AMCG00013056


Basic Information

Item Value
gene id AMCG00013056
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18406711 ~ 18433678 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013056
acCTCTATAGTTCCCCTATGCTGCCCCCCCGCCTCAGGAGCCAGTGAAGACCTTACGGAGCCTGATTAACATTCGCAAGGACACCCTTAGACTAGTCCGgtGTGGTGAGGAGGTGAAGACGCCCAGGGAGGAAGTGGGTGGAAAGAGCAGGGCCTGCTACAATGTGGAGTTCACCTTTGACGCTGACACCCAGGTTGCTATCACGATCTACTACCAGGCCACGGAGGAGTTCCACAATGGAGTTCCCATGTACATCCCCCAGGACAACTCCCTGCAGTCTGAGACGGTGCATTTCAAGAGAGGCGTCTGCCAGCAGTTCTGCCTGCCCTCCCATTCCATCAACCTGTCTGAGTGGAATGATGAAGAGTTGCTGTTCGATATGGATAGGGACACCTACCCCATGGTTGTGCAGGCCGTAGTGGACGAGGGAGAGGAACATTTAGGTCATTCCCATGTGGATGGAGTCAGTTACCTCCTCCAGGAGATCTACGGCATCGAGAACAAGTACAACACACAGGAGTCTAAGGTAGCAGATGATGAAATCAGCGACAACAGCGCAGAGTGCGTGGTTTGCCTGTCAGATGTCCGAGACACCCTCATTCTGCCCTGCCGCCACCTCTGCCTCTGCAATGCCTGTGCAGACACCCTGCGTTACCAGGCCAACTGCTGCCCCATCTGCAGACTGCCCTTCAGAGCCTTGCTGCAGATTCGTGCGATGAGGAAGAAGATGAGCCCTCTTTCTCCCACAGGATTTAACCCCGTCATCACCTCCCAAACCTCTGATTCTGAAGAGCACTCGGCCTCGGAGCACATCCCTCCTGGGTACGAGGCCGTATCCCTGCTGGAGGCCCTCAATGGCCCCCTGAGCACATCGCCATCTGCACCCCCATTGCACAGCCTGACTGGGGGGCACGTCTCCGGCCCCCTGCCCTCCTACACCAGTGAGGGCCACGGCTTGCCCGCACGCAGCCTCTCCCCCCTGGATCGCTCCATCGACTCTGGCCAGGGgctcaaactgaaaaaaagtgGCTCCAAGTCTTTGTCCCAGAACTCCTCTGTTCTGCCCGAGGAGGACGACGAGAAGTCCTGCGGTGAATCAGATATCCGCTTGTGCCAGAGGAAGGTCCTGGATGACCAACCAGAGAATGGAGTGACTCCTGAGAGCGAGAACTTGACCCTGTCTTCTTCCGGAGCCATCGACCAGTCCTCCTGCACCGGCACCCCTCTGTCCTCCACCATCACCTCTCCTGAAGACCCAGTGAGCAGCAGCCTGGCCCAGTCTGTGATGTCCATGGCCTCCTCTCAGAGCCAGCACTCCCAGCTCAGCACTGACACCATCTCCTCTATGTCAGGCTCCTACATGGCCGGCGCGGAGGGGGAGCCCCCAGAGACCCCCGTGGAGAGCCGCGGAACCTCGCAGGAAGGGGAGGAGACACCAGTGGAAACCAAGGAAAACAACTTCATGGCCATCGTTGCAGAGGAGCAGGATTCGGAGGGGAATGATGTGACCGAAGAGGAGAGCCCTTCACCGACTCAGGAGCAGGGTGGGAGGAGGACGAGCGAGGTGCCTTGTCCTGAGTTTGACAATAACAATCAGGGCGTGACCCCCTGCTTGACAGGGCTGGACAATGAGCTGTGCCCTGACGCCTGCATCGCTGAGCTGGTATTCAGAGGGGGCCACAGGCTGGGGCGAGGGCTCCTACAACACCACGCCTCCACTAGCAACATtgccctggaggaggagggggaggaagagggtGTCTCCCCCCAACCACGACACTGTGGACCTCTTGCTGTTTAACAACTAATACCCCCCACTCACGTACACCCTACTTTCTCGATGCCCCAAATCTCACTGGGGTCCACCCCCGAACCTTGGCATCACTTACAAGACCCCTGCCTCCCACAATTCCAAGTTTCTGGAGGACAACTACAGCTGCAACCATCTCCCTTGTTTCCTAATGGACAGTAGCTCTCGGGGGCAAGTTTGCCAAGTCTCCCCAAAATAAGCAGGTCTAAGACCTGCAGGTCTAAGTGATGCACCTTGCCTGACTAAAGTGATTTGAAACCCCTAACCACCTGCCTCAACTCCCCCCACCCAGCTTTCGGTGAAAAGGTGACTTTCCCTTCCTTATCTTTTTTGTATGGGGGGGATCTTCACCAAATCCACAGCTGAACTTTCCTAAAAACTTTGCCCGCGCAGGCCAATCTTTCATCGTGAGACTCTCCCTGAAGCCAAGCATGCTGCCCACAGCCTTGATGAAAGCAGTGAATGTATTACAGCTAAGCCACATGGGAAGAGACTACAGAATGCTACactactacattttttttttccgtttccTCAGTCAACCCATTAGGTTTCAATCTTCCTTGTAGACTTTGTATTTTGGGTGAATGAATTACCTTGATGGAATTCCAACACTGGACAGCAGCAGCATTGAGTTCCCTAGGTGTGCTGTGGGAGTTCTGAGTCACAACTTAGGTATGTAGGGTTTCTGTGCatgatgcacaaaataaattggTTAATTTGCAAGTAGAAAGATACATGGTTGAGCATTTGCAGTGTCACTAGCCTGGGGTccaaataaatggaaaacaatttaaaaaataataatttaaagggTTATATGGCATTTGGTTTTAGAAATCCCTACAGACTCTGGGATAAAAGCAGTAAGGTGCACTGCTGTGACAACATACAAGGCTTCTTGAAGCCTTGTACAAGGCTTCATGCAGCTGATTTTCTTGGTAGTGCTTGGTAGTTTTTTCAAGGTCTCCAGAACACGGGGAAGTGGTTTTAAGGGATGTAGGGCTCACTTTAACATATACACTGTGAGGACCAGCTTGGCCTGGCAAGGTGTGCGTCTCAGAGAAGCAGCCTACCCATTCCTGCCAAGGTCAGCAGAAGCAGTGCATTCTCAAAAGATCCCTGCCCACTTTCTGGAGCAAAACCATgagatctttatttttatttgtttgtttgctcttgTGCTAGTCTGTAGACTCTCTTGATTTTCTTGAATTGTGAATGCACTTAGTTGTACTAGTACTTGATTTTGAGTTTACCAGGGAGATTTCTGTTTCGTTACACTCAGGCCAATTTGTTTCCAATGGGCCAATTTTGctgcattgcttttttaatttaaatgtatctttgttATAGCTTAGCATATGtagtttaatttctcattcatttgGAGTAATACAGTTGATTTAACACTATAACATGTACATTCTTCAGTTTCTTAAAAAGTCCATCAGTTGTAAATGAAGGAAGATGAGCTCGATAAGGATGCTGcttttgtaaattgttactTTGTGAGGCTATTTACTGTTAGCTAATTAATGTCAATGAAATAATAGTTGaataaatgaaaggaagaaacTCATCTAGCCCCCATGCTagtgacacattttgaaaatatttttgcttGTAGTCCACACTTCCACTCTTTGTTGAGATGGAACTGACAAGCAACAGTGATGGCATTCTGATTATGTAAACCCCTTGTAGTTTCAAACAGGCCCTCTTCAGAAGCAATGAGGTTGTGTAAGGCATACACCGAAAAACATTccataataaacaaaagcataattTGTCCGAAGCCCTGGAATGTAACTTAAGTCTTTAAAACAAGGATGAGAATGTATGTTGCCTAGAGAACTTAAAAggttgtcatttatttaagataaataacacacacacatacacacacacaaactacaatGTCTTTACTTGAACTGGGCTCACTTTAACTTTGCAATGGTCAATTCCTCCTCGACACCTCACAGTTTTTGCGTTCTGTCCAAGTGATTGAGGGCTTCCTTGTGCTCTTTGGGTGTCCACTTTTTTTTATACCAGGCCGTTGCTGGTGAGATTCCAAAAGCGCTTCACAAAGGAAAACACTAAAGCAATAAAATGTCTGTCTCTCCACCATTCAATTTTGTCTGTGCTGACCTGTCTGGAGGGTTGTATCTGCCCCATTAAAACCCACAGACTTCCCCTCCTAATGAGCTGCAACTATACAGCCCTGCATGCcatgtatatatctatctatatatgtatataaaagaaACAACCTTATTTCTCATATCTCTGTCAATCACAATAAAATGATGCATGTCATCTAGTGACACTGGAATGATTTTAACAGGAAAACCATATATATCCTCAACAAATAACTAAACCCACTCTGACATACAAGCACATTATCCAAATCTGCATTCTCACTCACTTGCATTTGgttaataatttcacatttttgtagtgagtgtttttttgtttttgttttttttaggtcTTTGTGTAAGGCAATTAAGTTTGATGCAGACTATGCTAGTATGGAGCTACTTAAAACGAGAATTCCAGTTTTCTGATGGAAAACCTGTTACTATTTTCAAATTCTCCTGCATTGTGTATGTCTTTCTACTTGCTTGTTTGGCTGTACAGCGGCATTTTGAAGTCCTGCAGTGATCCTGTTGCATTTTCACAGGTAGTGAAATAGGGGGCATATTCAGAgataatattgtataataatcaATTTATATAAGTTGCAGGGACCAAGCAACGGAAAATCAAGTAGGCTCTTGTTTATTCAAATTTGGCGCTTGTGTGAACAGGGAGTGTTATCTGACAGTCAATCCACCACAAGTAGCAATAATTATTACTGATCAGTTAAATGAAATGGGAGTTACTTGGGTTGGTTGTAGTGAATCTAATGCACTGGACAAGATATGTACCCATTTCTTATTGGCATAATCTGAGCTTTATATACTGTTTCTGCAAAAGGTGAAATCTTCAAACTGCTTTTTTGCAGAAGTGCAGCTCATATGCAGTGTGCTGAGGGTGGTGGGGTGGTTTGTTAAACCCAAAATGCACCTGGCAAAATGCTTTGGGCAAGAGCAAAAATAATGTCGATATGCCAGACAAAATGTTAAACCCTTTAAATGCCTCTGTACAACACAAAGGAATGCAGATACCTTATTTCAAGCAGAGCTCAGTATGAATCATGTTTAGGACAGGCAAATTAATTGACAAAATCACAGTTAAATTccaattaacattttctttctatatttcttaatgaatatgtaaattgttTCTGTCATCATTCGGATGCTTCATTCAACACACATCTCAAAAACACTTGTCCAAGTGGAATTTGAACCCCAGAACTTCTTGGAAATCGTAAATGTTTTTGGTGTGCATTGGGGTTATTTCGCGACCTGGGGAATTTGCCTCTCACATGAGTGTGCACTGTTCATTGTACAGGGTGATACAAAGTGACTTATTTTGTTGAAAGTGTTACTAAAGTATTACTAAAATATCGAATCCTCAGCCTTATGTGAGCAGtgtttaactgttttgttttggggacCACAAACAATCCACTCCACACATGGACCTCATTCCAAACCCCTGGTACTTCTACCTGCTTAAATACCATAAAACAGGTTAGCAACGGTTACCTCTACTATAATCAAGGGATTCCCAAAACGGTCCTGGTGGACCCgctttcctgtgtttttttttttttttttgttccaattgaggtctttattgcttaattgaatccttaattgaactaacaatgcaatataaggctcaattatTTAAGCTCGGTTGGAATAAAAACTGACAGGGCAGGGTTTTttccaggactggtttgggaaTCCCCACTCAAATTCATTTCCCTTCAGCTCAGTCCTGTAACCACAAATCAGTGGCACAATCTTTCCGTGCCGCTCCATGTCAAATGTCCTTCCTTTCTCTGTAACTACCCATGGAAAATAAtccatattcataataaaatactaggattttttttttttttttttttttgcataactGTGGGTATTTGGTGTTACATGTACGTGTTATCTGTTTAAGCTGTTATATTgggaaatatgtaaaataatgaaaacctaAAAAGGGATAATGAATGCACTGTTTAGAAGCAGGACCTGCTGGACCACGAAACAAAAGGGTGCATGTTTGAAAGTCTCTTGTAGCGAGCACCTTAGAGTAGCGAAGTTCAGACATGTCAATACCTCCACTTCGGACTTTTCTTGTGTACATTTGCACTACGGATTTATTTAACCCTTTCTTTACCGGTAGGACTCCTTTGTAACCCCTTGTTCTGCATAACTCCAAAGCTAAAGACAGCATACATAAAAATGggcaaacaaaaatgaacaaaatgaacaTCTGTGGATGTAAGGAAAGGGTTAAACCTCTGTAACGAGGACTTTAACGgagttctgttttttaaaaaacaaaa

