AMCG00013094


Basic Information

Item Value
gene id AMCG00013094
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20646613 ~ 20680608 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013094
AATTGATATGGAACCCCCAACTCCCAACCAGTCAGATGGTTTACATCCTCAACCAGACCTTGCCCCCTGCAGTCTCTCTACAGTCTATGACCTAACAAGGAAACGAAAGGAAAACCTGCTGAGAAACAATTCAGTGGAAACCATGCATGTCGTCAGCGCACCCAGCTGGTACATCAACCCGGGCAACAAGGGAATCTTCCAGGAGAACAACTCTGACCACACTGCCCACCAGAACGAAAAAATTCAGCCAGACGATGCCTTTTCGAATACTACGGTCACCCTGTCTTATGTGAGCAGGTCTCACGTGTTTACTTCCCAAGACTCCCTGTCGCAACTTCCACTGTGTGTGCCGTCTGTGAACAAAAAACTCTCCTGTCACTCCCCTCCATACAGCCCGGACATGGTCTCCTCCCAGTACGAGCCGGCAGCGAAAGAGAACTGGGAAGCCAACGAAGGCCTTTGTGTGGAGGTGGATCGCCCGTTTCTACAGAATAACACGAGACCTGGGGTGGCAGCACAGTCGGAACTGAACAGGCTAGAGGAGAGTGGTACCCAGGGTCCTCATCCAACTGAGAGCATAAAGGCAGCCTGTCTTATGGAGGAGGCTTTTGGGCAGAATGGGAAGTTGGTCACAAGTTCATGGGGTGCAGAGAAACCTGAGCTTGCAGAAAGCACACTCACTCCTGGAAGAAATGAGGGGAGCCATATGCAAAATGGTACTGACAGCTACTTCCAGGATACAGGACTGTGTGAGGAGAAAGCGATTGAGAGCCCCCCTGCGGGAAGCActgaggagggaaaaaaaacttgtgaCTCTGAGGTGCTGGTTGTGATTTCAAGAACCGAGGAACCTTTAGACTTACAGGACAGTCCCAGTAGTCGGAATGTGTTGTGCAGTCCTGCCAATGGGGGATATGATAGTCCTTTAGAAGAGAACTGGTCTCCTGCTACCTCACAGGACAAATTGGAAGAGATTTCCGTCTTCCCCCACACACTAAATTCTCCCAGTTTTGAGAATTCTTCATTAGATGAAGCTGCTGACACAACATTTGTTACAGTAGGAGAAGATGTTTTAGTTGATTCTGCTGTGACTGGATCTACTGTAACATGTCTTGAAGACACCAGTGCTTTGCAGGACAGCTGTAGCAAGGGCAGTGATGTAACGGAAGGGTTTGTCATTTGCAATGGAATACAAGTGTTGCCAACCAGCGCATCAGAGCCTCCTGTGGAATGGTCAGTCCCATGTGATGGCCTGTCTGAAGCATGTTCAGAAATCGAGGGAAAGGCATGTAACACCCAGGAAGCATCTGTTGATATCCTGCCAAATGGTAATGCTTTAACTGAGGAAAGAACTTTTGAAAGGAAGAAACTTCCTCCTCGTTCTAGGAGAGGAAGGAGATTAGAGGAGATTGTGCAGAACATCACCCCCACTAGGTATAGAGCTTCTGCTAATTTTCATTCCACTAAACTGTTTTCCGTTTCTGCAGCACAGGATGTAGGAACGCATCAGGAAGACCAGGTAAGTTTACACGAGGAAGTCTTGGAATCTGGGAGCAGCCAAGACAGCCAAGAGAAAGTATCTGGTTCAGAAGAAGAGCCCAGTTTAAAGGCAACAGTCTTGCAGACGGACAGTTCTGATGGTTCAGACGGGTCCAGAAGCAAGAAGTCTACCTCAGgtcaaaaaaacagaaatgtctcCCTGCACAGCAGTTCATCTCCCGAGTCCCCAGTGCTCACACCTAAATGCGTGAAGAAAAGGCAGCAACTTGATGCAAGTCCACCAAAATGCTCCCCGGAAAAAAAGAACCTCAGAGCCTCGTCCAAGCTGAAATTGTGTCAGAAGAGCCCCACAAAGCAGCCAAAAATTTCCCCGGGCAGCACAAAAGCAGCCACCGGAAAGAAAACGCGGACCACCAAACGAAAGCGAAAGAAACGCAAAGTGGAGCAGTCCTCTCCGTTTGCACCGAACGAGCCTGAAATCAAACTCAAGTATGTGAATTTTAAAGAGGAGAAAAGGGACAGTAAAGTGGACAGCTTCTCCCCTTACGTCCGGCTGGAGTTAAAGGAATACGCCACTTGCACCGTTATCAACTACCCAGAGGAGGAAAAGGCACGACTTAAGAATGGAAAGGCCCAGGTTGGCCCAGCATTTGCAACTGGGTCTGTTCCCACAACCTCTTGCCTGCTGCCCGGACGCTTAAACACCGAGAGCAAGCGGCGCGGCCACCTCATCTGCTGCCTCTGTGGCCGGTCAGCCAACACCATGGACCTGGGAGATCTGCATGGACCCTACTATCCCAAAGGATTCAAACCTTCCCCCAAACGACATGCAGATGTGCAGAGTTCGAAGGAAGAGGACTACAGTGACTCTGACTCATCCTGTAGCGGCAGAGGCAAAAAACTGAGCCAGGCCGGGCTGTCAGTGGAAGCCACAAGCAGGCCCGTCCGGCAGTGTCAGGCTGCCAAACGGGAGCCTTCTCTGCTGGGAATGGGCCACAGGTGGCCTAGTGACAGGGACTGCTTGCGGAGTCCCGTCGCAAAAAAACCAAAGACGGACTCCAGCGCAGAAGACTGGTTCAGCCCCCCCCTGGTTCCGTTGGATAGCTGTGAATACTGGGTGCATGAGGAGTGTGCCATCTGGTCCGCAGGCGTCTATCTAGTGCGAGGAAAGCTGTATGGATTAGAAGAAGGTGCAAAACTCGCGCAAGAAACGGTGTGTACCACATGCCATCGAACCGGTGCCACACTAGGCTGTTTCTTCAAGGCTTGTCCGAATAAATATCACTACACTTGTGCAGTTCAGTCAGttttttcctttaacaaaGCAAAGgaAAACGTT

