AMCG00013069


Basic Information

Item Value
gene id AMCG00013069
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19025572 ~ 19046046 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013069
GAAAAAGATGGTGGCCAGCGCGAGGGTGCGGAAACTGCTCCGCCGCTACAAACTGGCGATCGCCGCCGCGCTGGCAATCCTGCTCGTCCAGGGGCTGGTGGTGTGGAGCCTCAGGAGCCTGGAGGAAGGGGATAAGGTGGAGAGTAATCGGAGGAAATCTGTGCTGCCAGACAACAGTAAAAACCGCGAGAAGGAGAATCAGAACAACCCCTCTGGCAGGAACCAGAGCCCATGGAAGGCGGGCGGGAAAGGCGCCCAGAAACGCAAGCCCACCACCCGCGACGGGGGCTCCCTGGGGCAAGCAGGCGCGGCCGAAGGGGTGCCCTACGACCCGTCCAGCAGCCGCAATTTCACTGACCTCAAGGGGGAGGGGCGTTTTCTGACGGCACAGCACGGAGACACGGGCAGCGTGGAGGGTGCCCCCCAGGCCTCCAGCAGTGACTTCCTGCCCAAGTGTGACATCGCAGGCAAGGACGCCCTATCCGCCCTGAGCCGCGCCAGCTCCCGCCAGTGCCGCCAGGAGATCGCCAACATAGTGTGCCTGCACCAAGCTGGTCAGCTGATGCCCCAATCTTTGCCCCAGTTCTGCCCGCAGTACGGCCTGTCCAGCCCCATGGTGCAGTGGGAGGACGACGACACAGACCTGTCCAAGGTGGACAACCCAGTCAGGGTGGCCTTCGTCTTGGTGGTCCATGGCCGCTCAATCCGACAGCTGAATCGTCTCATCAAGGCCATTTATCACCAAGATCACTTCTACTATATCCATGTTGACAAGAGGTCTAACTACCTGCATCGGGAAGTGCAACAGATTGCCCAACAGTACCCCAACGTCCGTGTGACCCCCTGGCGCATGGTCACCATCTGGGGAGGAGCCAGCCTGCTGAAGACCTACCTCCGCAGTATGCAGGACCTTCTGAGTATGGTTGACTGGAAGTGGGATTTCTTCATCAACCTGAGCGCCACGGACTTCCCCACCAGGACCAATGAAGAGCTGGTGGCTTTCCTGTCTAAATACAGAGATAAGAACTTCCTGAAGTCTCACGGTCGGGAAAATGCAAGGTTCATAAAGAAGCAGGGTCTGGACCGCCTGTTCCACGAGTGCGACACCCACATGTGGCGGCTGGGCGAGAGGCAGATCCCCCAGGGGCTGGAGGTGTCCGGGGGCTCCGACTGGTTCGCTCTGACGCGCAACTTCGTGGAGTACGTCATTAACTCCCAGGACCAGTTGGTGTCCGGCCTCAAGCAGTTTTACACTTATGCCCTCCTGCCTGCAGAGTCCTTCTACCACACGGTGCTGGGCAACAGCCGCATGTGTGACACTCTAGTGGACAACAACCTGCGCGTCACCAACTGGAACCGCAAGCTGGGCTGCAAGTGCCAGTACAAGCACATCGTGGACTGGTGCGGCTGCTCCCCCAACGACTTCAAGCCAGCAGACCTCATTCGCATCCAGCAACTGACCAGACCCACTTTCTTTGCCCGGAAGTTCGAGTCCATTGTGAGCCAGGAAGCCATTGACATCCTGGACACACACCTGTATGGGCACTACCCCCCCGGCACGCCGGCCCTCAAAGCCTACTGGGAGAGCGTGTTCGACAAGGTGGACGGAGTGAGCTCCCTGAGTGACGTGGCCCTCACTTCCTACTCCTCTTTCTTCAGGCTGGGTCTGCGCAGCTTGGGCTCCTCTCACAGTAGCAACGACAAGTGCAGGTATGAGCCAATCGGGTACCCGGTCTCGGTCCACGTGTATTTCTATGATGACCGCTTCCAGGGTCACCTTGTGATGCAGGAAGTGCAACACGTGGGGACGGGAGAGCGGGAGACCCTGGAGGTGTGGGCAGTGTCACAGTCTACCCTGCAGCTAGAGAGCAACCTGCAGGAGTTTGAGAGACTAAAAAACCTGGAGGTGGGGACAGATTGGGACCCAAAGGAGAGGATCTTCCGCAATTTCGGTGGAGTGATCGGGCCCCTGGACGAGCCGGTCGCCGTGCAGAAGTGGGCGCGGGGTCCCAACCTCACGGCCACCATCGTGTGGATCGACCCGGCCAAAGTAGTGGCCACCTCCTACGACATCAGCGTGGACATGGAGGCCGAGTACACGCAGTACAAACCACCCCTGCAGCATCCCCTGCGCCCAGGGGCCTGGACAGTGCGCGTGCTGCGGATGTGGGAGCCCGTGGCCGAGACCCGCTTCCTGGTCACGCCCCTCGCCTACAAGGACCGACAACCACTGCGCAAAGAAGAGGACCGCTGGGTGCACTCCGGGCCCCCTGGCAACCAGTACATGGAGCAGAGCTTCCACAAGCTGCGCCAGGTCCTGAAGCTGCCCAGCGGCGACTCGGCCATGGAGCAGGCCCGGCGCCACGCCCTGCTGCAGGGCAGGGCCCTGGAGGACTGGGTGGACGACAGCATTGGAGCCTTCTGGGTGACGGGCGACGTCTGCTCCACCGCCACCTCGCCCTGCGCCTCCCTGACACTCTGCCCCAAGTCCAGCTGGAGCTCCCTGTCGCCCGACCCCAAAGCCGAACTGGGCCCAGTCAAAAGCAATGGCCGCATCAGGTAGCACCTGTGCCCCCCCCGAGTCTGTGCAAAAACACAGGGGAGACGACGGAGCCACTTTCAAGTCATGCGAATATGGACTGGGGCCAGGGCAGGACTGTTCTGGGGAAGTTCTGTTGCATGGGCAAAAGTGGAGAGGATTTTGAGAGACTGGGGCCGACAGAGTTTCGGGCAATGTGGTTACCAAAGCCCCCATCAAGAAAGCTGGGAAAGATTTTGAatttttgcacacaaaaaaaacatttattttgtatatatatatttctaagtTATGTTTTTggttcttcatttttttttattttttttttggcacatcTTACAATCAAGTTAGAATTTGAGGCCTTCACGTTTGAACTGCAAAaggaattatttgttttctaacaCTTTTTATGAAATATGACAAAAGTCTGCTCACGACTTTTGTTTCGGCCATGAGCAGAAGAAAGATGGTCAAAACCGGACCCCAGAGTtcccttcattttatttgtatttgtttacatgaggtatttttgtttttattttggttgtgcTTGTTTACGTTATCAGTTATTTCCAAAAGCATTAGCAGAACTTCAGAAATGGACGGCATGAAGTGCACTTTACTGGAAGAAAATGCTGGAGGTCGGCCTCTGCGTAACCGCTGGAAATCAAGattggtgggggggagggggagcttCCATAGAGAGGTCATGGATGGCGGTTTCCTTGGAGCGAAGGCCTCGCTCTTTAGGTTTGCATCAAAGTGCTGCTAAAAACTCTCCAGTGCTGTTCGGAGCACTGACTACATGGAACTGAAGACCACAATCACAACTGAAGCCCCGCTGTGGACAGCTGAAAGTGGAGTTGTTGGGATGCACACGGCAGTCTCTCTGATGTGCGGCAAGAGAGATGGAAGACAGCTCTGGGACTGGAGATGGGAAACACAGCTCTCGCATAGCACTAGCTCATAAGTTATTCAAAGACTATTCCTCAtcctctgttttttctttttctgtcagCCTTCAGTAGGAATGCAACCAATTGAAATTCAGTCTTTTAGCATTGTATCGCAGAGGAAGTGCCTACAGTTGCAGTAGAGTAGAAGTGCTAGCCAACTCTTTATTGACGAAAGGCCAGTTGGTTTGATTTGTGCGGCAGTGGTCTGTTCTCTATATCACTTTCCCACTTTCATGGCAGCCTTTTATCTTACCACGCATCCCAAAAACCTAGCCCATCAGGGCTAGTGTTGGAGATTAGGTGGCATCTTATTGCAAATGACTAATATCAACTGTGTGACTTCACTCGTCATAACTGGATGTGAAATCcttgttttctgaaataatacGACAGTTGCATATCTAGTGCTATTGCGACCTGACAGAAATACTAAACATAGAGTGGTTTATTCCACCAGCCCATAACTTATTTTGCTTTGTGAGAAGGGAGTCCCTTGATTTAATGTGGCTTAATGGGTGTGGAAttgaatttgcatttgtgtataGACAGTACTTTGTTGTGGTCAACAGGAAGAAATATTTCACCGGCTCACCATTTTCACTAATCCCTTAATATTGAAACAGTTTATGTAGCCAAGACTGATAACGTGTAATTCTGGTCGGCACATTTATAATTGTCCTCAAATCTGAACAACTGTTAAAACGTGATTCCCGTGATGAAATATTTTCCCCTCATCTAAATAGTTATTGTCATTAGAGATTTCACTGTTAATCttgataaaaaaacatattttttccattggaGCAAATGAAGAGCCCCAGTGAAATACTGTTCATAGAATTTTCTTTCCCAAAATATTCCCAGAAAGTTGTAATCATTCATATTCTTTCTAGAAACTGGCAAGAAATGTTAAATGAATGAGATCACCTTATCCTTGTGTATCCTGAATCTTGCCTTGAATTAAAGTGGCCTTTTTCTCCACATAAGCCACATAAATGACTAATGGAGCCATAAAAAAATAGGCATAATGATTGCGTTGACGAGGGGACaaaattgaagaaaacaaatgtatatgtatttatatttttatatttttatctgaGAGCAACAGTGTTTCTCTAATTTAAGATCATTCTTCCAATTTGGGCCTCTTTATTTCACAGTGACCCTACTATCAGATTGTGTCTATTCCTGCGTATCTCCCACTACATTTAAAACTTGCTTCCAAAGCGGTGATGTGGGTATATCTGGCTTGGGAATTTTCTGGACTTTAAATCACATCATTACAGAAAGCTCCAGGTACTTtggcattaaaataaaccattactttttctttcactgatttcacagatcaaatacagtacataaataaGCTTTCTAAATGTTCTGTAATCTAACTCTGGGGGAATGTATGAGATGGTAAACCACCAGTGCATATTGACATTGGCTGTTCACTTCTGTGTTCTGAACTTTTAGGACCCGTTCAAGTATAAGCTCTGGAAGATGCAATATGCACTTTTGCCTGCAAAGCATACAATCACTTGCACATCTTGCATCATACCAACACGTACAGAACAGAAAATCTCCAGGTCCTTGACACCCAAAAGGCAAGATTTCACTGTAATCCAGTACAAATACAGAACCTGTAGGTTTCAGTTTTAAACTAGGTATGAATTTTATTGTTGAGCAGATTGCCAGATATTATTAGGAATGGAAATGAAAAGACTAAGAAAGCGATACAAAATGTGTTACCTCAATGTGGTTCTATGAAGGATGAGTTCTGTACGGTCTTTATCTGTATACAATTCTGTCCTAACTGGGTGAAATTCATTTTTCTGGGGTGGTATCCTTTTTTCTTTACGCAGTGGAGATGGATGAAACTTGATGGTCCAGAAGTCCCACTTAGTGTTAATCTAAACACAAGAGTCTTGACTGATTTTAATTTGACGGCCATGTTCTAACCAGCGCCTTAATGATTTGACTCCTGGCTCATCGGTTCAGGTCAGTAGTAGAACATGGGAATAGACGGCCATGTCGTGTGGTCAGTCTGTTTTGGTTCTGCGCTAACAATAAGATCTTTTAACTGGTCCAGCTATGATACCTAGATTACATTAAGGAGCGAGACAAACTGAGCCCAATCCAGTTGGTCAGACTCTGTCCTCCAGTATTTGTCATGCATTTCAGAGTTGGGACTTGTCGAGGTTCATCCGTCTTCAGAGCTGACAACTCAACTACCTGTGAAACACAGTCCAGTACATCTTTACAAAACCCACACCTCACTGTGTGATTTACTTGTTATGTATGAGCTGTGAACATGCTGCAAAGCTCTTACTGTTACATTTGTTCTATGCCAGTGTTATGACTTTGTTGTAAATGCCCTTTGAGCCTTAATACTGGAGTGTGAGGAAAGGCAGTTCATCAATGAAGCCCTTCAGTAAAGACGTTTTTGCGCCATGTCTGGTTGACTGATGGG

