AMCG00013041


Basic Information

Item Value
gene id AMCG00013041
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 17866214 ~ 17889767 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013041
CAACAATTAAACTGGAATAGAAGCAGGACAGCTGGACTGTATAAATACAGCCTGTCTCCATGAGAAGACATCAATGCtgacagcgagagagaggacAGTTTTTTCACCAGCAGCACAATGATTCTCCAGAGGCTTTGTGAAACCTTCATCCTGTCCTTGTGCCTCTCTGTGGTGTTGGGCACAGAAAGCACCTGTCCAGTGGTGAAGGTTGTGGGTGTGAACGACAACGAGAGAATGACTCTCCTTCAGGGCTGTCCAGGACATCCAGGGACAGTGGGCAGCCCTGGCACACCGGGCACCAAGGGAGATCCCGGCCTGCCAGGCCTTCCAGGGGTCAGAGGACAACCAGGAGCTTTCGGAAAAATAGGCCCTGCTGGTAACAAAGggGAGAAAGGAGTACCTGGGAATCAATACAGCGGCACCAGACCTGGGAACTGTAAGGACCTGCTGGACCTGGGGAGCTCCCTGAGCGGCTGGTACACAGTGTACACAGGGGAAGGCAACCCCATCCGCGTCTACTGTGACATGACCACTGACGGCGGGGGCTGGCTGGTCTTCCAGAGAAGGATGGatggatcagtggatttctacAGTGACTGGACCTCCTACAAGAGAGGGTTTGGGAACCAAGAGTCAGACTTCTGGCTGGGGAACGACTATATTCATTCACTGACCAGTGCAGGGACTTATGAATTGAGGGTAGACTTGAAGGATTTCGACAATGTTTCCACTTTTGCAAAATACCAATCCTTTAAGATTCTGGGGGAATCGGAGAACTACAAACTCATTCTGGGTGTATTTGAGGCTGGTGATGCAGGTGATTCCTTGACCGATCAGAACCACCATCTCTTTTCCACCAAAGATCGAGACAACGATGTCTGTGACTGCAACTGTAGTAGCATGTACAAAGGGGGCTGGTGGTATACAAAGTGTCACAGCTCTAACCTGAACGGTCTCTATCTGGGAGGCGCACACGAAAGCTATGCTGATGGAGTCAACTGGTACACTGGCAAAGGCCATAACTATTCCTATAAGCGCTGCGAAATGAAAATTAGACCTCGCTGTGGGATCCTTGAGAagcaaaTGGTGAAAGTTGTGGGTGTGAACGACAACGACAGACTGACCCTCCTCCAGGGCTGCCCAGGACACCCAGGGACAGCAGGCAGTCCTGGCACTCCGGGCACCAAGGGAGAACCCGGCCTGCCAGGCCCTCAAGGGAATCATGAATTGAGGGTTGACTTCCAGGAGTTCGACAATGTTTCCACTTTTGCAAAATACCAGTCCTTTAAGATTCTGGGGGAATCTGAGAACTACAAACTTGTTCTGGGTGGACATGAGGACAGTACTGCAGGTGATTCCTTGACTGGTCACAACAACCTTCTCTTTTCCACCAAAGATCGAGACAATGATGTCTGTGATTGCAACTGTAGTAGCATGTACAAAGGGGCCTGGTGGTATGGGCAGTGTCACAGCTCTAACCTGAACGGTCTCTACCTGGGAGGCGCTCATGAAAGTTATGCCGATGGAATCAACTGGGCAACTGGGAAAGGACATCACTATTCCTATAAGCGCTGCGAAATGAAAATTAGACCTCAactaatTCTAGTTATGAGCTGTGGAATCCTTGagattaaaaCAGTCTGAAAGGAGGCAGGACTGCTGGACTGTATAAATATAGCCTCAATGAGAAGACATCAACGATGATAGTGAGagaaaggacagagagaggaaagctTCTTGACCAGCAGCACAATGATTCTCCAGAGGCTTCGTGAAACCTTCATCTTGTCCTTGTGCCTCTTTGTAGTGTTGGGCAAAGAAAGCACCTGTCCAGTGGTGAAAGTTGTGGGTGTGAACGACAATGAGAGACTGACTCTCCTTCAGGGCTGCCCAGGACACCCTGGGACAGCGGGCAGCCCTGGCACTCCAGGCACCAAGGGAGAACCCGGCCTGCCAGGCCCTCAAGTACTGAACAGAATGACGGAGTGTGAGTGAAAGATGTGGAGCAATCCAGAGAGATTTTCCCTCTCCAGATGGAAATCGTATAATTGCGTTGGATTGCCTCAATCCCTCCAACATCACCCTGGGGACAGCTGCTCCAGTCACAGAGGAATCTGTTTGGCATCTCCATTTCTATGTTTCAGGGGTCAGAGGACAACCAGGAGCTTTTGGAAAAATAGGCCCTGCTGGAATGAAAGGGCAGAAAGGAGAACCTGGGGATCAATACAGCAGCACCA

Function

GO: NA

KEGG:

id description
K10104 FCN; ficolin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013041 True 2237 mRNA 0.51 17 17866214 17889767

Neighbor

gene id symbol gene type direction distance location
AMCG00013040 NA coding upstream 13318 17848756 ~ 17852896 (+)
AMCG00013035 NA coding upstream 177574 17657119 ~ 17688640 (+)
AMCG00013030 NA coding upstream 227518 17601378 ~ 17638696 (+)
AMCG00013033 NA coding upstream 274513 17583125 ~ 17591701 (+)
AMCG00013031 NA coding upstream 302270 17562730 ~ 17563944 (+)
AMCG00013045 NA coding downstream 261685 18151452 ~ 18154122 (+)
AMCG00013046 NA coding downstream 365678 18255445 ~ 18258332 (+)
AMCG00013053 mfsd11,mfs11 coding downstream 376501 18266268 ~ 18280801 (+)
AMCG00013052 NA coding downstream 442958 18332725 ~ 18351553 (+)
AMCG00013054 NA coding downstream 469788 18359555 ~ 18362887 (+)
G41683 NA non-coding upstream 288458 17577445 ~ 17577756 (+)
G41649 NA non-coding upstream 379532 17480579 ~ 17486682 (+)
G41638 NA non-coding upstream 400155 17464901 ~ 17466059 (+)
G41611 NA non-coding upstream 719238 17146715 ~ 17146976 (+)
G41577 NA non-coding upstream 1090169 16773349 ~ 16776045 (+)
G41740 NA non-coding downstream 31403 17921170 ~ 17985309 (+)
G41743 NA non-coding downstream 40168 17929935 ~ 18013678 (+)
G41744 NA non-coding downstream 114181 18003948 ~ 18018513 (+)
G41810 NA non-coding downstream 350225 18239992 ~ 18240369 (+)
G41812 NA non-coding downstream 350701 18240468 ~ 18242583 (+)
AMCG00013015 NA other upstream 1136681 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 2074587 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 2235211 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 2292746 15570906 ~ 15573468 (+)
AMCG00012973 NA other upstream 2296271 15566493 ~ 15569943 (+)
AMCG00013047 NA other downstream 269075 18158842 ~ 18230238 (+)
AMCG00013068 NA other downstream 1077662 18967429 ~ 18974362 (+)
G41978 NA other downstream 1135794 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 3379908 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 3396264 21286031 ~ 21471560 (+)

Expression


Co-expression Network