AMCG00013029


Basic Information

Item Value
gene id AMCG00013029
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 17533845 ~ 17557349 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013029
TGTGACAGCCTCCCTCTCTTGGTCAGGATCAGCAGCTTGCCGTGGGTAACGTGAGCAGGTGCAGGGCGGCAGGATGAAGAGGTTCCGGCGGCACGGTCAGGAGACCCACCGAGACCGCCTCAAGCAGGAGCTCTACCAGTTTGCCAAGACAGTGGAGCATGGATTCCCTCACCAGCCTAGCGCCCTTGGGTACAGCCCTAACCTGCAGCTCCTGGCCATCGGGACCCGTTCTGGAGCCATCAAACTATACGGGGCTCCAGGTGTGGAGTTCATGGGGCTGCATGATGAGAATGCTGCCGTCACTCAGATCCACTTCCTGCCACATCAGGGCGAGCTCATCACTCTGCTGGACGACAACAGCCTGCACATGTGGACGCTGCGGGCGCACCAGGGGCTGTCCGAGCTGCTGGAGGTCGGCCGCTTCACACTGACTGGCCCGCCTGGCGCCCCTCCTAGTGTGACACGGGTGACGGCGGTGCTGGCGCACTCCTCAGGGGAGCTGCTGTTCCTGGGCACCGAGGGGGGGCATGTGTTTGTGGTAGAGGTGCCTGGATTCAGGGAGCTGGAGGAGCGCAACATCAGCGTGGAGGCTGTGCAACAGAGCCGGGGCCTGATGCTCACCTGGGACCTGGATACCAACTGTTCAAGACATCACTTCCTGGGCACACAGCAGTTGGAGAGTGTATGGTGGACGCCCGACGGGCAGCAGATCCTCAGCTCCCACAGTGACGGCAGCTACTGTCAGTGGACACTCAATGACGAGGACAGGCAGGCCGAGCCCGACAAACATGAGATGCCTTACGGTACCTTCCCCTGCAAAGCCATTTCAAAGATTATGCAGCTGTCCACCAAACAGGGTCCTCCATTCCTGATCTTCAGCGGGGGGATGCCGCGGGCAAGCTACGGCGACCGTCACTGCATCTCTGTCATTCACAGCAAGACACACGTGGCGCTGGACTTCACCTCCCGCATCATTGATTACTTTGCCACCACCTCAGGGGCCCAGGGCAAAGGGGAGCCCAGTGCCCTGGTGGTGCTGGTGGAAGAGGAGCTGGTGGTGGTGGACCTGGAGACGGAGGGCTGGCCGGTGATCCAGACGCCCTACCTGGCCCCCCTGCACTGCTCAGCCATCACCTGCTCCCACCATcCCTGGCCAGTGAAGGGAGGACAGAATCTGGCCCCCGATGCCCCCCAGAGAGACCTCCTCCTGACTGGACATGAAGATGGGACAGTGCGGTTTTGGGATGCTTCGGGGGTGTGCCTGTACCCCCTGTACAAGCTGAGCACGGCGGGAGTCTTTCACGCCGACGCAGACACCACCGACAACATGAACCACGGGGCCGAGGGAGAGTGGCCCCCATTCCGCAAGGTGGGCTGctttgacccctacagtgatgACCCCCGACTGGGCATCCAGAAGATACACCTGTGTAAATACAGCGGCTACTTGGCAGTGGCTGGCACCGCGGGGCAGATCGTGGTGTTGGAGCTGAACGATGAGCCAGCCGAGCAGCTGGTGGAGGGGACGCTGGCAGACCTGCTGCAGGGCCAGGAGGGTTTCCGCTGGAAGGGGCACACGCGGCTAGAGGTGCGCGAGGAGGCCGTGGCCTTCCCCGCCGGCTTCCAGCCCTTCGCCCTGGTACAGTGCCAGCCTCCCGCTGTCGTCACATCGCTGGCCCTGCACTCCGAATGGAAGCTGGTGGCCTTTGGGACCAGCCACGGCTTCGGCCTCTATGACTACCAGCAGAAGAACACCGTCCTTGTCAGGTGCACTCTGAATCCCAGTGACCAGTTGGCTTTGGAAGGCCCCCTGTCCCGGGTGAAGTCCATCAAGAAGTCCCTGCGCCAGTCCTTCCGCAGGATTCGCCGCAGCCGCGTCTCTGTTAGGAAACACCATGTGGGCAATGCTGCCAAGctgcagGAGATCAATGCCCGCCTGGAGGCGGAGGCGCTGCAGGAGATGGAGCTGGCCCCAGTCCAGAGGAAGATCGAGGCGCGCTCCTCAGACGACTCCTTCACTGGCCTCGTCCGAACACTTTACTTCGCAGACTCCTTCCTCAGCGACGGGTCCCAcaactccccctctctctgggcTGGAACCAATGGCGGCTCAGTCTTCGCCTACACACTGCGCCTGCCGCCCAGCGACAGAAGGATGGAGGATCCAATCACAGCATATCCTGCAAAGGAGATTCAGCTGATGCACCGTGCTCCAGTGGTGGGCATCGTGGTCCTGGACGGACGGGGGGCACCCCTTCCTGAGCCTCTGGAAGTGGCACACGACCTGGCCCGCAGCCCCGACATGCACAATGCTCACCATCTGCTTGTCATCTCAGAGGAGCAGTTCAAGATGTTCACGCTGCCCAAGGTGAGCTCCAAACTGAAGCTGAAGTTGACGGCGCTGGACGGCTCTCGTGTTCGCAAGGTGGGCGTGGCGTCATTCGGGAGCAGCCGCGTGGAGGACTACAGCGAGAGCGGCCTGGTGGTGCTGACCAACCAGGGCGACCTGCACGTAATCTCGTTGCCAAGCCTCAAGATGCAGGTGCGCTACCCCTGCGTGCGCCGTGAGGATGTCAGCGGCATCGCCTCCTGTGTCTTCACCAAGTACGGCCAAGgCTTCTACCTGATCTCCCCCTCAGAGTTCGAGCGCTTCTCTCTGTCAGCGCGGTGGCTTGTGGAGCCGCGCTGCCTGGTGGagctgccccccaccccctcctcctctgccagCAAACCCCTGCCCAGGGCACAGCCCGACGGGGCAGCCGTCCAGCACAGGAATTTCAGAAGAGACCGTGAAAACTGTGAAGAAAACGTGTCCCCGAGGGTGATGGAACATGCCTTACTCAATGACGAGAAGGTGCTACAGGAGATCCAGAGATCCCTAGAAGGAGACCAAACGAGTTACTTGGAACACCACTCCAAAAGCAAACCAGGTGGAGGGAAGCTCATCACTAATGGAGGTGAGAGCAGCAGGGGTGAGTAGCACATCCACAGCCCTGAGGGTTCAGCAGACTGATCGGTCGGCAAGAAGTGCTCAGTGTTCAAAGGTTTTGCCACAGTCATAACCTGATTAGATTGTGAAAACCTCTTGTTTAAGCTCATAGCTTCCCTCAGTGCCCAGTGTGATATTTTAATCTAATACcttgaatgttgttttttttttgtgtttgtgtgttatttggTTGGTTGGAACATTTggataaaatataattgtgatttTGCTCAGAATGTGTCCATTCTAGATCTTTCTTCATAGTGATTCTGCAGGCAGCTCCAAACCTCCACCAAACCTAACACACACTTTTTGTTAATGCTTGGGAGTCTTTACTCCCTTATGGTGCTTCTGATCGTCTATCCTCCCAGTTGATTTCTCTCTAATTCCACTGGCTCCAGAAAGCATTTGTAATAAGTACTTGTATGGCAAGAGCACAGATCCACCATCCGAAGGATCTAAAGAACAGTGGGGACAACAATCAAACACTTCGGTGCCACgataaactgtgtaaatgtaaCTTCTTAATTGACCTACCTGCGTGTGTGTAAGCCCACAGGTCTAGTAAGTGTCTGTTCTACTAATACCAATTGTAGTCACTTTAAGTGCACATTTATCTCTGGTCCTGTGGATGCTGAACTACACTGTCTGTTTCTCCCAGAGTGACTCGTGCCATTCCTGGCCTTGGAGTGTGCCCGCTCCTGCCACCACCCCAGTAACACTACTGACCCCCCGCCCCTCCCCTGGGCCTGGGAGAGGGCACCCCTCACACTGCTACTgtacagagagggaggagggaccACCGCCAGTGCCTCTGCAAACTACTGCGACGCCGCCTGCCTTCAGAACCACCGTACAACGCACCTACCCACCCAGCCAGCCCGAAGGCTGGGTTTTGCACAATCACTCCCGCTACCCGAAAGGAAGAGCGGGGGGCAGTAAGGATGTCTTGTGTATTCAAAGAGGAGTTTGTATTGTTTGCGTTTCTCTGTGTCGTGGTGCCTGATAGGTCATGTAATACCGTGTGCAGCCCAATGCTCACTACCACTAGCAGGATACCATGGTCACTTCAGCACAGTAAATATGCGGCACTCTCCTGAGCAAAAATGCTAGTCGGCACCTTGGAAAGTGTAGATTAAATTTGGTGGGAGAACTTTTTAGAACAGACTGACCGTGGTTTAAAGTATTGTGCTTGGTGCTAACATGAAAGCCTTTGgaagctgtttttatttccGCTGAACTACCACTGCTATTATAATAAACCACAAGTGGCCGGCTTTGGAAAAGCCTACCCATATGTCACTACAGTTGTTTAGGTGACCTATGAACATGTTTGATAATAATTGCCATATTGCCTCAAGTTACTGACATTAATCCTGGCTAATTCAACAGACAATTCAAATAAGTACATTTAGCTTGGATGCTATGGATGCCAGGATCAGGGTTGAATAGAAAACCCTTTCCCTCTGATAAGACTGACAGGAAGTGTCGTGGGGAAGTATTTAACTGTCACACACCACTGAAGTGCATCAAACTCTTCTCATTTGTGGAAATCATGACCACCGCGAATGTACACCAAACTAGCAGAGAACTGCACAACAGGATACAAGACAAGAGATTGAAAAGAGACCAAGCAGAGAAATGCAGATGCATATAAACTTCTATTGAACTGCCTTTGTAGGCACACCGGACAGTATTCACAAAGCATTAGTGTTCCAGTCCGCTGCGTGTCCTGACTGTCACACTAGTGGTTTAAGAGTACAGTCCATGGATCTTAATTCTAGGAGGTACTTTTTCCACTGCTGTGTAGCACACATTGTCATTTcgggggatttttattttatttttaaactttctatGGGGTGTCttcagtaattgtattttttattttttcacaatggaaaatgtaatttaggaatgtatgtttttaatattttaggcaaattttaatatatatacatatacagtatatatgaaaATCTGAACTTGTTTTTATAGAGGGTTTTTTGGGGTGGCTGCTATTTTCTTTTCGTAATCTTGACAAGGAAATATTTTGGTACCATCTTTACGAAATGTGGGGTATTTTGTAGCGTATtctagatttatatttttgtagcGAATCAATGAGGATGAAAACCCTAATTATGATAATTCACACTACATCCTGCTGCaggaataaatgttttttttccacaaggtaactgcctctgtctctgtcatttGGAGGTACTCGCATC

