AMCG00013050 (srsf2,srsf2b,LOC105012916,LOC108430244)


Basic Information

Item Value
gene id AMCG00013050
gene name srsf2,srsf2b,LOC105012916,LOC108430244
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18265139 ~ 18265498 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013050
ATGAGTTACGGTAGGCCGCCACCCGATGTTGAGGGCATGACTTCACTCAAAGTGGACAACTTGACTTATCGGACATCGCCAGAGACGCTGCGGAGGGTCTTCGAGAAGTACGGCCGCGTCGGAGACGTGTACATCCCCCGTGACCGGTACACGAAGGAGAGCCGAGGGTTCGCCTTTGTTCGCTTCCACGACAAGCGGGATGCCGAAGACGCGATGGATGCCATGGACGGAGCTGTGCTGGACGGGCGGGAACTGAGGGTGCAGATGGCCCGCTACGGGCGTCCCCCGGAGTCTCATCACGGGCGCCGCGGAGGCCCACCCCGGAGGTACGGGGGATACGGCAGGCGAAGCAGAAGgtaa

Function

symbol description
srsf2b Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be active in cytoplasm and nuclear speck. Human ortholog(s) of this gene implicated in acute myeloid leukemia and myelodysplastic syndrome. Orthologous to human SRSF2 (serine and arginine rich splicing factor 2).
srsf2 Enables RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within regulation of alternative mRNA splicing, via spliceosome. Located in cytosol and nuclear speck. Implicated in acute myeloid leukemia and myelodysplastic syndrome. Biomarker of clear cell renal cell carcinoma and pulmonary neuroendocrine tumor.

NR:

description
PREDICTED: serine/arginine-rich splicing factor 2 isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K12891 SRSF2_8, SFRS2A_B; serine/arginine-rich splicing factor 2/8

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013050 True 360 mRNA 0.63 1 18265139 18265498

Neighbor

gene id symbol gene type direction distance location
AMCG00013048 jmjd6,LOC107654591 coding downstream 9790 18244195 ~ 18255349 (-)
AMCG00013049 NA coding downstream 25984 18194012 ~ 18239155 (-)
AMCG00013044 NA coding downstream 115961 18139575 ~ 18149178 (-)
AMCG00013043 NA coding downstream 156743 18089693 ~ 18108396 (-)
AMCG00013039 NA coding downstream 350613 17914090 ~ 17914526 (-)
AMCG00013055 NA coding upstream 26672 18292170 ~ 18293312 (-)
AMCG00013063 NA coding upstream 293450 18558948 ~ 18564943 (-)
AMCG00013065 NA coding upstream 507127 18772625 ~ 18788291 (-)
AMCG00013066 grin2c,LOC105022923 coding upstream 539514 18805012 ~ 18820165 (-)
AMCG00013067 NA coding upstream 653066 18918564 ~ 18926388 (-)
G41839 NA non-coding downstream 5733 18259127 ~ 18259406 (-)
G41813 NA non-coding downstream 22604 18240468 ~ 18242535 (-)
G41811 NA non-coding downstream 24770 18239965 ~ 18240369 (-)
G41772 NA non-coding downstream 208427 17970304 ~ 18056712 (-)
G41773 NA non-coding downstream 348200 17916500 ~ 17916939 (-)
G41848 NA non-coding upstream 14062 18279560 ~ 18282630 (-)
G41849 NA non-coding upstream 18130 18283628 ~ 18284531 (-)
G41850 NA non-coding upstream 20053 18285551 ~ 18285996 (-)
G41851 NA non-coding upstream 30147 18295645 ~ 18295946 (-)
G41858 NA non-coding upstream 66312 18331810 ~ 18386206 (-)
AMCG00013051 NA other downstream 296 18258089 ~ 18264843 (-)
G41836 NA other downstream 21046 18242750 ~ 18244093 (-)
G41807 NA other downstream 73617 18176061 ~ 18191522 (-)
AMCG00013042 NA other downstream 218425 17929898 ~ 18046714 (-)
AMCG00013038 NA other downstream 355122 17880225 ~ 17910017 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other upstream 711562 18977060 ~ 19022778 (-)
AMCG00013070 NA other upstream 802747 19068245 ~ 19071418 (-)
G42076 NA other upstream 1714838 19980336 ~ 19982880 (-)
AMCG00013090 NA other upstream 2265696 20531194 ~ 20545811 (-)
G42366 myhz2,LOC106598369,LOC104955241 other upstream 2986609 21252107 ~ 21301421 (-)

Expression


Co-expression Network