AMCG00013079


Basic Information

Item Value
gene id AMCG00013079
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20034217 ~ 20080006 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013079
ATGCAGCGGCTGCACATCCATTTAAGGAATAAATTCATCGAGTTTGAGGACTCCCAGGAGCAGGAGAAGAAGGACCTACAAGTGAAGGTGGAATCCCTGGAGTCACAGTCCCGTCAGCTGGAGCTCAAGGCCAAGAACTATGCAGACCAGAtcaGCAGATTGGAGGAGCGGGAGGCAGAGCTAAAGAAGGAGTACAATTCTCTCCATTCGAGACACACCGAGATGATTCATAACTATATGGAGCACTTGGAACGCACCAAAATTCAACAGCTTACAGGAGGAGATTCGTTTGAGTCGGGAACACTTGGCCGAGTCAGaGCACCCCTTCTCAGTGCTGGCGCTCCACAATGCCAGGCCAGAGCCATGAGTCCTGGGTGCATGTTGCTCTTTGTATTTGGCTTTGTTGGCGGGGCGGTGGTCATTAATTCAGCGATCCTGGTGTCTCTCTCCGTGCTGCTGCTCGTGCACTATTCCGTATCCACCGGCCTGCCGGCTCTGACGCAGACCCTGCCGAGGATAATCAGGAAAGAGCGTCCTGTTTCGCTGGGGATATTCCCACTGCCCGGGGGGGACCCTCTTCTCACTCCAGACAGCCAGCGAGAGGGAGCAGAGACCCCTGGAACGGAGAACTGGAGATTTAACAACTTGAGCCACCCACGCTCCAACACCAGCCTCAAGCAGTTGGAGGCGGAAGATGTGCTAAAGCAAAGGGATGGTAAGAGGTCACGGGAGGATTGGGGGAATTCACTGGCTGCTGAGAGCAAGGATGAGCTTTCGGACGTCAGCCAGGGGGGGTCCAAGTCGGTCACTCCTGTGTCCACTGCGGCCTCTGACGTGGCCATGCCCTCCGTGGACACGCCCCTGAAGGAACAGGCTGAAGGGCTGAACAAAAACCTGAACACCAGCAACAGGAAACCAGACAGCAGCAAGAACATCGTAGTGCAGCCGGCGCCAGGAACCGTAGGTGTGGGTGAAAATGATGAGAAGTCAGATGTTCAGGCCATCATCGAGTCCACCCCAGAATTGGATATGGACCTCAGTGGATGCAAAGGGGCCAGCACGCCAACCAAAGGCATTGAAAACCTGGCGTTTGACCGGAACACAGAGTCCCTCTTCGAGGAGCTGTCGTCTGCCGGCTCTGGGCTCATTGGTGATGTGGATGAGGGGGCAGACCTGTTGGGTATGGGCCGGGAGGTAGAGAATCTCATCCAGGAGAACACACAGCTCTTGGAGACGAAAAACGCTCTGAACGTGGTGAAGAATGACCTCATCGCCAAGGTGGATGAGCTCTCCTGCGAGAGAGAAGTGCTACAGGGTGAGCTGGAGGCGGTGAAACAGGCCAAAACCAAACTGGAGGAGAAGAACAAGGAGCTGGAGGAAGAGCTGAGAAAAGTACGGGCCGAAGCTGAAGAAGCAAAACAGAAGTCAAAAGAGGAAGATGACAGTGACGTTCCCACGGCTCAGAGGAAGAGGTTCACGCGTGTAGAGATGGCCCGGGTTCTGATGGAGAGGAACCAGTACAAGGAGAGGCTCATGGAGCTGCAGGAGGCAGTGCGGTGGACCGAGATGATCCGCGCTTCAAGAGAGAGCCCAGCCTATTCTGAAAAGAAGAAATCCAGTATCTGGCAGTTTTTTAGCCGGCTCTTCAACCCTTCAAGCACCACAACCAAGAAACCGGAGCTACCAGTGAACGTCAAATATAATGCGCCCACCTCACACATCACTCCCTCGGTGAAGAAGAGAAGCAGCACTTTAGCTCAGCTACCTAGCGACAAATCAAAAGCGTTCGACTTTCTCAATGAAGAGGTTGACTCAGGTAATCAGGCATCACGCAGAGAGCAGAAGCGGGCTCAGTATAGGCAGGTCAAGGCCCATGTGCAGAAGGAGGATGGCAGGGTACAGGCCTATGGTTGGAGTCTACCCCAGAAATACaagGTGGCAAACGGTGGACAGGTTGATAACAAAATGAAGAATTTACCAGTACCTGTGTATCTGAGGCCTTTGGATGAGAAAGATGCTTCTATGAAGCTGTGGTGCGCCGCGGGCGTCAACTTATCGGGAGGAAAGACTCGAGACGGAGGCTGCATAGTGGGTGCCAGCGTCTTCTATAATGATGTAGCCGGCTCTGAATTGGAGGGGCAGAAGCAGAGAAAAGGATCTCAGAGCAGCTTGGACAGGCTGGAGCAGGAACTCAAGGAACAGGAGAAGGAGTTACGGCAGCATGAAGAGCTGTCCAGTCTGGTGTGGATCTGCACCAGCACTCAATCCACCACCAAAGTCATGGTCATAGATGCCAACCAACCTGGCAACATCCTAGACAACTTCTTTGTGTGCAATTCCCACGTGCTCTGCATTGCCAGTGTGCCAGGAGCCCGAGAGACGGACTATCCAGCAGGGGAGGAGGTTCCccaggagggagaaggaggacaAATGGACAGTGCCTCGCTGGCGGGCAGTGTGGCCAGCAACAGTTCAGCGGGCAGTGACAGCACGCTGGGAGGAATCACTGTGGTCGGCTGCACTACAGAAGGGGCAGCTGCGATCCCCCAAACCGTGTGCACCTCTGTCAGTGCCTCGCCTGTCCCCGACGTCCAGACAGGCGAGGGGGCCACTGCTGAGGGGGCCGAGGATGACGAGGTCCCTGCAGCAGAAGAGGCCATGGAAGCCACCGAAGCCAGCGCTGGGTCAGGAGACGACAGTGCCGATGTCAGCCAGCCAGGCATCTACACAGAGCATGTCTTCACCGACCCCCTGGGGGTCCAGAACACGGCCGAGAGCTCTCCCGTCTACCCGCAACGGGAGTCGGATCTATTCAAGGACGGGGTCTCATCGCTCCCAGATGAGCAGGACCTCATGAGGGAGGAGGCACAGAAGATGAGCAGTGTCCTGCCCACCATGTGGCTTGGAGCCCAGAACGGATGccTCTATGTTCACTCCTCTGTGGCCCAGTGGAGGAAGTGTCTGCATTCAATCAAACTGAAAGATTCGATTCTGAGTATTGTacacgtTAAAGGCAGAGTCTTGGTTGCCCTGGCTGATGGAACACTAGCCATCTTTCATCGAGGAGTGGACGGCCAGTGGGACTTAACCAACTACCACCTCTTGGACCTGGGCCGGCCTCACCACTCCATTCGCTGCATGACTGTCGTGCATGACAAGGTGTGGTGCGGCTACCGGAACAAGATCTACGTTGTCCAGCCAAAGGCTATGAAAATAGAGaaatCCTTTGATGCCCACCCCAGAAAGGAGAGCCAGGTGAGGCAGCTAGCCTGTGTTGGAGACGGCATCTGGGTGTCAATCCGTCTCGATTCCACCCTGAGACTCTTCCATGCGCACACTTATCAGCATCTACAGGATGTTGACATTGAGCCCTATGTCAGCAAGATGTTAGGCACCGGCAAACTGGGATTCTCTTTTGTACGGATCACTGCTTTGATGGTGTCTTGTAATCGTCTGTGGGTTGGAACTGGAAATGGAGTTATTATTTCCATCCCATTAACTGAAACCGTTGTCCTCCACCAGGGACGTTTACTGGGGATAAGGGcCAACAAGGTCACCACAGGAACGGTGACCCGCCCCGGTAGTGTCATCCGGGTGTACGGAGATGAAAACAGCGACAAAGTGACGCCAGGAACGTACATCCCATACTGCTCCATGGCCCACGCCCAGCTCTGTTTCCACGGCCACCGTGATGCAGTGAAGTTCTTTGCGGCGGTGCCAGGTCAGGTGGTCTGTCCTTCAGCCAACACTGGTGGCGACAGTGTCCCCGACAAACCGGGCCCTCCAGCCTCAGACCCATCCAGCCAGGATCTGGTGAAGTCGGTGCTCGTGATGAGTGGAGGAGAGGGCTACATCGACTTCAGAATGGGAGACGAAGGAGGAGAGACGGAGGAGTTCAACAACACGACGTTGCACCTGCAGCCTTTCCTGGCCAACGCCGAGAGGAGCCATTTGATAGTGTGGCAGGTAATGTCCAACGAGGAGTGAGAGCCCCATTCACACCCAGTGCCATCCACAAGAGAGGAAGACCGAGAAAACCTTCTgcatgttctttctttttttttttttttttttctgttttgattttttt