Function

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0031581 hemidesmosome assembly biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0010719 negative regulation of epithelial to mesenchymal transition biological_process
GO:0050680 negative regulation of epithelial cell proliferation biological_process
GO:0007049 cell cycle biological_process
GO:0048919 posterior lateral line neuromast development biological_process
GO:0045682 regulation of epidermis development biological_process
GO:0030336 negative regulation of cell migration biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K06094 LLGL; lethal(2) giant larvae protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013029 True 5229 mRNA 0.53 24 17533845 17557349

Neighbor

gene id symbol gene type direction distance location
AMCG00013032 NA coding upstream 16108 17509287 ~ 17517737 (+)
AMCG00013023 kctd2,LOC107727321,LOC107666921,LOC107582756,LOC103398851 coding upstream 57089 17469606 ~ 17476756 (+)
AMCG00013016 NA coding upstream 776753 16747170 ~ 16757092 (+)
AMCG00013010 NA coding upstream 823834 16708272 ~ 16710011 (+)
AMCG00013017 NA coding upstream 856514 16642916 ~ 16677331 (+)
AMCG00013031 NA coding downstream 5381 17562730 ~ 17563944 (+)
AMCG00013033 NA coding downstream 25776 17583125 ~ 17591701 (+)
AMCG00013030 NA coding downstream 44029 17601378 ~ 17638696 (+)
AMCG00013035 NA coding downstream 99770 17657119 ~ 17688640 (+)
AMCG00013040 NA coding downstream 291407 17848756 ~ 17852896 (+)
G41649 NA non-coding upstream 47163 17480579 ~ 17486682 (+)
G41638 NA non-coding upstream 67786 17464901 ~ 17466059 (+)
G41611 NA non-coding upstream 386869 17146715 ~ 17146976 (+)
G41577 NA non-coding upstream 757800 16773349 ~ 16776045 (+)
G41566 NA non-coding upstream 797997 16735362 ~ 16735848 (+)
G41683 NA non-coding downstream 20096 17577445 ~ 17577756 (+)
G41740 NA non-coding downstream 363821 17921170 ~ 17985309 (+)
G41743 NA non-coding downstream 372586 17929935 ~ 18013678 (+)
G41744 NA non-coding downstream 446599 18003948 ~ 18018513 (+)
G41810 NA non-coding downstream 682643 18239992 ~ 18240369 (+)
AMCG00013015 NA other upstream 804312 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 1742218 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 1902842 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 1960377 15570906 ~ 15573468 (+)
AMCG00012973 NA other upstream 1963902 15566493 ~ 15569943 (+)
AMCG00013047 NA other downstream 601493 18158842 ~ 18230238 (+)
AMCG00013068 NA other downstream 1410080 18967429 ~ 18974362 (+)
G41978 NA other downstream 1468212 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 3712326 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 3728682 21286031 ~ 21471560 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000055_01694900_01711518 LLGL2 coding CI01000055 null 1694900 ~ 1712042 (+)