AMCG00013023 (kctd2,LOC107727321,LOC107666921,LOC107582756,LOC103398851)


Basic Information

Item Value
gene id AMCG00013023
gene name kctd2,LOC107727321,LOC107666921,LOC107582756,LOC103398851
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 17469606 ~ 17476756 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013023
cagaccttctttttttatatatagaaaacatAGTCATGCAAAAATAGTACATCTGCTTATTTGTCATCTCGTAAAAACGCtcatgtgtaaaataaaaaaagtggttGCCTGCCGCAGCGCTGCGTGAGAGGGAATCCTGAAATTAGGGCTCTTGGTTTTCCCTGGAAATACAGTAATTGATATCCTGTGTGTAGAGAAGAAATATGGCAGAGCTACACATTGTGGAGCCCAGCAGTACCGGGACCATAGAGCACACGGAGCCCCGGGAGATCCGCGGGTCTGTCCGACTCGCCTCCCCGTCGCTCATGATCCCCACACGGAGCGGACTGACCAGCCCCGGGGTCTCTGCCCGCTCCGGCTTCGGATTCCCATTCAAGAGCCACCCCAGCTCCCCGGCGGACCGCTCGGAGAAGCCCGGGTCCAAATGGGTTCGTCTTAACGTGGGGGGCACCTACTTCGTCACCACCAAGCAGACTTTGTGCAGGGAGCCCAAATCTTTCCTCTGCCGCTTGTGTCAGGAGGACCCAGATCTCGACTCTGACAAGGATGAGACGGGTGCCTATCTGATTGACAGAGACCCCACCTATTTCGGCCCTATTTTGAACTACTTACGGCACGGCAAGCTGATCATCAACAAAGACCTGGCGGAAGAAGGGGTCTTGGAAGAAGCCGAGTTTTACAACATTGCCTCGCTTGTACGATTGGTCAAGGAGAGGATACGGGACAATGAAAACAGAACGTCACAGGGTCCAGTAAAGCATGTGTATCGGGTACTTCAATGCCAAGAAGAAGAACTTACTCAGATGGTCTCCACTATGTCTGATGGATGGAAGTTTGAGCAGCTCATCAGCATCGGCTCCTCCTATAATTATGGTAACGAGGACCAGGCTGAGTTCCTGTGTGTCGTCTCTCGAGAGCTCAACAACTCCACCAATGGCATTGTCATTGAGCCCAGCGAGAAAGCCAAGATTCTTCAGGAACGGGGGTCGAGAATGTGAGGCGGTCAGCAGCTTAACATTCAGAAATCACTGGCCAAGATGGCAAATCCCAAGTCTCAAAGAGCTCTGCAAGGTTTCCTATACACACGGCTGCTAGGGGCTGAGGTGAGGGTGGGGTGGTTGGTGGGGTCTATGTGATGAAAGCGCCGGCCCAGCTTTGAGGCCCCAGCTACCACTGGTGTTTCTTTGCCTCTCTGATGACCAGTGAGTCATGAGCTTCCCTTTACACCCAAAAGGGAGATCGGCAAAATTGTACTACAAAAGATAGagtaattgcaaattaaatgccCAGGATCCCACAGCAATTTTAAAAGTTAGAATTTTccagtgttttgtttacagCCTCACAgaccacattttaaatgtttagacCGATGTTAATCTTCTGAGGATAGGAGACAGATGAAATCATATAGTAGTTTCTTTGGTGGTTGTAGTTTGTCAGTATGGACCAGTTCCTTCCATAAATTTAGATTCTGGAtccattaataagtaattgTAATTACCCAGACCACTTTGATTAACACTggaatttatatatacagatatgtaTACCTTCAAATAGGATCCACATACGAATATGCCGTCAGAATgctgaactgaaaaaaaataattataattgtaggATTCTGCTTATAAACAGATCTTCCGTTCcagtatacagtactgtgcaaaagttttaggcaggtgtgaaaaaatgctgtaatgtaagaatgctctcaa

Function

symbol description
kctd2 Predicted to enable cullin family protein binding activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within protein homooligomerization. Predicted to be part of Cul3-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to human KCTD2 (potassium channel tetramerization domain containing 2).

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD2

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K21914 KCTD2_5_17; BTB/POZ domain-containing protein KCTD2/5/17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013023 True 1721 mRNA 0.47 6 17469606 17476756

Neighbor

gene id symbol gene type direction distance location
AMCG00013016 NA coding upstream 712514 16747170 ~ 16757092 (+)
AMCG00013010 NA coding upstream 759595 16708272 ~ 16710011 (+)
AMCG00013017 NA coding upstream 792275 16642916 ~ 16677331 (+)
AMCG00013009 NA coding upstream 1031745 16436064 ~ 16437861 (+)
AMCG00013006 NA coding upstream 1286186 16155679 ~ 16183420 (+)
AMCG00013032 NA coding downstream 32531 17509287 ~ 17517737 (+)
AMCG00013029 NA coding downstream 57089 17533845 ~ 17557349 (+)
AMCG00013031 NA coding downstream 85974 17562730 ~ 17563944 (+)
AMCG00013033 NA coding downstream 106369 17583125 ~ 17591701 (+)
AMCG00013030 NA coding downstream 124622 17601378 ~ 17638696 (+)
G41638 NA non-coding upstream 3547 17464901 ~ 17466059 (+)
G41611 NA non-coding upstream 322630 17146715 ~ 17146976 (+)
G41577 NA non-coding upstream 693561 16773349 ~ 16776045 (+)
G41566 NA non-coding upstream 733758 16735362 ~ 16735848 (+)
G41565 NA non-coding upstream 736429 16732904 ~ 16733177 (+)
G41649 NA non-coding downstream 3823 17480579 ~ 17486682 (+)
G41683 NA non-coding downstream 100689 17577445 ~ 17577756 (+)
G41740 NA non-coding downstream 444414 17921170 ~ 17985309 (+)
G41743 NA non-coding downstream 453179 17929935 ~ 18013678 (+)
G41744 NA non-coding downstream 527192 18003948 ~ 18018513 (+)
AMCG00013015 NA other upstream 740073 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 1677979 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 1838603 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 1896138 15570906 ~ 15573468 (+)
AMCG00012973 NA other upstream 1899663 15566493 ~ 15569943 (+)
AMCG00013047 NA other downstream 682086 18158842 ~ 18230238 (+)
AMCG00013068 NA other downstream 1490673 18967429 ~ 18974362 (+)
G41978 NA other downstream 1548805 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 3792919 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 3809275 21286031 ~ 21471560 (+)

Expression


Co-expression Network