AMCG00013065


Basic Information

Item Value
gene id AMCG00013065
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 18772625 ~ 18788291 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013065
TTCGTCGGCCACACAGAGCCCTACACCAAACTGTGCTGTAAAGGCTTCTGCATCGACATCCTGAAGAAGCTCTCCCGCACCATCAAGTTCTCCTACGACCTGTACCTGGTCACCAACGGCAAGCACGGCAAGAAGGTGCGCGGGATCTGGAATGGGATGATCGGAGAGGTGTTCTACAAGCGGGCTGACATGGCCATTGGTTCCCTGACCATTAATGAGGAGCGCTCAGAGATCATTGACTTCTCCGTGCCCTTCGTGGAGACCGGTATCAGTGTTATGGTGGCCAGAAGCAATGGCACCGTGTCACCTTCTGCCTTCCTAGAGCCATACAGTCCAGCTGTGTGGGTCATGATGTTTGTCATGTGCCTCACTGTGGTGGCCATAACTGTCTTTGTCTTCGAGTACTTCAGTCCCGTCGGCTACAACCGCAGTCTGATCAGTGCGAAAGACCCCGGTGGCCCCACTTTCACCATCGGCAAATCGGTGTGGCTGCTGTGGGGCATCGTCTTCAACAACTCAGTGCCCATTGAGAACCCCAAGGGCACCACCAGCAAGATCATGGTGCTGGTGTGGGCCTTCTTTGCCGTCATATTCCTGGCCAGCTACACCGCCAACCTGGCTGCCTTCATGATTCAAGAGCAGTACATCGACACCGTCTCCGGCCTCAGTGACAAGAAGTTCCAGAAGCCTCAAGAACAATACCCCCCCTTCCGCTTCGGCACCGTTCCCAACGgcagcacagagagaaacatACGCAGCAACTACCCCGACATGCACACCCACATGATCAAATACAACCAGCGAGGAGTGGAGGATGCTCTCAACAGCCTGAAAACAGGGAAGCTGGATGCCTTCATTTATGATGCAGCTGTGTTGAACTATATGGCGGGGAAGGATGAGGGCTGCAAGCTGGTGACCATTGGCAGTGGCAAAGTATTCGCCACCACCGGCTACGGTATAGCCCTGCAGAAGGAGTCAAGATGGAAGCGACCAATAGACCTGGCTCTGCTCCAGTTCCTGGGAGATGGAGATACCCAGAAGCTGCAGACAGTGTGGCTGACTGGGATCTGCCAGAACGAGAAGAACGAAGTGATGAGCAGCAAGCTGGACATCGACAACATGGCGGGGGTGTTCTACATGCTGCTGGTGGCCATGGGCCTGAGTCTGCTGGTGTTCGCCTGGGAGCACCTGCTATACTGGAAACTACGCCACTCTGTGCGCAAGTCTGACCGGCTGGACTTTCTGTTGGCTATCAGCAGGggcaTCTATAGCTGCTTCAATGGTGTTGAAGAGTCTGACCGGCCAATTAACATACAGAACCCTGACGTCACCACTAACTATGCCCAGGCCAACATGCTAAAAATGCTTCAGACCGCCAAGGACATTGTCTCCTCTGCCAAAGTGGAGAACTCCCTTGAGAATGCCACCAAAACCATTGAGAACTGGACCAGGCGCAGCGAGAACATCAAAGGAGGCATCTCCACCAGGGGGCCCCAGGTGGCCACCTCTGACATGGCGATGGGCCCGGGCCGCCTGCCTTACATTTCCAGTATCACAGACAACCACTCCCCCTTTTCCCAGCGAGCTCTGACGCCCACGCTCACCGTGCACTATGCTGAGAATGCCACCCAACCGCTGCTGGAGAAGCATAGAGGGGTGGCACGGCCCACACCAATCCGCTACACCCTCCCGGCACGGGGTAGCCAACTATATGACAAAACACTGCCCATTTCCAGCCTCAGCAGCCCCCAGATTGCAATGAGGGATCCCCTTCCGGCCACCAACCCTCACCACAGTAGCCGTCTCTATGTGGAGAACCAAGCCCGGCATCCCAGCTCTCCATTCATCCCCTACCGGGAGTTTCAGGTGCCGGACATCTATGTGGAGCACAAGGACCCCATGTGCCGGAAGCTGTGCACAGATGGTTTGGTGCGAAAGAAGAGGTCCCACAATTACCTTGTGGAGTCTCCAAAAAGCAGGCGGCGGCAGGAGTTCGAAGAGCCACCCACATGCTTCGCCGAGCTGCGAGCCAACCACCTAATGGAAAACCATGTCCCCACCGTCTCCTGCATCAACAACAACCACTACCCCCGGGCCAACCCCAGCTGCAACTCCTGCATCAAGCCCTACATGGAGCCGGAACCTGAGGACATCCCACTGCTGGGAAAGGAGAAGCTGAACCGCCGGGCCTCATTCATCAAGGCCACATGGGGGAGTGAGAGGATCAGGCCACTGGATGAGAAACCCAGCACTTCCTCTTCCACCAGGATAGACATGCCGGACTTGTTCCCCCGTGTGGTGGCCAACCCCAGACCCAAGCTGTATGGTACCACGGGCAACAGCCTGTGTTACCCCATGGCGGTGGAGCACGCCTACCTGAACCCCGGTCCAAGTCACCCCTACAAAGGGCAGAAGCTGAAGTACTCGCAGTCGACCCGTCTGCCCTCATACAGGGAGGCCGTCCTACAGAATGCCGCCGCCCTACGTAGATCTTCAACTGTGGTCCACAGACACTACTCCACCTACCTGAACTCTTACACCGACCTGCCGGTGTATGTAGGGCCCCTGGCGCAGGGCCCCGCACAGTTTTACGAACACTCCAAGGAGATGTGCAACATATTCCCTTGTGTGGACCGGTCCCCGGAGGAGAATGCCCTGGTGCCCAGATTAAGTGACCGACAGCTCCTCTACCAGGACAATATTTACGGGGGTTACGGAAGCAGCCGGGTCAGAGAAGAGTCCCACGTGCCCGGGCCGAGTGCCAGAGACAGGAGGCAGGTTCTCGTGGCTCGCAGAGTGAACAGTCCCTACGTGCCAAAGCCATGGGGCAGGATTTCTAGTCTGGAATCAGAGGTC

