AMCG00013077


Basic Information

Item Value
gene id AMCG00013077
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 19963530 ~ 19978155 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013077
GTGAAATGTCACTAAAATAGTCTACATTTTCACAAACTATTTTCTAAAGTAATGCAttatgatatatgtattttacaactTTCATCGGTAATTTtactcccccacacacacggAATGGCCATCAGAGTTGAAAGGTTACGTTACCGGAAGTTCGTATTTTCTCCATGTGGGGGAAATGTGTTTGCGTTTCATGTGTGTTAACAACACGTTTTGTGCAATTTAACGCTATTAAAATCGATTTTCACTAGTAGTACAACATTCgcttttaacattgttttaggACTTTACGTGGAATATTGGGTTGAGAAGCTACTAGTGCCAAATCCCAGTTAGTTTGAGGCAGTTGGTCTCTCGATCTTTTCGATTTCTCAGTATTTCactaaaactgttttaattagtattattgaaacatatttaataGTATGGATAAGACCGACAAGAAATCCCCGAAAGCGAAGAAAAGGACAGTGGACCTTAACAGCCCCGAGGCAGAAGGCGGTCAGTTTCGACGAGAAGAAGCCAAAAGACTGAAGCACCTCCGCAGGGTGACCGTCCTGGGCGAGAAGGAGGAGGCCGAGAAGTTGCTGGAGGAGCTGGTTTTCGGTGCCGAGGACGACCTGGTGGAGAAACTCAAAGGGACAGCGGAGACAGGTACTGCTGTGAGTGGTAACCTGCTGGATGATGACTCCAGCGATTCGGAGGTGGAGAATGAAGCCCGGCTGCAAGTCAGACCTCCTCGGAAGGCAGCCTGGGAGGATGAGGATGACCAACTGGAGGAAGATGTGGACATGACTCACAGGTTCCGGAGAGAGTTTGTAAAGAGCGACGCGGAGAAGAAGCTTCCAAAGCAGAAGCTGCAACAGAGGCTGAGAGACCAATTCCAGCGAGCTATGGGAGGCACACCATCATGGGCAGAGAAAAGcttgaaaaagaagaaagataaGAAACGTGGAAAAGATGttgacagtcaagatgatgatgatgatgatgatgatgaagacaATCTAATGCACAAGACTGGCAACTTTGTAGCCTCTTCAGAGTCTCTCCCTAAAGGAATCATACAGATGAAGAACTGCTTGAATGCCAACAATGACCGGACGTCAGATGCCAGGCTGACGACGGTTCAGTTCCATCCCTCAGCCCAGGTTGTGATGACGGCAGGAGTAGATCAGTCCATTTCCATCTTCCAGGTTGACGGGAAGACCAACCCCAAGATCCAGAGTATTCATTTGGAGCGGTTTCCAGTCCACAAAGCCCGCTTCAGCGCAGATGGAGAACAGGTCATTGCCACCAGTTTTCACAACAGGCTCTTCTACGTTTATGACATGATGGCGGGGAAAGTAATCCCTGTATACAAAGTCAGAGGTCTAGATGAGAGAAAAGTGAAAGAATTTGAAGTGTCTCCAGATGGTTCATTTCTGCTGCTAACTGGGACCTCGGGCTATCTCCATTTACTGACCATGAAGACAAAGGAACTGGTGCGGAGTATGAAGATAAATGGGGATGTTGCTGGAGCTGTGTTTTCCCCTGATGGCAGCAAAGTCTACACCAGTTCTGATGAAGGAGAGGTGTTCATTTGGGATGTTAAGAGCAGCAAATGTGTACACAAGTTCATGGATGATGGCTGCATCAAAGGAACATGTATAGCAGTGTCTAGAAATGGACAGTATCTAGCTTGTGGCTCCAACTCCGGGGTGGTGAACATCTACTCGCAAGAAGGTTTCTTTAAGGAATCAAATCCCAAACCAGTTAAAGCCTTAATGAATCTGGTGACGTCAGCCACTTCACTGTCCTTTAACCCCACCACAGAAATACTAGCCATAGCGTCCAGTTTAGAAGATGAGGCCATCAAACTGgttCACATACCCAGCTTCACTGTCTTTTCTAACTTCCCTGTGTTCCGGAGGAAGACCGTTTTCCTGCCACAGTGTATGGACTTCTCTCCGAGGAGCGGCTTTTTCTCTGTGGCAAACAATAAAGGCAGAGCACTTTTGTACAGGCTAAAACATTATCCAGACTTTTGAAGACATTCTATGTTTTTCTGCATATTGCGCAGATTTCTCGCCACACTCGATTGGGTTATTTGCCCTTTGTTTTCGCTCCAATCCTCTGTGATGGTTTGTattactaataaaacatttt

