AMCG00013097 (LOC103366163,LOC100708876,LOC103153053)


Basic Information

Item Value
gene id AMCG00013097
gene name LOC103366163,LOC100708876,LOC103153053
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20747489 ~ 20760002 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013097
ATGTCCGACTTTGAAGAGTTTGAGAAGCAGCTCAGCGAGAATCGACAGGaaagagaaaaagagcgGCACAAAAAAAGAAGCCGGAGCCGGTCACACAGCCGCAGTGAGAAGCACCGCAGCTGGAGCAAAGACCGGGCCAGCCACAGCCGGGACAAGAGGAGCCGCAGCCGAGACCGCAAGAGCAAGAGCAGGGACAGGAGGAGTGGATCCCAGGAGCACAAGAAACATAGCTACTCTCCACGCAGGACGCGGAAGAAACGAATGTGCAAATACTGGGATGTTCCCCCTCTGGGCTTTGAACACATAACACCGATGCAGTACAAAGCTATGCAAGCTGCTGGCCAAATCCCAACTTTAGCTCTGTTGGCGACATCCACAACGAGTGGAGTGGCCATAACGCCAACCCAAGTGCCAATAGTGGGCAGCCAGATGACCAGACAGGCCAGGCGTCTATACGTGGGCAATATTCCTTTTGGAGTCACTGAGGAGGCTATGGCGGATTTCTTCAACGCTCAAATGCGTCTTGCTGGCCTTTCGCAAGCTCCAAGCAACCCAGTCCTTGCAGTACAGATTAACCAGGATAAAAATTTTGCTTTCCTGGAATTTCGCTCAGTTGATGAGACCACACAGGCCATGGCTTTTGATGGGATAATATTCCAGGGGCAGTCATTAAAAATAAGGCGTCCGCACGATTATCGGCCTTTACCTGGTATTTCAGAGCAACCTTCTTTTCATGTCCCAGGTGTAGTTTCCACCGTGGTCCCGGATTCACCACACAAGCTCTTCATTGGAGGCTTGCCCAACTATCTCAATGATGATCAGGTAAAGGAACTCTTGACATCATTTGGCCCACTTAAGGCTTTCAACCTAGTGAAAGACAGCGCCACCTCTTTGTCTAAAGGTTATGCCTTTTGTGAATATGTTGATGTCAGTGTTACTGACCAGGCTGTGGCAGGACTGAATGGCATGCAGCTTGGCGACAAAAAGCTAATCGTTCAGCGGGCAAGTGTGGGGGCTAAAAATGCTAATCCTACCGCCATTATCGAGGCTCCGGTGACTCTGCAAGTGCCAGGGCTCCAGACACTGCAGAACACTGGGATTCCCACAGAGGTGCTGTGCCTGCTCAACATGGTGATGCCCGAGGAGCTGGTGGACGATGAAGACTACGAGGAGATACTGGAGGACATCCGCGAGGAGTGCTGCAAATACGGCAACGTGCGCTCCATTGAAATCCCACGCCCTGTGGACGGGCTGGAGGTGCCAGGTTGTGGCAAGATCTTTGTGGAGTATGTGTCTGCGTCTGACTGCCAGAAGGCCATGCAAGCGTTAACTGGACGCAAGTTTGCTAACAGGGTGGTTGTTACCAAATACTATGATCCAGATATGTACCACAGACATGAGTTTTGAATCCTGAAAGAGCAGATATACGGACTGTACAAAGTTCCCAACTCTTTTCCAAAGGGGGTTGAGCACTTCACCAGTTGTGTATAGTCATTTTCTTGTACAGTCTTCCGCTTTACTTGCAATACAGCATAGTACTTTTCTTATTTAGTTCTACAGATTTgaaaggggggaaaataaaagtatttttatgtacttttaCCATTCTTGTGTTAAATTTTAGCTCAGTTCTAGTTTGATAACCTTAATGTGAAGTGAATTACTTGTAGGGAATAGAATTGAATAACCTGCTAAAAgaaaatttaaattgtttttcaatgttGCAATAATAGGTTAATGTTTCTCAGGGTAGAATATAACATGGATATTCtcctttggaaaaaaaacattaccatAACCTTGCACAACCAGAGTGACTATCtttattaatgcaaatatttgttttaacaatgtaaaaatacaaattctaaaTCTCTGTCCAAGCCAAGCTAAAAACTgctgttgttttggttttatttttcatttttgttagaGCAGATAGAGCAGAAAGTTGATACTTTAGTTATTGAATGTATTCTGAGTACTCTGTTGAAAAGAGTGTGCTCCACCACTTTTAGTAATTTGACATTATATGTGCCAGTGCTAAATAAAATATCCATGTCAATTCAGTCCTTTTGTAGAATAAGAGGTAGGACCTTTTTATAGGTGCTTTGGAATAGGAAAAGTGTTAAATGCTAAACATACTCCTAGAGTGATTTGTTTATGAAGCagtatacatttgtatactCTGACCCAAATTCCAGACCTATTCTTTTACTCTTGAAAAACTGATTTTAGGATTAACTAATAAGGTGCAGTAAAACAGGcttcatttgtaattcatgCAAATTGTATTGACATGAATGTGTCCAGTTCTCCTGGAACATAAATAATTTTTATGTCAACATATTGAATCCATCAATTTTATAGCTTATGGGAGGATCTTCCTTAAAGCAAATGTACAATTGTCAGACATAaaggagtgtttttttgttgttgttgctgtttgttttttaagtgtggCCTGGTCAAAGTTAGATAAACGGTTATAAGACCAGGTCAGTATGTAAAGTCCTCAATGCATTAAGCCAAATAACATTTGCATGAAAAATCATGAATTGCTGTGATATTAGGGTCTTGCAGGTAAACCTTGACAAAAATACTGTTCAGATATGTGCAATATCTATCACTGACACTAGGGGCAATAGCTATCAAGTGGAGAATTCTTGAggaaaccttttttgtttttaatttatgaagaAAGCAGAGTTACTGAGAATGAATTTGTGGACAGTGCGTTACCTATTTAATAACAGCgtaaatgtttgtaaatatacagttttgAATGTGAGTGCATATCAACCGGTGTTTGGTTTTTCTAATTCCTAATTGCCACTGCCATGccttcaaataaattattgcatatttatgtctgtttatgctttcatttttcatttcttgcatCCATGGTGTACCTTGCCTATTTTTTCAAGTAATAGAAAATTGATGTAAATTCAGGAAATCTTCTTTGTCTTATTTCAGTGTGATGTGgtatgcagtgttttaattttttgtacttttgtggACTGATGTTTCaggtataaagaaaaataaatacatatgcttTAGTTGTTTCATTTTTACTCAGTGAcactatttaatttgtaaacaatatattataatgttcTGGAAAATTGAAGATTTTAACAATTTCAATAATTAAGATTAGAAATATTTGCATAGACACGGTCTTTAATGTTGGCATGCAGgcagtgtttaaaatatgtgGACATATAAGCCACTATCCATTGGAGGGAAATAAAGCTTTTGTTACAGTTAATGAGCCCTTACATCCATGATTGTTGCTTGAATAGAATTTAGTGTTCCAGACACTGATTGTTTGCCTG