Function

GO: NA

KEGG:

id description
K25192 RNF157; E3 ubiquitin-protein ligase RNF157

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013056 True 6284 mRNA 0.45 16 18406711 18433678

Neighbor

gene id symbol gene type direction distance location
AMCG00013057 NA coding upstream 10589 18388811 ~ 18396122 (+)
AMCG00013054 NA coding upstream 43824 18359555 ~ 18362887 (+)
AMCG00013052 NA coding upstream 55158 18332725 ~ 18351553 (+)
AMCG00013053 mfsd11,mfs11 coding upstream 125910 18266268 ~ 18280801 (+)
AMCG00013046 NA coding upstream 148379 18255445 ~ 18258332 (+)
AMCG00013061 NA coding downstream 6917 18440595 ~ 18444746 (+)
AMCG00013059 NA coding downstream 28913 18462591 ~ 18471589 (+)
AMCG00013060 NA coding downstream 45019 18478697 ~ 18504972 (+)
AMCG00013062 NA coding downstream 78894 18512572 ~ 18513860 (+)
AMCG00013058 NA coding downstream 119575 18553253 ~ 18559281 (+)
G41823 LOC107575789,LOC100846954 non-coding upstream 107797 18298625 ~ 18298914 (+)
G41822 NA non-coding upstream 110765 18295645 ~ 18295946 (+)
G41821 NA non-coding upstream 121856 18283628 ~ 18284855 (+)
G41818 srsf2,srsf2b,LOC105012916,LOC108430244,LOC106612293 non-coding upstream 141016 18261963 ~ 18265695 (+)
G41814 NA non-coding upstream 162568 18242783 ~ 18244143 (+)
G41908 NA non-coding downstream 226576 18660254 ~ 18660522 (+)
G41924 NA non-coding downstream 263142 18696820 ~ 18697632 (+)
G41990 NA non-coding downstream 633295 19066973 ~ 19068210 (+)
G42054 NA non-coding downstream 1152850 19586528 ~ 19586793 (+)
G42077 NA non-coding downstream 1552500 19986178 ~ 19987860 (+)
AMCG00013047 NA other upstream 176473 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 1677178 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 2615084 15782364 ~ 15791627 (+)
AMCG00012982 ssbp1,LOC106576077,LOC106609216 other upstream 2775708 15620735 ~ 15631003 (+)
AMCG00012978 NA other upstream 2833243 15570906 ~ 15573468 (+)
AMCG00013068 NA other downstream 533751 18967429 ~ 18974362 (+)
G41978 NA other downstream 591883 19025561 ~ 19029278 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 2835997 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 2852353 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other downstream 2937165 21370843 ~ 21421316 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000063_07493274_07509323 RNF157 coding CI01000063 null 7493012 ~ 7509323 (-)