AMCG00013052


Basic Information

Item Value
gene id AMCG00013052
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18332725 ~ 18351553 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013052
ATGATCAAGGTAGCAGTTGTGGAAgtgtcatgtttgtgtttgcaggACTCGGATTTGCTGGCTCATGTTCAGAAGGCCATCCTCCAGTTGCAGGCCGAGTGCGAGAAGCTGAGCAGCACAGCCAACCACCTGCTGGAGGAACAAAgccagaaacagaaacacattgaCAGAGCTCTGGACTCCAAGGTGAGCCGACTGCAGTTTGACACCACGACTGAGCAGCTGAACAGCATGTTCCAGGAGCTGCTGAACAAGATCTCCGGGCAGGAGCAAGACTGGCAAAAGGTCATCGAGAAGATCTCCTCAGAGATGGAGTGCAAGCTGAACCGTATGGAGCTGGACCCTCTGAAGCAGCAGCTGGAAAGTCGCTGGAAGGCCATCCGCAAACAGCTACAGGAGCAGCCCACCCCCCAGTACAAGGTGGACGACGCTGCTGGCATTAGGAAGCAGCTGGTGGCTCGATTCCACTGCATTTCCTGCGACAGAGCAGTGGACATGGCGGCACCTGGATCGTACATGGTGTCCgttccctccctccctggctTTCCCTCCCACAAGTCCAGCAGGCCCTACACTGTGTACGAGCTGGACCAGGTGCGCCAAAACAGCAGGAGCGAGCAGATCTCAGAGGTGTCAGACTGCGACTACCTGGCAGTGTCCCGGAGCTGTGGGGGCAGCCACACGCTCACCTACCCCCACCGCCGCGGTACCCGCCTGCAGCAGGTCGCACAAACCATACAGGCTGAAGAAGAGGCCCAGCCACCACTGAGCTCACAGTTCGAGGAGATTGATATCCTGGGTCTGGATGGACGCATCTACAGAGGCCGCATGGACCCCCGTGCGTGCTCCCGGATGGACTCCAAGCTCCCTACTATCTGTCCCAAAGACAGCACACGCAGGAGCAAAGACAAGGTGGACCTCTCATCATCCCAGAAACCCACCACTGTTGAGCAGTTGCCCACCCGGCAACAGAGCGCCAGGACTCAGCGCGGCCACTCAGccCATTCAGCTTCTGCGCGCTCTCTCGGGGAACGTCCCACGTCCTCTTTCAGCCGGCGGTGCCAGACCACCACTGTCCGGCCCCCATCACCAGTGGAGACCGCCAGGGGGAGACAGGGCACTCTAGAGATCCACATGGACCTCAGCCACTCGACGCTTGAGGAGCCAGTGACATCGCTGTGATTGACAAGAATCTTTGATGTCACACAGACAATTTTTTATGTATCTCTTCAATAAACCCAGTGGCATGGCACTAGGGGGGGGCTCAATTTGTGGGCTAGTGGCATTTAACAGGCAATATGTCTACATTCTTCAGGGCTTGATTCCATGTCTCTTGTGGGTAGAATACTGTCGGCTATAAATTGGTACCCAGCTAACACTTTAACATTATGTCTAATTTGTCACAACGTTCCCAAAAAAATAGAATGTTGTTGCAACATGACTACAACGTTTCATTGACATTACAGTGAAGCTGTGACAGTGTAGCTGAAGTTGGGACAATGTAAAATCGTATACAGTATATGATTAAACAAGGTGGAAAACAGTACTGATTGATTACAACTATTTCAAATGGGTATTTATTACAGATGtgttgcaaataataataattaattaaccttAGATCTACATTATGATATGTTTTGACAACGTTTGTTAGCTGGGTATTGGGTATTGGCTGTGCAGATAACAACCATCACACTAGCAATGTGAATTACTGTGGGGGTGGCCTGACCAGCAGAATATGCCATTGACAAATGGACCTGGGTCAGGGTTCAAATTCCGAGGGTATCCAGTCAGTAGTAATCCAGTCGGTGGTTTGCAGTTAGTAATCAGTGTTTTGAGGACAGtggctgtgttttcatgcatgtgtCAGTCATGCCAAATGTTGTGCTTAAAGTGTCAAATTGAAATGAGTAAGGCAaaattacaacagcagtgctCCATAGACAAGTACTTATAATTTCTGTCCTGAAGGGCTTGCTGTATTGTATAAGAACTGTGTTTGCTATGCAGTGTGGTTGCCATGCAGATTGCTCTTAGAATGCACTGCAAGCGGTGCCATTAATGAACGACGTGCAACAGAGCAGCACTAAACATGTTcacatgttcatgttttttattatgttttagttCATGTTTTCAGAATACAGTCATCAGGGAAGTGCCAGCTGTTCAAAGCACGTCAGACGTAAGTTTCCCATTATTCAACCTTACCCAGAGCACTACGGCAAGCCCATCCGGACAAAACTCCAAGGACTTGTCTGTGTCACACCGCTGTTGCAATTCAGCCTGACCCATTTCAATGTGGCAAAGGCATTGGTATGCCAGCTATCCAGGGCTGAAGACAGATACCTCCAcagcaaacacaacaacagcgacctgtgacacacacagcactgtgaaACCACACAAGCCCATGCTTCATTTCACCACACTTCAGAAATACTAGCAGAGTTCTGAGAAACGTAGCATCTCTGTGACTGAGTTTCACACAGTTCTGCTCTCCTGGTGTGTGTCTTACAATCCCCTCCAACTGATAGAGAAATGCCTACCTGCTGCACAGGTGCCTCAGTCACTATCAGAGATTTGAGAGTCATTTCTCTAGTTGCCATTCTCTATCCAGTCCTAGCTGTGCTCTGGTGATGTGATTAGGTGTCAACGTGCCTCAGGAAGTCCCCATTTAAAGCCCTTTCTTCTTCACAGAGCAGTGGAGAGCACTGGAAGAAGTGTGTCAGAAAGGGGGTAGATTGGAAAGCCACATTTTATTACAAGGACAGATATTGGTACCTGCCTCAGAAGAAAAAGCAGTATGCCCCACACATTGCAATTAGTAATAGTCTTGGCAGACAGTATCTGCGAAGTCTTTAATACGTGCACTTTTCAAAAGCAGATTCGGAATACTGGAATGTTTCTATTAtgtttgattgttgttttcttctcgCCTGTGATGAGACTGTAGCAGATTCTAGACTGTAGAGGGCGATGTTTCCCAACACTGCTGGAGAGCAGTCGAATGGATTCCCCCACACGCTCGAAAGCGCTGTTGTACCTCTGTTTCTGCCATTGTATTCTTCACAAGATGCACTTTAATTCCTCGACCAGCACTTTAATTCCAGCCAGGCATCTCTGTTGTATCTTAAGACTCGTCAGCAACGCTCTTTTTAGCACACAGAGTCAAGtggattgtatttaatttaatttgattccttactgtttttctttatctggGATAGGTCCAAATTATACGGTGAGGGTGTGGTATCTATGTggcattttgatattttaattgtaatcaatTTTGAAAGACACAAAGGTTATAACCTCAAATTCCACAAAATGGGGAGCTTGGTCAGATTAAAATGTTCAGCCCCCAAAATAGCAGATTCATTCAGTTGTCCCAAATATTCCCGAGTCTATGCTATAGAATGTAATTCTGTGAAAAACGAGTGGATACTGCTGTTAGTGTCTGCTCCGTTTTATGCTTGGTATTATAACGGACACATATGATCTCAGTGTTCAGGCTGAGCATTTTAAAGTGGCAGGAGTCCAAAacccttattttttttaaatactttgacCAGTCACTCTGACAAAGGGCATGCCCGCATATATCTTTGGCACACATACCTCAACTGAATTTTGGCTTGCGGAAGCCCAGCCCAACAGCTgtatttgctttgtgtttgtttctgtatgtttataaataaaatagtggACAGATTAaacagcactgttttttttgCACTACAAACTGAACAGAATCAAAACACATATTGGGGTGTAAAGATTATTACCATGTGAagttctaaattaatttttcTACATGTTTAAGGACAATTGTTCTAAACTGAACCTCCTATAAATTCAGAGCTGATATTTTCACAGTTGAAAGGCTGCGAAAAGGTCTTTCCACCCATCTGTCTTACTTGCTGCTCGTTGCCTTTGGCACCAGGAGTTTTAGCAAGAGTAATGGATCACAAAGGAGTCAGCGACAAGAATATGGTTCAGCAGTTTTGCTCCCTACACTCAcaactgtgtgtgtacagaagTTTCAGTCTCGCTCCTTAAAGCCTCATCCTAATACTTGAATCAAATCATTGCGCTTGGCGTGGGAAAACGTAGGATGATTTGAAGCTCACATTTTGCCAGTGAAGTCTGAAGAGGTTACAGCTGGAAGTGACTTATTCCAAATTCATAATCTATGTATCTCAAATGTattagtatttatatatgtaatgtaagaataaaa

