AMCG00013053 (mfsd11,mfs11)


Basic Information

Item Value
gene id AMCG00013053
gene name mfsd11,mfs11
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18266268 ~ 18280801 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013053
GAAACATCCATTAATATACCGCATTGTGTCAGAGAGTTCTGCCTAACGCAATTCGGCAGATAGTGTAATGGTTAAACAAGCGCTTTTCcatatcttttatttattgtgcattGGACACAACATGACCGAGTCAAAACTTCATATCCCGAAAGCCGCGCTGCAGTGCTGCCTGCGAGGTCAGCTGACCAGCTCACATGACACGCCAGGCTCAGTCATACCCCGAATGAAATACTTTATTGCTGGGGAGTTACCGCTTCAATGTTGGACGGAGAACTGTAAATAAAGCTTCatcatctgattttttttttgtattgttgacTTTGGACTGTGGCTGGGACTTCAGTATGGTTACCAGCAGTACGAGAAACTAACCGTCAATAAAACGCACATTCATATTCACTCAAGAGTTCATCACAAGtaggGTTTGTGAAACGCCTTCGTGTTGGGTACAAGGACAACCGCAGACATGTCTCCTGAAGGCAAAACCCTCCTAAACATTATAATCCTAGGTTTCgggtttatgtttatgtttactGCCTTTCAGACCTGCGGGAATGTAGAGCAAACCGTGATAAAGAATTTTAACAGCACTGACTTCCATGGCAGTGGATATACAagCATGGCCATTATATATGGGGTGTTCTCGGCCTCGAACCTCATTGCACCGTCTGTAGTGGCTGTAATTGGACCACAACTGTCGATGTTCATAAGCGGTCTGGTGTACAGTGGTTATATTGCAGTGTTCATCTATCCTTTGACCTGGTCTTTCTACACGGCCTCTGTAGTGGTTGGCATAGCAGCAGCAGTCTTATGGACAGCCCAGGGCAACCTTCTGACCATCAACTCTACAGATGACACCATTGGCAGAAACAGTGGGATCTTCTGGGCTTTGTTGCAGTTCAGGGACCGGCGAACAGTCTTCATCTCCCTGACGGTGATCAGCCTGGTTGGCagcttcctcttcttcctcatcAGGAGTCCCGAACCTGAGGCCACTCCTTCTGAAGCATCTGAATCTCTCCTGCAGGCAGAGTCTGCCGATATCCAGAGCACTGCACCGACACCACCAGGAGTACGCTCCCCAGCCCTGGAGGCATTCAAGAAAGCCCTTCAGCTGTGCTTCACCAAAGAGATGATGCTCCTTAGTATCTCCATTGCATACACAGGCCTGGAGCTGACGTTCTACAGTGGTGTCTATGGCACCTGCATTGGTGCCATGACCCGCTTTGGTGACGATGCCAAGGGTCTGATTGGGCTGTCTGGCATTTTCATTGGCATTGGAGAGATCCTAGGAGGGGGCTTCTTCGGCATGCTCAATAAGCGTAACCGTTTCGGAAGGAATCCCGTGGTACTACTGGGACTGGTCACCCACTACCTGGCATTTTACCTGATCTTCCTGAACATTGCCAGTGACGCGCCGATCGCCCCTGAGGAGGGAACCCAGTTGCAGGCCTTCATTACACCCAGTGTGCAGGTAGCTCTGCTGTGCAGTTTCCTGCTGGGCTTGGGAGACAGCTGCTTCAACACCCAACTGCTGAGCATTGTGGGATTCATGTTCCCGGAAGACAGCGCCCCAGCCTTCGCCATTTTCAAATTCATCCAGTCCATCAGTGCGGCGGTGGCCTTCTTCTACAGCAACTACCTCCTCTTGCAGTGGCAGCTCCTCATCATGGTAATCACAGGCTTCTTCGGGACCCTGAACTTCTTCCTGGCTGAACGGCTGGCTGTGTCAATTAGGCGAGACTCCGACTACGACAGCATCTGACTAGAGGGAGTGGCCACAGAGATCCCCGCTCGCTGGGAGTGGAGAACATTAACTGAGTGTTCCAGGGGTGGGCAGGGAGTTCGCCCATGCGTCCCCACTGCTCATGACTGACACAGCACTCGGGGTTGTGGAGTTCCCCAaccccccctccttctcccttcCCACCATCTCACCGCCATTCACCCTTCCAAGTTCCCCTAGCAATTGTTTGCACACACGGCCAGCAAAAACGCACACTGGAACCCAGAGCTACCTAAAAGTAGACATCAGCTTcactaaaaacacaaatcaccaAACCAGAGTTTGTCCATGCATCACAGACTAACTCACAGTGGGTCAAGATGGAATatgtggttgttttctttttgttttgtttgtttgtttcactttgGTCGCAGAGTCAAATCTTGCCCAAGTGACTGATTCGCTTTCATGCTTTCACAGCGAAATCATTTACAGTTTCCTTGTTTGACTGAAATTGCTAGGCCGTTAGAGAATGTTAGTTCTGGAGGTAGTCAACTTTTATCACAATTCTACCCAGCTCAGAATCAAACCCAAACAGGCAAAACTGAAAGGGAATGAAACTGGATTCCAAACATGTAAATACAGACTGATTTGTCATCGCATCTGCTTGTACAGTAAATGAAAACCGATTTCACAAATTAATGCGAATTTTGCACTTAAAGTACAGATTTCTCAAATTTCTGGGCTCACATTTGAAACGTGCACACCCAAATAGAGgaaccgat

