AMCG00013017


Basic Information

Item Value
gene id AMCG00013017
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 16642916 ~ 16677331 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013017
ATGGGCCAATTCCTGGAATATTCTGCAGAGAAATGGGGTGACCGAGAGGCCCTGTTCTTTGTGCATGAGGACATCAGAAAGACCTTTACAGAGTTCAAACAAGAtGTGGACCAGGTGGCAGCTGGGTTTCTGGCTCTGGGGCTGAAGAGAGGGGAGCGGATGGGCATCTGGGGCCCCAACATTTATGAATGGATCCTCTTCCAGTTTGCCACGGCACAAGCTGGGATCATTCTGGTGCGCTGCAATGGATTGGCTTTCCCTACCCAGTTTAAAACCCAGAAGTACTATGAAATGTTGAAGCAGATCTGTCCTGAGGTGGAGAAAGCCACCCCTGGTGATATTAAAAGCAGCAGACTCCCAGATCTCCGTACTGTCATTGTTTTCGACAACAAGCTTCCCGGAACCTTCCAGATGTCAGAGGTGAGGCAGGCAGCCACCAATGCCCACTTGGAGGAGCTGAGGATTCTTTCAAAGAAGCTGAACTTTGATGACCCCATCAACATTCAGTTCACATCGGGCACAACTGGCAGCCCGAAAGCAGCCACACTGACGCACCACAACATTGTGAATAACGCATACATGGTTGGCCTCAGGATGGGCTATGACTGGAGGAAAATACGTGCGTGTCTGCCAGTGCCCTTGTACCACTGCTTTGGCTCTGTAGGTGGAGCATTGATGATGGCAGTACATGGTATCTCCCTTGTATTCCCATCACCTGGATACGATGGGAAAGCAACACTCAAGGCCATTGAAAAGGAGAGGTGCACTTTTGTGTATGGCACCCCAACAATGTACATTGATATGCTGGCACAGGCTGCCCTCCACAAATTTGACTTATCTTCAGTGCAAGGGGGCATAGTGGCGGGTTCTATTTGTCCTCCCGAGGTAGTGAAGAAAGTCATGACAGAACTGGAGATAAATGAGTTGACGACCACCCAACTCCTCATCCCAGTGCAGTAG

Function

GO: NA

KEGG:

id description
K23617 ACSF2; medium-chain acyl-CoA ligase, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013017 True 960 mRNA 0.50 9 16642916 16677331

Neighbor

gene id symbol gene type direction distance location
AMCG00013009 NA coding upstream 205055 16436064 ~ 16437861 (+)
AMCG00013006 NA coding upstream 459496 16155679 ~ 16183420 (+)
AMCG00013005 NA coding upstream 497491 16137999 ~ 16145425 (+)
AMCG00013000 NA coding upstream 614090 16022722 ~ 16028826 (+)
AMCG00012996 LOC107567801,LOC107578800,LOC107549326 coding upstream 628606 16008943 ~ 16014310 (+)
AMCG00013010 NA coding downstream 30941 16708272 ~ 16710011 (+)
AMCG00013016 NA coding downstream 69839 16747170 ~ 16757092 (+)
AMCG00013023 kctd2,LOC107727321,LOC107666921,LOC107582756,LOC103398851 coding downstream 792275 17469606 ~ 17476756 (+)
AMCG00013032 NA coding downstream 831956 17509287 ~ 17517737 (+)
AMCG00013029 NA coding downstream 856514 17533845 ~ 17557349 (+)
G41537 NA non-coding upstream 19266 16623420 ~ 16623650 (+)
G41536 NA non-coding upstream 59217 16583402 ~ 16583699 (+)
G41517 NA non-coding upstream 309342 16333290 ~ 16333574 (+)
G41484 NA non-coding upstream 518045 16121443 ~ 16124871 (+)
G41469 NA non-coding upstream 568817 16073514 ~ 16074099 (+)
G41564 NA non-coding downstream 52736 16730067 ~ 16731293 (+)
G41565 NA non-coding downstream 55573 16732904 ~ 16733177 (+)
G41566 NA non-coding downstream 58031 16735362 ~ 16735848 (+)
G41577 NA non-coding downstream 96018 16773349 ~ 16776045 (+)
G41611 NA non-coding downstream 469384 17146715 ~ 17146976 (+)
G41264 hbp1,LOC108230206,LOC107701066 other upstream 824574 15477179 ~ 15818342 (+)
AMCG00012987 NA other upstream 851289 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 1011913 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 1069448 15570906 ~ 15573468 (+)
AMCG00012973 NA other upstream 1072973 15566493 ~ 15569943 (+)
AMCG00013015 NA other downstream 42024 16719355 ~ 16729533 (+)
AMCG00013047 NA other downstream 1481511 18158842 ~ 18230238 (+)
AMCG00013068 NA other downstream 2290098 18967429 ~ 18974362 (+)
G41978 NA other downstream 2348230 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 4592344 21269675 ~ 21278728 (+)

Expression


Co-expression Network