Function

GO: NA

KEGG:

id description
K00771 XYLT; protein xylosyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013069 True 5968 mRNA 0.49 11 19025572 19046046

Neighbor

gene id symbol gene type direction distance location
AMCG00013072 NA coding downstream 61237 18963859 ~ 18964335 (-)
AMCG00013067 NA coding downstream 99184 18918564 ~ 18926388 (-)
AMCG00013066 grin2c,LOC105022923 coding downstream 205407 18805012 ~ 18820165 (-)
AMCG00013065 NA coding downstream 237281 18772625 ~ 18788291 (-)
AMCG00013063 NA coding downstream 460629 18558948 ~ 18564943 (-)
AMCG00013075 LOC106589445 coding upstream 34690 19080736 ~ 19209004 (-)
AMCG00013078 NA coding upstream 165797 19211843 ~ 19390121 (-)
AMCG00013077 NA coding upstream 917484 19963530 ~ 19978155 (-)
AMCG00013080 LOC107684067,LOC106607505,LOC107565795,LOC107702488,LOC106600809 coding upstream 942815 19988861 ~ 20005821 (-)
AMCG00013083 NA coding upstream 1323100 20369146 ~ 20372204 (-)
G41925 NA non-coding downstream 327965 18696820 ~ 18697607 (-)
G41922 NA non-coding downstream 365050 18660254 ~ 18660522 (-)
G41875 NA non-coding downstream 591855 18429054 ~ 18433717 (-)
G41858 NA non-coding downstream 639366 18331810 ~ 18386206 (-)
G41851 NA non-coding downstream 729626 18295645 ~ 18295946 (-)
G42056 NA non-coding upstream 638390 19684436 ~ 19684658 (-)
G42058 NA non-coding upstream 730478 19776524 ~ 19776729 (-)
G42078 NA non-coding upstream 940197 19986243 ~ 19987735 (-)
G42136 NA non-coding upstream 1355662 20401708 ~ 20405085 (-)
G42242 NA non-coding upstream 1620299 20666345 ~ 20674228 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other downstream 2794 18977060 ~ 19022778 (-)
AMCG00013051 NA other downstream 760729 18258089 ~ 18264843 (-)
G41836 NA other downstream 781479 18242750 ~ 18244093 (-)
G41807 NA other downstream 834050 18176061 ~ 18191522 (-)
AMCG00013042 NA other downstream 978858 17929898 ~ 18046714 (-)
AMCG00013070 NA other upstream 22199 19068245 ~ 19071418 (-)
G42076 NA other upstream 934290 19980336 ~ 19982880 (-)
AMCG00013090 NA other upstream 1485148 20531194 ~ 20545811 (-)
G42366 myhz2,LOC106598369,LOC104955241 other upstream 2206061 21252107 ~ 21301421 (-)
AMCG00013112 myhb,LOC106527115,LOC107667337,LOC107721187,LOC108440470 other upstream 2254047 21300093 ~ 21311306 (-)

Expression


Co-expression Network