAACTATGGCTGACTATTAGTATGAAATTTCTaggaaacaaattatatatatatatttttttttgttcaatggAAGACAGGTTCAAATATCTTTGATAATGTGGTCACCTGCTGTACATTAAAGATGCTATTAAGAGGCTTTGGATTTAGGAACATATTGTATGTTATGTAATGTGGTCCTTGGAATACACCAAGACttacaaaaatgcaatttccaaCAGTGGAAACTGCTCAACCCAGTacaccccacccccaaaacaaaacaaacttaacCATTTTGTATGTTTAGTATAAATATATGGAAGACAAGACTGTAGTTCTATTCTCTACAGTGCTATGAACTCTCTCCTCCAGCAGTGATTGGTTTCAATAGACACTGCTGTTTGTTGGGATTGATTAAGGGGCATCACCTGGCTTCATTccagatacatacataaatcaggGCAGGCGTTTCAAATCTCCTACTTTAAAAGCAGTCAGAATATGAATTGGTTGTGAATTTCTGCCTGTGTGTGGAATCTAACAAATTCTTTGACACTAACATTCAAAGAATTTTACCCAAATAGGTCTGATCCACATTCAATAAAAGGAGGAAGGTGTGCCCACCTGCCCAGACTGATATAAGGTAGCAGTTCTTTTAGCGagaagacatttgtttttgattttagttGTGGACTCGCTATAAGCAGGTTGGCTTATGCTAGAAGCACAGGGCCTTACAACCAATCACTTGAAAATACGGTTGACAGATATGACACCCCTATTAGCATTAGGCAGGAGGGAACGCTGCCAATGCAGAAATACTGTGGTGAATTGTATAGTATACGGTTATTCCTGGTTTTGGCAGCTCAATTTCTAACACCTTATTTATTACTATAGTAACAAGGGCTTTATTACTTCAAAAAGGAAGTGAAACTGGGAATCAGATTTTATCCAGCCGAGACTCATGCAATTCCTCAAATAaacaatgtactgtatatatacagtatattagcAAAATCATAGTAACATTCAGCAAATATGcagtttaaaattgtaatttcaaCTAATATTTTAACTGAATTGTGTAATAGTAATTTGTATTGCTATCATTTATACTCAAACTATATGAATGGACTGACTGTTGTGAACAGGTGAATATAACAGGGGAATCTATGCCACAGTATCTTTTCCTATTGTTTTTTGTGCCATTAGCTGCTTAACAGTTTTTCCTtcagtgtgaagaaaaaaaagattaaaatttaaatctattaaccaattaatttgaaagtgcCCTATGGTGCTACACACTGATTTACTGTTGTGGTATCAAGATATATTGACTGAGAATCTCGTCACTAGCTTGGTGATGTCGTCAGTAGAAAATATCTAACTGGTCATTCGTcagtttgtaaatatttgtgtttatttaaatattataagaTTAAATTATAAGACCTGAAAACcctgcagacacagacagtCAACATATTTTATTCCAAGCCCATGATGGCATTTATGCATTGAAGTCTTTATTTCATAGCTCACCAAAGATGAATTATAGGAAACTGTTGAACATTTGGCTTACTACATAGTAAGTTACCATAGaaattaacaattataatattgtgAATGCCAATATTTCACCTTGAACAGCATATAGGTCTGTACCCAAACAGGGTACGGGAGTTCTTGAATTACAGCCGGTTACAGAGTTTTGCAACAGCTGTGTGGGTCTTTCTTTGAGATGGTCACATTAGCGAAATGTGGTTGTATTAAACCACTGTTCCTACTGGGCCTGTCGCCATGCGTGTTCTGTCCAGATACTGAGGTACACCAGAAGACAGTGAATGCCTCTTTCAGACGCAAGGAGTTTGATGATCTTATGGTAACAAACTGCATGTGCTTCACACAGAGCAACATCATGTATCAAAAATGAGAATAAGAGACCTGGAACTGTCAAGgaggattttttaaattgttatagaCTTTGTAAATGACTACTGTGTGTTGGATAGTCTTTTGGGCCTTTTCATACAGTGGTTGATGGATTAAATTTACTATCAATGTTCTGGGCAATCAGTCCTACTTTAAACCTGAAAGTATAACTATACAGTTTGAAAATGTGCTATAATCCATCTGTGTTgtgcataatacaaattaagaaatgcCTCCTCTTATAAACTGACTGCATGCAATATTTGGCTATATTTAGGTTGTCACTGTTCAATTTATTGTGGGCATATGTCTACAGTCTCACTTAAATCCATCAGGAAGCTCCAGTAGCTTACACTCAGTTAGCAATTTGAACTGATAGCTTGGAAACTGGACTTTCCTTTGTGTTCTGGAGAATGCTGCAGTCACGTGTTACCCATGAGGAGAATGCTATAGACTGCGCAGGTCACTTTACTATACGCCTTGGGGAGGACTGCTGAAAACCAACCCACTTGAGTTCCCTGAAACTCAGGCATTTGTCAGTTCAGAAAATTCAGCAGTGTCTCTAAATAAATCTCTGCTGAGCACCTAATTATTCTAACAACctttacatttactttcaatAATATATGGTTTGTTGCAttctatttcaaataaaaatggtatGCTTTAATAAAG

