AMCG00013087


Basic Information

Item Value
gene id AMCG00013087
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20485023 ~ 20502341 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013087
ATGATTTCCGAAGAGCGAAGTAATCACATCACCAAGCAAGCCCTGAATTTCCCGGTGGGCTTATTGATTAGCTCACCAAAGAGAAAGTTAGCAAAGCTCGGCAGGAAACCAAGCAATGGATCCGTACAGTCAAATTCTTCCAACGCCACGACCAGGTCTGCTGAAGGCATGGGAGTCAGGCAGCCGGCCAAAAACAAGATCCGAAGGCACAACAACCGGCTGTCGACTGTGTTTAACAGAAGCCCCTACCTAAAGGATGGCCAAGAAGACTCGGCTGTCATGGGTGGAATCCAGGTGACCGATGATCCAGCAGAGCTGTCCATGCAGATATCTGCTCCTGGTGTCCTCAAAATCTTTGGCAACGACATCAGCAAAGGAGCAAACTACAAGAGCGTGCTGGCCACTCCACGCTCCAGTGCCAAGGAGCTGGTGAAAGAGGCCCTGGAGAGGTACTCTCTGGACAAGGCTGACGCTGGGGCCTACGTCTTGTGCGATGTGATTGGGCGGACCGGGGAAGACCACCAGTGGAGGACTGAGTGCTTTCGAGTGGTGGGCAGCAATGAAAAGCCCCTCATCTTACAGTCTCTGTGGAAACCCAAGGAAGGCTTTGCCCGGCGCTTTGAGATCCAGATGAAATCCAGCGTGGAGGAGAAGACCTCGAAGGACAAAGATACACTCACAGCAGGTATCAATGCACAGGCTCGCAAGCTGCAGAAAATCAGGTCCCGGGTGACCTCGGCGTTTATCGACGGGGACGTCAAGAGCAACCTGGCACTGTGGCGTAGTGTGAGCGAAATGGACCTCTCGGTGAAGTCCAAGGACCCGCACAAGATTGTGAAAAACCACCTCCTGGAAGACGCTGAGTCGGAGGCAGACAAAGAAGCCCACTGTCTGGGGATCGAGAAGGAGGAGACGGAGAGCAGTGATGACAACGCCACACAGTATTCCATTCACCCACCTTTTGACTTCCCCTACTTCCTCCTGCTGCAGGGCTACAGTTACAGACAGGACTTTGTTATTTACCTGATGGGCGGGATGACCCACATTTTCGGACGCTGTAGTGAGCACTCCACCGGGGAGGACGAGGAGCGTCTCAAGGTGGACATTCTCCTTTCTGCCCCGGACATCCTGCCTCAGCACTGCTGCATCCGGCGCCTGGACAATCCCGACCCAAGGGACAGCGTCAAGAAGATGGTGACCCTGGTCAAGCCACTGCATGGTGCTCTGGTCACCCACAACGGGGTGGCCCTCAAGGAAGAGGCTGAGCTCCATCCTGGGGACCTGATTGGGCTGGGTGACTATTACTTGTTCATGTTCAAGGACCCCACTGCCACCACCGCCAATCAGAGACCCTCGTGGTTGATGTCACCTTGCCGGAGGGCGGGGGGCACCTGCAAAATGTGTGGCTCCTCCCTCCAGGACTCCCAGAAATTCAAAGCTGCCCATTGCAAGCTGGTCCCCCTGTTGAAGGACTCCGAGGGAGGGGACCTCTCCCTACAGTATGACCCTCAGCAGGAGGACCGACTCCTACAAAAGATCATCCACCTGACTGATCCCAAGGGTCCCGAACCCAAACTGACCCCGGCCTACCTGCTGTGTCTCTGCATTCAGCACTCTGCCACCTCTCTCCAGATGGCAGATTTCAGGAGGCTCTTGCTCAGGATAGCCAGTCAGATTCAAACTGCCATGTGGGAAAAGACCAAGGAGTTAGCTGCCATCCAACCCGAAATCGGCTCAAGCCGAGTGCAGCAAGACCCAGAGGAGCTTAATCTGTTGAACATCAAGGAGCTCATCCCTGGCTTGCAACCCCTGGTCTTCTGGATGGCCAATTCCATAGAGCTGCTGCACTTCATTCAGCAGGAAGTGCCCAAGCTTCTCCAGTTGGGTGATGAGGAAGAGGACATTGCAGaAATGTCAGATTCTCAGCTGTCTTCCACCAGAGCGGCGAGTGAGGAGGCCATGACTGTTCTTGAAGAAGTCATCATGTTTACATTCCAACAGTCTGTGTACTACCTCACCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013087 True 2022 mRNA 0.55 8 20485023 20502341

Neighbor

gene id symbol gene type direction distance location
AMCG00013088 luc7l3 coding upstream 81922 20398609 ~ 20403101 (+)
AMCG00013082 LOC104949960,LOC107101812 coding upstream 226389 20257660 ~ 20258634 (+)
AMCG00013079 NA coding upstream 405017 20034217 ~ 20080006 (+)
AMCG00013081 spag9 coding upstream 477065 20007617 ~ 20007958 (+)
AMCG00013076 nme2b.1,LOC105913039,LOC107727143,LOC107573071 coding upstream 502170 19980540 ~ 19982853 (+)
AMCG00013086 LOC106606937,LOC105022949,LOC106601506 coding downstream 10375 20512716 ~ 20513526 (+)
AMCG00013089 NA coding downstream 21450 20523791 ~ 20534323 (+)
AMCG00013092 NA coding downstream 55887 20558228 ~ 20565344 (+)
AMCG00013093 NA coding downstream 64806 20567147 ~ 20625298 (+)
AMCG00013091 bsk146,LOC103373441,LOC104933992 coding downstream 139351 20641692 ~ 20650263 (+)
G42127 NA non-coding upstream 92414 20387684 ~ 20392609 (+)
G42077 NA non-coding upstream 497163 19986178 ~ 19987860 (+)
G42054 NA non-coding upstream 898230 19586528 ~ 19586793 (+)
G41990 NA non-coding upstream 1416813 19066973 ~ 19068210 (+)
G41924 NA non-coding upstream 1787391 18696820 ~ 18697632 (+)
G42172 NA non-coding downstream 48919 20551260 ~ 20551817 (+)
G42177 NA non-coding downstream 124753 20627094 ~ 20627334 (+)
G42269 NA non-coding downstream 337248 20839589 ~ 20840560 (+)
G42277 NA non-coding downstream 387334 20889675 ~ 20890332 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding downstream 754244 21256585 ~ 21304213 (+)
G41978 NA other upstream 1455745 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 1510661 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 2254785 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 3755490 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 4693396 15782364 ~ 15791627 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 767334 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 783690 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other downstream 868502 21370843 ~ 21421316 (+)
G42344 LOC108412647 other downstream 924319 21426660 ~ 21486808 (+)
G42453 NA other downstream 1740088 22242429 ~ 22245790 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000047_06667661_06692521 NA coding CI01000047 null 6667220 ~ 6692521 (-)