Function

GO: NA

KEGG:

id description
K20317 SPAG9, JIP4; c-Jun-amino-terminal kinase-interacting protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013079 True 4090 mRNA 0.55 32 20034217 20080006

Neighbor

gene id symbol gene type direction distance location
AMCG00013081 spag9 coding upstream 26259 20007617 ~ 20007958 (+)
AMCG00013076 nme2b.1,LOC105913039,LOC107727143,LOC107573071 coding upstream 51364 19980540 ~ 19982853 (+)
AMCG00013074 NA coding upstream 956516 19072236 ~ 19077701 (+)
AMCG00013073 NA coding upstream 969678 19048484 ~ 19064539 (+)
AMCG00013064 tmem104 coding upstream 1341466 18691996 ~ 18692751 (+)
AMCG00013082 LOC104949960,LOC107101812 coding downstream 177654 20257660 ~ 20258634 (+)
AMCG00013088 luc7l3 coding downstream 318603 20398609 ~ 20403101 (+)
AMCG00013087 NA coding downstream 405017 20485023 ~ 20502341 (+)
AMCG00013086 LOC106606937,LOC105022949,LOC106601506 coding downstream 432710 20512716 ~ 20513526 (+)
AMCG00013089 NA coding downstream 443785 20523791 ~ 20534323 (+)
G42077 NA non-coding upstream 46357 19986178 ~ 19987860 (+)
G42054 NA non-coding upstream 447424 19586528 ~ 19586793 (+)
G41990 NA non-coding upstream 966007 19066973 ~ 19068210 (+)
G41924 NA non-coding upstream 1336585 18696820 ~ 18697632 (+)
G41908 NA non-coding upstream 1373695 18660254 ~ 18660522 (+)
G42127 NA non-coding downstream 307678 20387684 ~ 20392609 (+)
G42172 NA non-coding downstream 471254 20551260 ~ 20551817 (+)
G42177 NA non-coding downstream 547088 20627094 ~ 20627334 (+)
G42269 NA non-coding downstream 759583 20839589 ~ 20840560 (+)
G42277 NA non-coding downstream 809669 20889675 ~ 20890332 (+)
G41978 NA other upstream 1004939 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 1059855 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 1803979 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 3304684 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 4242590 15782364 ~ 15791627 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 1189669 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 1206025 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other downstream 1290837 21370843 ~ 21421316 (+)
G42344 LOC108412647 other downstream 1346654 21426660 ~ 21486808 (+)
G42453 NA other downstream 2162423 22242429 ~ 22245790 (+)

Expression


Co-expression Network