AMCG00013038


Basic Information

Item Value
gene id AMCG00013038
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 17880225 ~ 17910017 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013038
CTTCCAAAGGAGGGCAGATGGATCTGTAGATTTCCACAGAGAGGGTTTGGGTCAGGGACCTCAGAGTTCTGTCTGGggaacaacaatattaatacccTGACCAGTGCAGGCAATCTAAAAGGAGGCAGGACTGCTGGACTCTTTAAATACAGCCTGTCTCATAAGAAGACATCATCCCTGACAtcgagagagatgagagagagagcggacTGTCTCTTGACCAGCAGCACAATGTTTCTTCAAAGTCTTCATGAAACTCTTATCTTGTCCTTGTGCCTCTCTGTGGTGTTGGGCACAGAAAGCACCTGTCCAGGGGTCAGAGGACAACCAGGAGCTTTTGGAAAAATAGGCCCTGTTGGAATCAAAGggCAGAAAGGAGAACCTGGGGATCAATACAGCAGCACCAGGCCTGGGAACTGTGAGGACCTGCTGGACCTGGGTAGCTCCCTGAGTGGCTGGTACACAGTGTACACAGGGGAAGGCAACCCCATCCATGTCTACTGTGACATGACCACTGACGGGGGGGGCTGGCTGGTTTTCCAGAGAAGGATGGatggatcagtggatttctacAGAGACTGGACCTCCTACAAGAGAGGGTTTGGGAACCAGGAGTCAGAGTTCTGGTTGGGGAACAACTATATTCATTCACTGACCAGTGCAGGCCGGGTTCTCCCTTGGTGCCTGGAGTGCCAGGGCTGCCCGCTGTCCCAGGGTGTCCTGGGCAGCCCTGAAGGAGAGTCAGTCTCTCATTGTCGTTCACACCCACAACTTTCACCACTGAAACACAGGAGCACAGCCTCATCAACAACACCTGGAGCACAGAGCTGGAGAGGACAGCTGCAGggcAGAAAGGAGAACCTGGGGATCAATACAGCAGCACCAACTGGGCAGGGAGGCAGTGGTCCAGTCAgctgtcagtgtgccagtgttgtCCTCTCAGGGCCTGGGAACTGTAAGGACCTGCTGGACCTGGGGAGCTCCCTGAGCGGCTGGTACACAGTGTACACAGGGAAAGGCAACCCCATACGTGTCTACTGTGACATGACCACTGATGGGGGCGGCTGGCTGGTCTTCCAGAGAAGAATGGatggatcagtggatttctacAGAGACTGGACCTCCTACAAGAGAGGGTTTGGAAACCAGGAGTCAGAGTTCTGGCTGGGGAATGACTATATTCATTCACTGACCAGTGCA
>TU52042
CTCTTCCATATCAACTGAggagacactcacacagagtCTGACAGTGTGCTGTTAATCCAGCTGTGTTCAAGGACAGCAGTTCCAGTCTAAAAGGAGGCAGGACTGCTGGACTCTTTAAATACAGCCTGTCTCATAAGAAGACATCATCCCTGACAtcgagagagatgagagagagagcggacTGTCTCTTGACCAGCAGCACAATGTTTCTTCAAAGTCTTCATGAAACTCTTATCTTGTCCTTGTGCCTCTCTGTGGTGTTGGGCACAGAAAGCACCTGTCCAGTGGTGAAAGTTGTGGGTGTGAACGACAATGAGAGACTGACTCTCCTTCAGGGCTGCCCAGGACACCCAGGGACAGCGGGCAGCCCTGGCACTCCAGGCACCAAGGGAGAACCTGGCCTACCAGGCCCTGAAGGGGTCAGAGGACAACCAGGAGCTTTTGGAAAAATAGGCCCTGTTGGAATCAAAGggcAGAAAGGAGAACCTGGGGATCAATACAGCAGCACCAGGCCTGGGAACTGTAAGGACCTGCTGGACCTGGGGAGCTCCCTGAGCGGCTGGTACACAGTGTACACAGGGAAAGGCAACCCCATACGTGTCTACTGTGACATGACCACTGATGGGGGCGGCTGGCTGGTCTTCCAGAGAAGAATGGatggatcagtggatttctacAGAGACTGGACCTCCTACAAGAGAGGGTTTGGAAACCAGGAGTCAGAGTTCTGGCTGGGGAATGACTATATTCATTCACTGACCAGTGCAGGTG
>TU52046
NaacgtacaaaatcagcagaggatcaaatacttttttccctcactgtacatacactataatatacatacagaaTAACTTAATCAGGTTTTATACATTACTGTTGTTAGACTATCATTACTCAAGGCATTCTTACAGAGACAATTTGTTGCAGCAGCGCATACCTGaggaaaaaaagatgaaatTTTATTGTTGAGAAAGGAACAAAAAGTACCAGGCATATGAAATTgaagtgtgtgcatgtgggagAGAGGTCCAATCCACTGTCAGTGTGCTGTTGTTGTCCTCTCAGAGCCTGAGAACTGTTAGGACCTGCTTGATCAGGGGAACACGACAACCAAGTGGTACTACAAAGGACGGCAATTCCATTAGTGTCTACTGTGACATGGACACCGATGCTGGCGGCTGGCTTGTGAGTGAACTTGGTTGGAAAAGTAAACCTGTGAGGTTTACATCTCACTTTTAGGCAGCTGTGTCCACTCAGCACTCTCAGCAGAATCTAACAACTTATGATTTGTTGTATATTGCACAGGTATCAGAATAacttaaaccaaaacaaaataacttcaaATTCAAGTTAAGGCAATTAAACACTGTATATATCTTCCCTATACTGCAAAGCATCATCACTGCCTTTAAAGAAATGATCCACAGTTCTGTCACTCCTCCCTCGGTTTTGTGGTTGCAGGTCTTCCAAAGGAGGGCAGATGGATCTGTAGATTTCCACAGAGAGGGTTTGGGTCAGGGACCTCAGAGTTCTGTCTGGggaacaacaatattaatacccTGACCAGTGCAGGCAAGTGTAAATTTGGtatcacatttttcttttcacatggAACACAGACCTGATTTGGACTGTAAGGGGCGAAGGAAAGGCCAGTTTAGCAATAATTCACAATTTGGTGGTATTGCAGTTGTTTCTCTTGTGGATTGAAAATGTCTAACAAAAGTCACACATATTCCAGACACTCCCCAATTAGcatgtgtaattaattatttgaatatagAGCACAATGCGAAATGTTGCTATTCAACgcattttccaattaaaaaataatgtggaaaTTATATGTTACCAAGGtccaaaaaattatatatatttcaaaaagttataaaaaaatatacctCACCGTCCATGGTCCCACATAGCAATTGACTTTGTCACCGACCTCCTCTGATCTCAAGGTTTTATGATGCACAGTTATTGCAAcaatatagattggacagaaataaaatattgtttgttactaGTTAAGTAGTTTCTTCTGCTACTGTCAGAAATGCGGCATTGTCAGGTGtaaaggtggtgacaatgttgtggtatctggcaacaggggaaaaacaacaatgtagCAGAGATGTTTTGGGAccatcacagccttcaataagcagaatttcaCATCAGACCACAATTTCATTAATAGCACCCGAGATTGTTTGACAATTTATTGATATCACCATGGCAAATATCCTCAAAACAagccacattcataatcaataggctagcctattttCATCAAGGGTTTACATTAGGCTACACCAATTCCATCCAactatttttaacacaaataaaagtaaaatataagccgcaaaatgtatttgtattttatattcaatacagaaaaaatagcAAATCGgtgtaaaatatatgaatataggcctaccccagtgtttccacctgtggacaatttcctatATACAACAGAAGTAGGGAcatggagagggggagggcagccccttttcattcccctgcccttttttttctgatgtgcCCCACTTGTCCCGATCGCCCCTCCACTGATCCATGCCACGATCCGCAACTGGGAAGCTGGAATGCACAATTagctaaaaaacaaatactataattggatcctactcccagctaaaATTAGGTGTAAAAGACTTTcagatggattttaaaaagggtGCAATTTCATGGTACTTGCGTTCAAATGCTACTCTCCCTTGCATTTAGCTTTTagtctgtaatttaaaaagatcACAGACCTCTACGCCTGGCAATGCAGCAGCAACTTTTGCCAGGTGGAACCAAATGTATGCCTCATTTATTCAGCTAATTTGCAATGAACCACCCTATTTAAATGAGGCGTGCGCCCAGGTTTGCAACGGATGGAAGTGAAGAAGGCACACCACCTGACAAATTTGTAcgtatgtatgttttgttttattgtagatATTGGTTATTAACTCTAATCACTTTCTCCGGGTGATAGTAATGTGTGAGCAAATAGGGGTTTTGATTTCTGAACACAGCCTCATTACCTTTTGGTGGGGTTATTGGAATATGAGTCGAGTCTATACATCCCATGACTTTTGGGattccaaatatattttaaaactcacATTGGGTCTTTACTTGCTCTCTTTCTGAAATCGGAAAGCAAATGTATTGTGTCATGTTGAACCAAATGACAAAGTATTCGCTTTGCAATTTCAGAATCGATTCATCAAAACATCTGTGACTTCTGtgatacattttgatacatttttatatggaGGACCTTGTTGGTCACATAAACATGTAGTGCTGTGGTCATAGTCAATACAGGAATTGCATGATTCTTTCTGGTGGGTGATTCTAGATCTTTGTAGGAAAGATCTGGAAAGCCATTTTGCAGGAACAAACTAGAAATCAAGAATCGCAACTTGGACTTGCACCACCCATTACCTTGACTTGACTCGCAACCAGGCTGCAAGGGACGATACGTTGTGCTTAAAATTACTACCTGCGCTTcttattaacatgttttattcaacAGGTTTATAAATCATATACACAATTCTAACATTTTTCTGGAGAAATCTCAATTCCCAACAAccccaaaaaactgaaaaatagttTACTACACTGCCACAGATCAAAGAGGTTACAGGCAGGCAAGACACCCGTCAGCAGAGGTGCTGACCAGGACCATCACATCTCAGCAGGAGCCAGCCCCACAAATCAAAGAGGTCGTCGTCCCTTGGACAGATGGTTAAACAACAAAGCACCCCTCTCCAGACACCTTTGGAATGCAAGAAGCACAGCCATCAAGATGACCGAGAGTAAGATGAGGCTCaccagaaaaaacatttgacacCCAGCACAACCCTGTCTCATCTGCAAGCATACCAACTAAAACCTTAGAAACAAAGAATGGATGATTTCATATTTAGTAGCAAAACACCAAAAATTACCAGTTTAATATAGGTTCCCCCCCTAAATTAATATCAAACAGGACAATGGACCatggcactcagaccaactccATTCAAAACTAAAGTAACAGTGACAACAAAAGCCAAACAATATTCAAACACATCCACATATGTCATGTTTAGTCTCGATTGAAAAGGCATTCAACCAAACGAACGACTAAGTAAAAGACGACTAAATAATGCACTAAACAAACCATAATCACAACTGCTTCCACAATGTAACTCCCTCTTAAGAGGACAATAGGACTCCTAGTGCCCAAGAGAAGGAGGGCACTGCGACAGCCCTTAAATGGACAcaaacagatatatattttttaaattcaccgATTACAATTGAAACCCTGCCTAGCACGCATATGTCTGAGGCCCAAAAGGGGGATTCTAAAAGATAACACAATCTAGAACAGCTGGAAACTAAAATGATTTGTCATTGATTTATGATGTCAAAACATGCCACCTtgtttaatatcaaattaaagaggAGAACTAAAGGATCTAAAAAATGTGAATACTAACCCCACCATACTTATACTCAGAAAATTATCCATAAAAAACTATTTAGGGACAATATCTAAAAGTCATGAAGGCTGCAACCTTCCAATACACATCTTAGCAAAAGGGGGGATAGACAGCCCGTCAAAAGGACATCTGAAATTTACGACATCCAAATCAACCATTCAGAAATTGGAGGGACAAAGAtcagaatctctttgtctaaaacatATAGAAATCATGGTTATAAACTACCAATTTGGAGAAGAACCCAGGAAGATTGGAATACACAGAAGTGGAAACCCAGGAAGGAATCCGGACCAGAACTTCTCTACCAACAACCTGGAAGCTTGGCAACAAAGTCCTCAAGTTGACACAGTCTATCAGGCCTCCCTGCAATTGAACTAAACCTCAGTAAACCACGCAGGTAGTAAACTTATTTACATGCTTTGTGCCTTGAGTCAGACTTGagtaatagatagatagatctctctctctctcacacacacacatgcacacacactctctctcttttaatccTATCCACCCTGCTTTTCTCCCTTCTATCTTTACAATTACGTgttgtccatttacattttattaataaacatatatcctATTTGAACGAAACAGCCTCATGGTAAATTCATGCAGATTAACCTCACTGctaatctgaatttgtattagtaaagtattgtggtaacttgcttATCAACCCGGTCTTGTTTTAAGAGAACTTGACcactgtgggttgtatgtgtgggggtcactagataataggactttattcagcaaatTATAATTTCTTCTGAAATTGATACCAGATGAAATGGAAACTCTACTTTAAAGTCCTATGacaatcgaaagtacttactaataaaacaataactgtaatgataaattaaaacaatttggctgtatcttatcagatcagcaacctttcatttcattaaactatttacaggtTACGCTCATTCAGTGGAATTCGATGCAGATGAGATGAGTGCACCTTTACGCCAGACATAGGCACTTCTTCAAAATTCAATTTCTTTGACATTGCTGCCATGGACATGTTTTTGCTATCTTCCCTTGTTTTTCAGTGATTGCAAAGTTGACTTAgtacatttttacacttttaaaatgtatgttgtggAAATGGCAATTAACTAAAACTATGCCAATAATTTGGAGGAAAAGGTCATTTGCTTTAAATCAGAGtcttaaatgtttctttgaactctaaaacattttaatttttactaaattaaaacattgttagaaaattaaaaatatatatatgaagagggtgcagattaaaatacttttcatcCCAAGGATCCCACAGCTCATAACtacaaattagtatttttaaaaaagaacaagaagtAAGCAGGCATAGTAACAGGACTgataaagacaaaatataaataaggatTCCTTCTTTTCCATCATCTCTCATGGCGGcctcctccctcctccatcCTTTTTCTGCCTTGAAACACAGACTTCATTTCGTCTTTCTGATTAGATGTCAGATATAGAACATGCTATTAAGAATGCAAGAGCCCTCTGTTGCTACACTGCCTGCTGGCATGATCTCTCACTGAGGTctaattttcatttcacagaGCTTATAGGAATACTTATGACCTTTCCCAGCTGCCCAGTTGATTCCATTGGCGTAACTTTCATGAGGTCCTCCCAGATAGAGACCGTTCAGGTTAGAGCTGTGACACTTCCCATACCACCAGCCCCCTTTGTAAATGCTACTACAGTTGCAATCACAGACATCATTGTCTCGATCTTTGGTGGAAAAGAGAAGGTTGTTGTGATCAGTCAAGGAATCACCTG

