AMCG00013070


Basic Information

Item Value
gene id AMCG00013070
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19068245 ~ 19071418 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013070
cttgtttttgaaatccAGATCGGGCAAGTACAATAATAATCTCtattgtgtttagttttttgtgatCCTTTAATTGCAATTTGAAATCAGCATGGATGCAAAGCTCACGTCgatgtgatttgtatttgttttatcctACATGAGACTTCATACAACATGTGCACGTTGCCCTCTACGATTTTATGATAACTGACTGCTGCTTTCGTGCCAGCCCTTTGCCACACCTGCAAGATGTGCATCCAAAAAGGCTGGCGGTACCTCGAAAAACAGCGGAGGAAAAAGTGCTGGTCGCAGATATGGATTCAAGAAACAAGAAGGTTGGAATTGGTCGCAACAACACTCTGTATGCGCTGGAAGATGGCACTGTCAGGTTCACCAAGGAGGTCTTCATTCCCCCGCCTCGCAGTGTTCAGGCCAGAAATGTGATCTGCAGACTGCCCAAAGGGACTCTGCTCTACAAGACATTCATCAACGTTATCCCTCCCAAACAGGAGGGCATATTTAAACTTGTGGGCATGTTGTGATGCCCTCTTCTGCCCCTCCGTTTCTCTGTCTGGCACATTCTGAACTCCATAGAAAGACTTGCAGGCCCTGAGTTGATGATGTCGAATGAGTCTTTCCACTGCCCACCTATTCCAAATTAATAAGGaggatgtatattaaaaaatcagGTATACATTCATTATCCAGATACATTTCCTTTctcagttgtatttatttatgtatgaaacACACTATAGATATATGCATGATACAATTTACTTGAATTGTCTAATAAACCTGTTTGTTACAGTCTCAACTGATGTCATCTAAATGCTCGTGCTGCATTGATATTGTTCAGCTTTTTTGGCTAAGCATATAACGTCCGGACAGAGacttcatatttaatatgtatattaattaaatatacctTTTTCCAATATAGCACTTCATCAGAGGAGGACTTTTTCCAACTTTATATTCTTAAgtaccagtttttttttcccctggtttgcagtcataaataaataattattctaaaGATTCAGTGAGTTTCATAAACTGTCCATATTAAGTTCTAAAATAATCTTGTGTAAAATTCCA
>TU52331
AAAGGTCGAAGTTCACAGAATCTTCAAAGATGGCGGCGCTCAcgtccttgtttttgaaatccAGATCGGGACTGCTGCTTTCGTGCCAGCCCTTTGCCACACCTGCAAGATGTGCATCCAAAAAGGCTGGCGGTACCTCGAAAAACAGCGGAGGAAAAAGTGCTGGTCGCAGATATGGATTCAAGAAACAAGAAGggaATGTTGTTCATGCTGGAAACATCTTGGCAACACAGCGTGTAATGCGCTGGCAACCAGGAGCAAATGTTGGAATTGGTCGCAACAACACTCTGTATGCGCTGGAAGATGGCACTGTCAGGTTCACCAAGGAGGTCTTCATTCCCCCGCCTCGCAGTGTTCAGGCCAGAAATGTGATCTGCAGACTGCCCAAAGGGACTCTGCTCTACAAGACATTCATCAACGTTATCCCTCCCAAACAGGAGGGCATATTTAAACTTGTGGGCATGTTGTGATGCCCTCTTCTGCCCCTCCGTTTCTCTGTCTGGCACATTCTGAACTCCATAGAAAGACTTGCAGGCCCTGAGTTGATGATGTCGAATGAGTCTTTCCACTGCCCACCTATTCCAAATTAATAAGGaggatgtatattaaaaaatcagGTATACATTCATTATCCAGATACATTTCCTTTctcagttgtatttatttatgtatgaaacACACTATAGATATATGCATGATACAATTTACTTGAATTGTCTAATAAACCTGTTTGTTACAGTCTCAACTGATGTCATCTAAATGCTCGTGCTGCATTGATATTGTTCAGCTTTTTTGGCTAAGCATATAACGTCCGGACAGAGacttcatatttaatatgtatattaattaaatatacctTTTTCCAATATAGCACTTCATCAGAGGAGGACTTTTTCCAACTTTATATTCTTAAgtaccagtttttttttcccctggtttgcagtcataaataaataattattctaaaGATTCAGTGAGTTTCATAAACTGTCCATATTAAGTTCTAAAATAATCTTGTGTAAAATTCCAGCAGAAATCTTATTTctgattaagaaattaaataaacatttaatttgaaaatgtttattaataattttgcatttattatgatCCATGTATTGTATAAGAATGTGAGttggtatttaattcaaaatcatGCTTGAATAGGTCTAATTAGTCACATTGAATTgtctaattttatttaaaaatatctgaatCTTACAATGTAACATCTCAGTGGCCTGATTAGGACAACTTCAAGGAAAATTGTCCACTGTTGCAAATGACCAGCCTGATTGCCCATGATGTTGATTTACAcggtgatgtaatttgtttttttgtttctttaatccTCAATCTAATCAAGTGCACAGTGCACAGAGACGTCCTCGCTCGTTTAAAAATGTTGATGTCTAAAGCTTCAATTGCTTCAGTACCCATGAAGTTACAGGTTCGTCTTCCCTTTCGTATGTAGATTTTAGCTGTTCCCAGAGTTTTTGTCTTGTGCAGTTccaattataatttgtattaagcCCCCTGCATTTTATTCTTTAGAGAAATTAAGCTTTGCGGTATGAAACGGCCTGCTAAGTCTTTGTTCTAAAATGTCTTTTACACCCTCCTGTGCAGAGTGTAGGGTCCCAGTGCATCTTGGGAATTCTGGAAACTTGCCTTTCAAGATTGGAAAGTCATGACAAAGAGAGGGTAGGAAAGTGTTTTAAGAAAGTGAAGTAAAAACCACTGCAGTTATCATGAAAGATTCCTGGATATTTATCCCAGAAGGAGTCTAGGAACCTTGACAACGGCACTAGTGTTGGGAGATCTTTTGAACAGAGAATCTGTACTGCTGTAGTAGAAATTATACTATCAGAGCTTACTCTTAGAACAAGCTCATTCACTCCAACTGAGTAAACGAATCAATCTAGGCTTACAAACCATTGATCTCTCATGTGGAAaggattgtttttgtgtgagtgagag