Function

GO: NA

KEGG:

id description
K14553 UTP18; U3 small nucleolar RNA-associated protein 18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013077 True 2145 mRNA 0.45 14 19963530 19978155

Neighbor

gene id symbol gene type direction distance location
AMCG00013078 NA coding downstream 573409 19211843 ~ 19390121 (-)
AMCG00013075 LOC106589445 coding downstream 754526 19080736 ~ 19209004 (-)
AMCG00013069 NA coding downstream 917484 19025572 ~ 19046046 (-)
AMCG00013072 NA coding downstream 999195 18963859 ~ 18964335 (-)
AMCG00013067 NA coding downstream 1037142 18918564 ~ 18926388 (-)
AMCG00013080 LOC107684067,LOC106607505,LOC107565795,LOC107702488,LOC106600809 coding upstream 10706 19988861 ~ 20005821 (-)
AMCG00013083 NA coding upstream 390991 20369146 ~ 20372204 (-)
AMCG00013085 NA coding upstream 415499 20393654 ~ 20397861 (-)
AMCG00013084 NA coding upstream 428402 20406557 ~ 20445394 (-)
AMCG00013095 NA coding upstream 572712 20550867 ~ 20578477 (-)
G42058 NA non-coding downstream 186801 19776524 ~ 19776729 (-)
G42056 NA non-coding downstream 278872 19684436 ~ 19684658 (-)
G41925 NA non-coding downstream 1265923 18696820 ~ 18697607 (-)
G41922 NA non-coding downstream 1303008 18660254 ~ 18660522 (-)
G41875 NA non-coding downstream 1529813 18429054 ~ 18433717 (-)
G42078 NA non-coding upstream 8088 19986243 ~ 19987735 (-)
G42136 NA non-coding upstream 423553 20401708 ~ 20405085 (-)
G42242 NA non-coding upstream 688190 20666345 ~ 20674228 (-)
G42278 NA non-coding upstream 911528 20889683 ~ 20890288 (-)
G42376 myhz1.2,myhz1.1,LOC108415768,LOC102780693,LOC105899468 non-coding upstream 1215994 21194149 ~ 21195350 (-)
AMCG00013070 NA other downstream 892112 19068245 ~ 19071418 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other downstream 940752 18977060 ~ 19022778 (-)
AMCG00013051 NA other downstream 1698687 18258089 ~ 18264843 (-)
G41836 NA other downstream 1719437 18242750 ~ 18244093 (-)
G41807 NA other downstream 1772008 18176061 ~ 18191522 (-)
G42076 NA other upstream 2181 19980336 ~ 19982880 (-)
AMCG00013090 NA other upstream 553039 20531194 ~ 20545811 (-)
G42366 myhz2,LOC106598369,LOC104955241 other upstream 1273952 21252107 ~ 21301421 (-)
AMCG00013112 myhb,LOC106527115,LOC107667337,LOC107721187,LOC108440470 other upstream 1321938 21300093 ~ 21311306 (-)
G42371 myhc4,LOC108412647,LOC107723326,LOC108415768,LOC105910910 other upstream 1358062 21336217 ~ 21517177 (-)

Expression


Co-expression Network