Function

GO:

id name namespace
GO:0035235 ionotropic glutamate receptor signaling pathway biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0045211 postsynaptic membrane cellular_component
GO:0030054 cell junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005234 extracellularly glutamate-gated ion channel activity molecular_function
GO:0004970 ionotropic glutamate receptor activity molecular_function

KEGG:

id description
K05211 GRIN2C; glutamate receptor ionotropic, NMDA 2C

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013065 True 2856 mRNA 0.57 8 18772625 18788291

Neighbor

gene id symbol gene type direction distance location
AMCG00013063 NA coding downstream 207682 18558948 ~ 18564943 (-)
AMCG00013055 NA coding downstream 479313 18292170 ~ 18293312 (-)
AMCG00013050 srsf2,srsf2b,LOC105012916,LOC108430244 coding downstream 507127 18265139 ~ 18265498 (-)
AMCG00013048 jmjd6,LOC107654591 coding downstream 517276 18244195 ~ 18255349 (-)
AMCG00013049 NA coding downstream 533470 18194012 ~ 18239155 (-)
AMCG00013066 grin2c,LOC105022923 coding upstream 16721 18805012 ~ 18820165 (-)
AMCG00013067 NA coding upstream 130273 18918564 ~ 18926388 (-)
AMCG00013072 NA coding upstream 175568 18963859 ~ 18964335 (-)
AMCG00013069 NA coding upstream 237281 19025572 ~ 19046046 (-)
AMCG00013075 LOC106589445 coding upstream 292445 19080736 ~ 19209004 (-)
G41925 NA non-coding downstream 75018 18696820 ~ 18697607 (-)
G41922 NA non-coding downstream 112103 18660254 ~ 18660522 (-)
G41875 NA non-coding downstream 338908 18429054 ~ 18433717 (-)
G41858 NA non-coding downstream 386419 18331810 ~ 18386206 (-)
G41851 NA non-coding downstream 476679 18295645 ~ 18295946 (-)
G42056 NA non-coding upstream 896145 19684436 ~ 19684658 (-)
G42058 NA non-coding upstream 988233 19776524 ~ 19776729 (-)
G42078 NA non-coding upstream 1197952 19986243 ~ 19987735 (-)
G42136 NA non-coding upstream 1613417 20401708 ~ 20405085 (-)
G42242 NA non-coding upstream 1878054 20666345 ~ 20674228 (-)
AMCG00013051 NA other downstream 507782 18258089 ~ 18264843 (-)
G41836 NA other downstream 528532 18242750 ~ 18244093 (-)
G41807 NA other downstream 581103 18176061 ~ 18191522 (-)
AMCG00013042 NA other downstream 725911 17929898 ~ 18046714 (-)
AMCG00013038 NA other downstream 862608 17880225 ~ 17910017 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other upstream 188769 18977060 ~ 19022778 (-)
AMCG00013070 NA other upstream 279954 19068245 ~ 19071418 (-)
G42076 NA other upstream 1192045 19980336 ~ 19982880 (-)
AMCG00013090 NA other upstream 1742903 20531194 ~ 20545811 (-)
G42366 myhz2,LOC106598369,LOC104955241 other upstream 2463816 21252107 ~ 21301421 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005445 grin2cb coding NC_007123.7 CM002896.2 31909346 ~ 32013125 (-)
grasscarp (Ctenopharyngodon idella) CI01000034_04548660_04597274 GRIN2C coding CI01000034 null 4548587 ~ 4597396 (+)