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0052547 regulation of peptidase activity biological_process
GO:0051336 regulation of hydrolase activity biological_process
GO:0005539 glycosaminoglycan binding molecular_function
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013012 True 4837 mRNA 0.38 3 16678160 16687304

Neighbor

gene id symbol gene type direction distance location
AMCG00013008 LOC101481179,LOC102780800,LOC107388280,LOC103369862,LOC107743796,LOC107577513,LOC107691210 coding downstream 144313 16532750 ~ 16533847 (-)
AMCG00013007 LOC108274136,LOC107754112,LOC107743783,LOC107691214,LOC107566616,LOC107568947 coding downstream 426950 16250137 ~ 16251210 (-)
AMCG00013003 NA coding downstream 523305 16146243 ~ 16154855 (-)
AMCG00013001 NA coding downstream 549927 16108615 ~ 16128233 (-)
AMCG00013004 NA coding downstream 573741 16100316 ~ 16104419 (-)
AMCG00013011 NA coding upstream 29212 16716516 ~ 16718657 (-)
AMCG00013014 LOC107666920,LOC107706881,LOC107669499 coding upstream 45625 16732929 ~ 16735796 (-)
AMCG00013013 NA coding upstream 69083 16756387 ~ 16768362 (-)
AMCG00013019 NA coding upstream 96349 16783653 ~ 16823491 (-)
AMCG00013021 NA coding upstream 156529 16843833 ~ 16889951 (-)
G41538 NA non-coding downstream 54387 16623419 ~ 16623773 (-)
G41518 NA non-coding downstream 344565 16333231 ~ 16333595 (-)
G41510 NA non-coding downstream 460565 16217381 ~ 16217595 (-)
G41506 NA non-coding downstream 469983 16169309 ~ 16208177 (-)
G41460 NA non-coding downstream 642224 16035647 ~ 16035936 (-)
G41612 NA non-coding upstream 459411 17146715 ~ 17146981 (-)
G41627 NA non-coding upstream 614839 17302143 ~ 17302892 (-)
G41647 NA non-coding upstream 789558 17476862 ~ 17477270 (-)
G41648 NA non-coding upstream 790511 17477815 ~ 17479389 (-)
G41655 galk1 non-coding upstream 823829 17511133 ~ 17511904 (-)
AMCG00013018 NA other downstream 39073 16630231 ~ 16639087 (-)
AMCG00012985 NA other downstream 955703 15719513 ~ 15722457 (-)
AMCG00012931 snrpf other downstream 2333688 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 3562673 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 3771827 12896520 ~ 12906333 (-)
AMCG00013038 NA other upstream 1192921 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 1242594 17929898 ~ 18046714 (-)
G41807 NA other upstream 1488757 18176061 ~ 18191522 (-)
G41836 NA other upstream 1555446 18242750 ~ 18244093 (-)
AMCG00013051 NA other upstream 1570785 18258089 ~ 18264843 (-)

Expression


Co-expression Network