AMCG00013102 (rcvrn)


Basic Information

Item Value
gene id AMCG00013102
gene name rcvrn
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20984036 ~ 20985885 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013102
ATGGGGAACAGCAAAAGTGGAGCACTCTCAAAGGAAATTCTGGAAGATTTGAAGCTGAGCACCAGATACACTGAGGAGGAGCTGAGTGCCTGGTACCAGTCCTTCCTGAAGGAATGTCCCAGTGGGAGGATCAGCAAGGAGCAATTTGAAGGTATTTATGCCAGCTTCTTCCCTGATGCGGATCCCAAGGAATATGCCCACCACGTCTTCAGAAGCTTTGATGCCAACAGTGATGGCACCTTAGACTTTAAGGAATATATCATTGCACTGCACCTGACCTCATCCGGGAAAACTATGCAGAAACTGGAGTGGGCATTTGCTCTGTATGACGTTGATGCCAATGGGACCATCAGTAAAACCGAAGTCCTGGAAATTGTCAAGgccatatttaaaatgataagcGAAGATGACCAAAAGACGCTTCCACAGGACGAGAGTACGCCAGAAAAGAGAACGGACAAAATCTGGGATTACTTCGGCAAGAAAGAACAAGATAAGCTTACAGAAGGGGAGTTTATTCAAGGGATCATGGAGAACAAGGAAATCCTCAGATTGATACAGTTCGAGCCACAAAAGGTCAAAGATAGGCTAAAGGAAAAGAATCAGTAG

Function

symbol description
rcvrn Predicted to enable calcium sensitive guanylate cyclase activator activity. Predicted to be involved in signal transduction. Predicted to act upstream of or within phototransduction; regulation of calcium ion transport; and visual perception. Predicted to be located in several cellular components, including perikaryon; photoreceptor inner segment; and photoreceptor outer segment.

NR:

description
PREDICTED: recoverin

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K13764 RCVRN; recoverin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013102 True 609 mRNA 0.45 3 20984036 20985885

Neighbor

gene id symbol gene type direction distance location
AMCG00013103 LOC104927391,LOC101078514,LOC101475813,LOC100711440 coding downstream 129972 20841618 ~ 20854064 (-)
AMCG00013097 LOC103366163,LOC100708876,LOC103153053 coding downstream 224034 20747489 ~ 20760002 (-)
AMCG00013096 mprip,LOC105888873,LOC106589502 coding downstream 249767 20685271 ~ 20734269 (-)
AMCG00013094 NA coding downstream 303428 20646613 ~ 20680608 (-)
AMCG00013095 NA coding downstream 405559 20550867 ~ 20578477 (-)
AMCG00013106 gas7,LOC106589492 coding upstream 93721 21079606 ~ 21096419 (-)
AMCG00013114 LOC102780693,LOC101068441,LOC108261437,LOC101079795 coding upstream 262197 21248082 ~ 21263482 (-)
AMCG00013117 NA coding upstream 284464 21270349 ~ 21278662 (-)
AMCG00013111 LOC100705928,LOC100710639,LOC102793686,LOC101481850,LOC108254796,LOC106589491,LOC102288653 coding upstream 301261 21287146 ~ 21289069 (-)
AMCG00013113 myhz1.1,ns:zf-e68,myhz1.2,LOC108444092,LOC105902796,LOC108254796,LOC108443910,LOC103370565 coding upstream 342315 21328200 ~ 21335131 (-)
G42278 NA non-coding downstream 93748 20889683 ~ 20890288 (-)
G42242 NA non-coding downstream 309808 20666345 ~ 20674228 (-)
G42136 NA non-coding downstream 578951 20401708 ~ 20405085 (-)
G42078 NA non-coding downstream 996301 19986243 ~ 19987735 (-)
G42058 NA non-coding downstream 1207307 19776524 ~ 19776729 (-)
G42376 myhz1.2,myhz1.1,LOC108415768,LOC102780693,LOC105899468 non-coding upstream 208264 21194149 ~ 21195350 (-)
G42378 LOC106596905,LOC106577420,LOC106569812 non-coding upstream 223380 21209265 ~ 21209649 (-)
G42372 LOC105910910,LOC103366176,LOC777984,LOC100705928 non-coding upstream 301435 21287320 ~ 21310348 (-)
G42382 NA non-coding upstream 355085 21340970 ~ 21427716 (-)
G42383 NA non-coding upstream 360590 21346475 ~ 21346834 (-)
AMCG00013090 NA other downstream 438225 20531194 ~ 20545811 (-)
G42076 NA other downstream 1001156 19980336 ~ 19982880 (-)
AMCG00013070 NA other downstream 1912618 19068245 ~ 19071418 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other downstream 1961258 18977060 ~ 19022778 (-)
AMCG00013051 NA other downstream 2719193 18258089 ~ 18264843 (-)
G42366 myhz2,LOC106598369,LOC104955241 other upstream 266222 21252107 ~ 21301421 (-)
AMCG00013112 myhb,LOC106527115,LOC107667337,LOC107721187,LOC108440470 other upstream 314208 21300093 ~ 21311306 (-)
G42371 myhc4,LOC108412647,LOC107723326,LOC108415768,LOC105910910 other upstream 350332 21336217 ~ 21517177 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other upstream 351182 21337067 ~ 21375763 (-)
G42375 LOC108261476,LOC105030495,LOC108261437,LOC108254801,LOC108254800,LOC108417520 other upstream 364775 21350660 ~ 21360107 (-)

Expression


Co-expression Network