Function

NR:

description
PREDICTED: splicing factor U2AF 65 kDa subunit-like

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0005634 nucleus cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12837 U2AF2; splicing factor U2AF 65 kDa subunit

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013097 True 3347 mRNA 0.40 11 20747489 20760002

Neighbor

gene id symbol gene type direction distance location
AMCG00013096 mprip,LOC105888873,LOC106589502 coding downstream 13220 20685271 ~ 20734269 (-)
AMCG00013094 NA coding downstream 66881 20646613 ~ 20680608 (-)
AMCG00013095 NA coding downstream 169012 20550867 ~ 20578477 (-)
AMCG00013084 NA coding downstream 302095 20406557 ~ 20445394 (-)
AMCG00013085 NA coding downstream 349628 20393654 ~ 20397861 (-)
AMCG00013103 LOC104927391,LOC101078514,LOC101475813,LOC100711440 coding upstream 81616 20841618 ~ 20854064 (-)
AMCG00013102 rcvrn coding upstream 224034 20984036 ~ 20985885 (-)
AMCG00013106 gas7,LOC106589492 coding upstream 319604 21079606 ~ 21096419 (-)
AMCG00013114 LOC102780693,LOC101068441,LOC108261437,LOC101079795 coding upstream 488080 21248082 ~ 21263482 (-)
AMCG00013117 NA coding upstream 510347 21270349 ~ 21278662 (-)
G42242 NA non-coding downstream 73261 20666345 ~ 20674228 (-)
G42136 NA non-coding downstream 342404 20401708 ~ 20405085 (-)
G42078 NA non-coding downstream 759754 19986243 ~ 19987735 (-)
G42058 NA non-coding downstream 970760 19776524 ~ 19776729 (-)
G42056 NA non-coding downstream 1062831 19684436 ~ 19684658 (-)
G42278 NA non-coding upstream 129681 20889683 ~ 20890288 (-)
G42376 myhz1.2,myhz1.1,LOC108415768,LOC102780693,LOC105899468 non-coding upstream 434147 21194149 ~ 21195350 (-)
G42378 LOC106596905,LOC106577420,LOC106569812 non-coding upstream 449263 21209265 ~ 21209649 (-)
G42372 LOC105910910,LOC103366176,LOC777984,LOC100705928 non-coding upstream 527318 21287320 ~ 21310348 (-)
G42382 NA non-coding upstream 580968 21340970 ~ 21427716 (-)
AMCG00013090 NA other downstream 201678 20531194 ~ 20545811 (-)
G42076 NA other downstream 764609 19980336 ~ 19982880 (-)
AMCG00013070 NA other downstream 1676071 19068245 ~ 19071418 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other downstream 1724711 18977060 ~ 19022778 (-)
AMCG00013051 NA other downstream 2482646 18258089 ~ 18264843 (-)
G42366 myhz2,LOC106598369,LOC104955241 other upstream 492105 21252107 ~ 21301421 (-)
AMCG00013112 myhb,LOC106527115,LOC107667337,LOC107721187,LOC108440470 other upstream 540091 21300093 ~ 21311306 (-)
G42371 myhc4,LOC108412647,LOC107723326,LOC108415768,LOC105910910 other upstream 576215 21336217 ~ 21517177 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other upstream 577065 21337067 ~ 21375763 (-)
G42375 LOC108261476,LOC105030495,LOC108261437,LOC108254801,LOC108254800,LOC108417520 other upstream 590658 21350660 ~ 21360107 (-)

Expression


Co-expression Network