AMCG00013026 (spata20,LOC104963383)


Basic Information

Item Value
gene id AMCG00013026
gene name spata20,LOC104963383
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 17403379 ~ 17412455 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013026
GGGAAAAACTGTCTGTAGAAGGTGGTTGACCATGGCGACGGGAGGAAAGGACCAAGGGACCCAGAAGCGCACAAACCGCCTGTGCAATGAAAAATCTCCTTATCTCCTACAGCACGCGCACAATCCTGTGGACTGGTTTCCATGGGGACAGGAAGCATTTGACAAAGCAAAATCAGAGGACAAGCCCATATTTCTGTCAGTGGGCTACTCTACCTGCCACTGGTGTCATGTGATGGAGCGCGAGTCTTTTGAGGATGCCGACATCGGTAAGCTCCTCGGTGAGAACTTTGTGTGCATCAAAGTGGACAGGGAGGAGCGCCCGGACGTGGATAAGGTCTACATGACCTTTGTGCAGGCAACAAGTGGAGGTGGCGGTTGGCCAATGAGTGTATGGCTAACCCCTGACCTTCGACCCTTCCTTGGCGGGACCTATTTCCCCCCAAAGGACAGCATGTACAGGCCAGGCTTCAAAACTGTCCTCCTGCGAATTACAGAGCAGTGGAAGAACAACAGGGAAGCCTTGGTGTCCAAAGGGGAACATATCCTGGAGGCACTGAGGAAAGGTACCGCCATTGCTGCCAGTGAGGGAGAGACACCCCCCCACTGCCCAGATGTGATGGAGAGGTGTTTCCAGCAGCTGGCCAGCACCTACGAGGAAGAGTACGGGGGATTCAGGGAATCGCCCAAATTCCCAACCCCAGTGAACCTGAGGTTCCTCTTCTCATACTGGGCTCAGCAGAAGACCTCCACTCAGGGGGCCCAGGCACTGCAAATGGCTCTGCACACCCTGAAGATGATGGCGCTGGGGGGCATCCATGACCACGTGGCTCAGGGTTTCCACCGCTACTCTACAGACTCCATATGGCATGTTCCACATTTTGAGAAGATGCTGTATGACCAGGGCCAGCTGGCAGTGGCCTACATTACTGCTTAC

Function

symbol description
spata20 Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human SPATA20 (spermatogenesis associated 20).

NR:

description
PREDICTED: spermatogenesis-associated protein 20 isoform X2

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013026 True 934 mRNA 0.55 7 17403379 17412455

Neighbor

gene id symbol gene type direction distance location
AMCG00013022 NA coding downstream 268320 17129407 ~ 17135059 (-)
AMCG00013020 NA coding downstream 423836 16922369 ~ 16979543 (-)
AMCG00013021 NA coding downstream 513428 16843833 ~ 16889951 (-)
AMCG00013019 NA coding downstream 579888 16783653 ~ 16823491 (-)
AMCG00013013 NA coding downstream 635017 16756387 ~ 16768362 (-)
AMCG00013024 NA coding upstream 1609 17414064 ~ 17462961 (-)
AMCG00013025 atp5h,LOC101487002,LOC107587968 coding upstream 52034 17464489 ~ 17468508 (-)
AMCG00013027 NA coding upstream 147306 17559761 ~ 17561006 (-)
AMCG00013028 NA coding upstream 163352 17575807 ~ 17586606 (-)
AMCG00013034 LOC107684133,LOC107581645,LOC102777009,LOC108429162 coding upstream 176412 17588867 ~ 17597730 (-)
G41627 NA non-coding downstream 100487 17302143 ~ 17302892 (-)
G41612 NA non-coding downstream 256398 17146715 ~ 17146981 (-)
G41538 NA non-coding downstream 779606 16623419 ~ 16623773 (-)
G41518 NA non-coding downstream 1069784 16333231 ~ 16333595 (-)
G41510 NA non-coding downstream 1185784 16217381 ~ 16217595 (-)
G41647 NA non-coding upstream 64407 17476862 ~ 17477270 (-)
G41648 NA non-coding upstream 65360 17477815 ~ 17479389 (-)
G41655 galk1 non-coding upstream 98678 17511133 ~ 17511904 (-)
G41684 NA non-coding upstream 164983 17577438 ~ 17577756 (-)
G41773 NA non-coding upstream 504045 17916500 ~ 17916939 (-)
AMCG00013018 NA other downstream 764292 16630231 ~ 16639087 (-)
AMCG00012985 NA other downstream 1680922 15719513 ~ 15722457 (-)
AMCG00012931 snrpf other downstream 3058907 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 4287892 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 4497046 12896520 ~ 12906333 (-)
AMCG00013038 NA other upstream 467770 17880225 ~ 17910017 (-)
AMCG00013042 NA other upstream 517443 17929898 ~ 18046714 (-)
G41807 NA other upstream 763606 18176061 ~ 18191522 (-)
G41836 NA other upstream 830295 18242750 ~ 18244093 (-)
AMCG00013051 NA other upstream 845634 18258089 ~ 18264843 (-)

Expression


Co-expression Network