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component

KEGG:

id description
ko03010 Ribosome
ko04714 Thermogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013070 False 1083 mRNA 0.39 3 19069196 19071372
TU52331 True 1980 TUCP 0.38 4 19068245 19071418

Neighbor

gene id symbol gene type direction distance location
AMCG00013069 NA coding downstream 22199 19025572 ~ 19046046 (-)
AMCG00013072 NA coding downstream 103910 18963859 ~ 18964335 (-)
AMCG00013067 NA coding downstream 141857 18918564 ~ 18926388 (-)
AMCG00013066 grin2c,LOC105022923 coding downstream 248080 18805012 ~ 18820165 (-)
AMCG00013065 NA coding downstream 279954 18772625 ~ 18788291 (-)
AMCG00013075 LOC106589445 coding upstream 9318 19080736 ~ 19209004 (-)
AMCG00013078 NA coding upstream 140425 19211843 ~ 19390121 (-)
AMCG00013077 NA coding upstream 892112 19963530 ~ 19978155 (-)
AMCG00013080 LOC107684067,LOC106607505,LOC107565795,LOC107702488,LOC106600809 coding upstream 917443 19988861 ~ 20005821 (-)
AMCG00013083 NA coding upstream 1297728 20369146 ~ 20372204 (-)
G41925 NA non-coding downstream 370638 18696820 ~ 18697607 (-)
G41922 NA non-coding downstream 407723 18660254 ~ 18660522 (-)
G41875 NA non-coding downstream 634528 18429054 ~ 18433717 (-)
G41858 NA non-coding downstream 682039 18331810 ~ 18386206 (-)
G41851 NA non-coding downstream 772299 18295645 ~ 18295946 (-)
G42056 NA non-coding upstream 613018 19684436 ~ 19684658 (-)
G42058 NA non-coding upstream 705106 19776524 ~ 19776729 (-)
G42078 NA non-coding upstream 914825 19986243 ~ 19987735 (-)
G42136 NA non-coding upstream 1330290 20401708 ~ 20405085 (-)
G42242 NA non-coding upstream 1594927 20666345 ~ 20674228 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other downstream 45467 18977060 ~ 19022778 (-)
AMCG00013051 NA other downstream 803402 18258089 ~ 18264843 (-)
G41836 NA other downstream 824152 18242750 ~ 18244093 (-)
G41807 NA other downstream 876723 18176061 ~ 18191522 (-)
AMCG00013042 NA other downstream 1021531 17929898 ~ 18046714 (-)
G42076 NA other upstream 908918 19980336 ~ 19982880 (-)
AMCG00013090 NA other upstream 1459776 20531194 ~ 20545811 (-)
G42366 myhz2,LOC106598369,LOC104955241 other upstream 2180689 21252107 ~ 21301421 (-)
AMCG00013112 myhb,LOC106527115,LOC107667337,LOC107721187,LOC108440470 other upstream 2228675 21300093 ~ 21311306 (-)
G42371 myhc4,LOC108412647,LOC107723326,LOC108415768,LOC105910910 other upstream 2264799 21336217 ~ 21517177 (-)

Expression


Co-expression Network