Function

symbol description
mfsd11 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human MFSD11 (major facilitator superfamily domain containing 11).

NR:

description
PREDICTED: UNC93-like protein MFSD11

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013053 True 2514 mRNA 0.49 13 18266268 18280801

Neighbor

gene id symbol gene type direction distance location
AMCG00013046 NA coding upstream 7936 18255445 ~ 18258332 (+)
AMCG00013045 NA coding upstream 112146 18151452 ~ 18154122 (+)
AMCG00013041 NA coding upstream 376501 17866214 ~ 17889767 (+)
AMCG00013040 NA coding upstream 413372 17848756 ~ 17852896 (+)
AMCG00013035 NA coding upstream 577628 17657119 ~ 17688640 (+)
AMCG00013052 NA coding downstream 51924 18332725 ~ 18351553 (+)
AMCG00013054 NA coding downstream 78754 18359555 ~ 18362887 (+)
AMCG00013057 NA coding downstream 108010 18388811 ~ 18396122 (+)
AMCG00013056 NA coding downstream 125910 18406711 ~ 18433678 (+)
AMCG00013061 NA coding downstream 159794 18440595 ~ 18444746 (+)
G41818 srsf2,srsf2b,LOC105012916,LOC108430244,LOC106612293 non-coding upstream 573 18261963 ~ 18265695 (+)
G41814 NA non-coding upstream 22125 18242783 ~ 18244143 (+)
G41812 NA non-coding upstream 23685 18240468 ~ 18242583 (+)
G41810 NA non-coding upstream 25899 18239992 ~ 18240369 (+)
G41744 NA non-coding upstream 247755 18003948 ~ 18018513 (+)
G41821 NA non-coding downstream 2827 18283628 ~ 18284855 (+)
G41822 NA non-coding downstream 14844 18295645 ~ 18295946 (+)
G41823 LOC107575789,LOC100846954 non-coding downstream 17824 18298625 ~ 18298914 (+)
G41908 NA non-coding downstream 379453 18660254 ~ 18660522 (+)
G41924 NA non-coding downstream 416019 18696820 ~ 18697632 (+)
AMCG00013047 NA other upstream 36030 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 1536735 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 2474641 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 2635265 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 2692800 15570906 ~ 15573468 (+)
AMCG00013068 NA other downstream 686628 18967429 ~ 18974362 (+)
G41978 NA other downstream 744760 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 2988874 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 3005230 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other downstream 3090042 21370843 ~ 21421316 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000351_01165103_01169247 MFSD11 coding CI01000351 null 1165103 ~ 1169506 (+)