Function

GO: NA

KEGG:

id description
K24769 TCF20; transcription factor 20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013094 True 2839 mRNA 0.50 4 20646613 20680608

Neighbor

gene id symbol gene type direction distance location
AMCG00013095 NA coding downstream 68136 20550867 ~ 20578477 (-)
AMCG00013084 NA coding downstream 201219 20406557 ~ 20445394 (-)
AMCG00013085 NA coding downstream 248752 20393654 ~ 20397861 (-)
AMCG00013083 NA coding downstream 274409 20369146 ~ 20372204 (-)
AMCG00013080 LOC107684067,LOC106607505,LOC107565795,LOC107702488,LOC106600809 coding downstream 640792 19988861 ~ 20005821 (-)
AMCG00013096 mprip,LOC105888873,LOC106589502 coding upstream 4663 20685271 ~ 20734269 (-)
AMCG00013097 LOC103366163,LOC100708876,LOC103153053 coding upstream 66881 20747489 ~ 20760002 (-)
AMCG00013103 LOC104927391,LOC101078514,LOC101475813,LOC100711440 coding upstream 161010 20841618 ~ 20854064 (-)
AMCG00013102 rcvrn coding upstream 303428 20984036 ~ 20985885 (-)
AMCG00013106 gas7,LOC106589492 coding upstream 398998 21079606 ~ 21096419 (-)
G42136 NA non-coding downstream 241528 20401708 ~ 20405085 (-)
G42078 NA non-coding downstream 658878 19986243 ~ 19987735 (-)
G42058 NA non-coding downstream 869884 19776524 ~ 19776729 (-)
G42056 NA non-coding downstream 961955 19684436 ~ 19684658 (-)
G41925 NA non-coding downstream 1949006 18696820 ~ 18697607 (-)
G42278 NA non-coding upstream 209075 20889683 ~ 20890288 (-)
G42376 myhz1.2,myhz1.1,LOC108415768,LOC102780693,LOC105899468 non-coding upstream 513541 21194149 ~ 21195350 (-)
G42378 LOC106596905,LOC106577420,LOC106569812 non-coding upstream 528657 21209265 ~ 21209649 (-)
G42372 LOC105910910,LOC103366176,LOC777984,LOC100705928 non-coding upstream 606712 21287320 ~ 21310348 (-)
G42382 NA non-coding upstream 660362 21340970 ~ 21427716 (-)
AMCG00013090 NA other downstream 100802 20531194 ~ 20545811 (-)
G42076 NA other downstream 663733 19980336 ~ 19982880 (-)
AMCG00013070 NA other downstream 1575195 19068245 ~ 19071418 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other downstream 1623835 18977060 ~ 19022778 (-)
AMCG00013051 NA other downstream 2381770 18258089 ~ 18264843 (-)
G42366 myhz2,LOC106598369,LOC104955241 other upstream 571499 21252107 ~ 21301421 (-)
AMCG00013112 myhb,LOC106527115,LOC107667337,LOC107721187,LOC108440470 other upstream 619485 21300093 ~ 21311306 (-)
G42371 myhc4,LOC108412647,LOC107723326,LOC108415768,LOC105910910 other upstream 655609 21336217 ~ 21517177 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other upstream 656459 21337067 ~ 21375763 (-)
G42375 LOC108261476,LOC105030495,LOC108261437,LOC108254801,LOC108254800,LOC108417520 other upstream 670052 21350660 ~ 21360107 (-)

Expression


Co-expression Network