Function

GO: NA

KEGG:

id description
ko04913 Ovarian steroidogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013038 False 1200 mRNA 0.53 10 17880229 17909329
TU52042 False 771 TUCP 0.53 7 17880225 17899426
TU52046 True 5563 lncRNA 0.38 2 17903448 17910017

Neighbor

gene id symbol gene type direction distance location
AMCG00013037 NA coding downstream 105627 17710609 ~ 17774598 (-)
AMCG00013036 NA coding downstream 172300 17693373 ~ 17707925 (-)
AMCG00013034 LOC107684133,LOC107581645,LOC102777009,LOC108429162 coding downstream 282495 17588867 ~ 17597730 (-)
AMCG00013028 NA coding downstream 293619 17575807 ~ 17586606 (-)
AMCG00013027 NA coding downstream 319219 17559761 ~ 17561006 (-)
AMCG00013039 NA coding upstream 4073 17914090 ~ 17914526 (-)
AMCG00013043 NA coding upstream 179676 18089693 ~ 18108396 (-)
AMCG00013044 NA coding upstream 229558 18139575 ~ 18149178 (-)
AMCG00013049 NA coding upstream 283995 18194012 ~ 18239155 (-)
AMCG00013048 jmjd6,LOC107654591 coding upstream 334178 18244195 ~ 18255349 (-)
G41684 NA non-coding downstream 302469 17577438 ~ 17577756 (-)
G41655 galk1 non-coding downstream 368321 17511133 ~ 17511904 (-)
G41648 NA non-coding downstream 400836 17477815 ~ 17479389 (-)
G41647 NA non-coding downstream 402955 17476862 ~ 17477270 (-)
G41627 NA non-coding downstream 577333 17302143 ~ 17302892 (-)
G41773 NA non-coding upstream 6483 17916500 ~ 17916939 (-)
G41772 NA non-coding upstream 60287 17970304 ~ 18056712 (-)
G41811 NA non-coding upstream 329948 18239965 ~ 18240369 (-)
G41813 NA non-coding upstream 330451 18240468 ~ 18242535 (-)
G41839 NA non-coding upstream 349110 18259127 ~ 18259406 (-)
AMCG00013018 NA other downstream 1241138 16630231 ~ 16639087 (-)
AMCG00012985 NA other downstream 2157768 15719513 ~ 15722457 (-)
AMCG00012931 snrpf other downstream 3535753 14340416 ~ 14344472 (-)
G40778 LOC107575789 other downstream 4764738 13114893 ~ 13115487 (-)
AMCG00012906 kin other downstream 4973892 12896520 ~ 12906333 (-)
AMCG00013042 NA other upstream 19881 17929898 ~ 18046714 (-)
G41807 NA other upstream 266044 18176061 ~ 18191522 (-)
G41836 NA other upstream 332733 18242750 ~ 18244093 (-)
AMCG00013051 NA other upstream 348072 18258089 ~ 18264843 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other upstream 1067043 18977060 ~ 19022778 (-)

Expression


Co-expression Network