Function

GO: NA

KEGG:

id description
K24298 QRICH2; glutamine-rich protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013052 True 4249 mRNA 0.46 9 18332725 18351553

Neighbor

gene id symbol gene type direction distance location
AMCG00013053 mfsd11,mfs11 coding upstream 51924 18266268 ~ 18280801 (+)
AMCG00013046 NA coding upstream 74393 18255445 ~ 18258332 (+)
AMCG00013045 NA coding upstream 178603 18151452 ~ 18154122 (+)
AMCG00013041 NA coding upstream 442958 17866214 ~ 17889767 (+)
AMCG00013040 NA coding upstream 479829 17848756 ~ 17852896 (+)
AMCG00013054 NA coding downstream 8002 18359555 ~ 18362887 (+)
AMCG00013057 NA coding downstream 37258 18388811 ~ 18396122 (+)
AMCG00013056 NA coding downstream 55158 18406711 ~ 18433678 (+)
AMCG00013061 NA coding downstream 89042 18440595 ~ 18444746 (+)
AMCG00013059 NA coding downstream 111038 18462591 ~ 18471589 (+)
G41823 LOC107575789,LOC100846954 non-coding upstream 33811 18298625 ~ 18298914 (+)
G41822 NA non-coding upstream 36779 18295645 ~ 18295946 (+)
G41821 NA non-coding upstream 47870 18283628 ~ 18284855 (+)
G41818 srsf2,srsf2b,LOC105012916,LOC108430244,LOC106612293 non-coding upstream 67030 18261963 ~ 18265695 (+)
G41814 NA non-coding upstream 88582 18242783 ~ 18244143 (+)
G41908 NA non-coding downstream 308701 18660254 ~ 18660522 (+)
G41924 NA non-coding downstream 345267 18696820 ~ 18697632 (+)
G41990 NA non-coding downstream 715420 19066973 ~ 19068210 (+)
G42054 NA non-coding downstream 1234975 19586528 ~ 19586793 (+)
G42077 NA non-coding downstream 1634625 19986178 ~ 19987860 (+)
AMCG00013047 NA other upstream 102487 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 1603192 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 2541098 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 2701722 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 2759257 15570906 ~ 15573468 (+)
AMCG00013068 NA other downstream 615876 18967429 ~ 18974362 (+)
G41978 NA other downstream 674008 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 2918122 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 2934478 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other downstream 3019290 21370843 ~ 21421316 (+)

Expression


Co-expression Network