AMCG00013104 (pts)


Basic Information

Item Value
gene id AMCG00013104
gene name pts
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 20988853 ~ 20999310 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013104
GCGCCCTACGTGCCTTGTGACCGCTGATGTGCGTCACCACAGCACGGTATACaactgggtttgtttgtttccgtTCTGCCACAGGAATAGTAGCCTATTCACTTGAAGTTAAAAAGTAACGTTACATTGTACAAATCCCGTCAACGTGTTTGAACTGCAGGCTAATAGGACACAGcggctgtctgtctgtctctctccccgcCTGGGTTAGAGCCGCTCGGGATGTTTTCAATGGACAGAGACGCCGCAGTCGGGCGCACTGCGTACATAACCCGCGTCCAGAGCTTCAGCGCCTGTCACCGGCTGCACAGCAAAGCCTTGAGCAATGAAGAGAACAAAATTATCTTTGGAAAGTGTAACAACCCCAATGGTCATGGGCATAACTATAAAGCGGAAATAACAGTGCGTGGAAAAATTGATCCTGTTACAGGCATGGTGATGAATCTATGTGACCTCAAGCAGCACATTGAGGACGCAATCATGAAACCACTAGATCACAAAAACCTGGATAAAGATGTCCCATACTTTGCAGATGTTGTAAGcacAACAGAGAATGTAGCAGTGTTCATCTGGGACAGCTTAGTAAAACTGCTACCACCAGATATGCTCTTTGAAGTGAAGATCCACGAAACTGAAAAGAACATTGTTGTTTACCGTGGAGAATAGATTAGTGATTAGAGATGGAGAATGCTATTGGGACCTAAGTGAATGAATGCACAGTggcattttgtttaatgtagaaTGTTTAGAGTTTGTGAAAGCTGTAATttataacactgccaaatatgTGATTCTTAGTTTTTCAAATGTCTGCAATTCTAAAgccttataaaataatatatttacagtgattACTGAACTTTTTCTTTCACTACATATATGAAGAGAGCGAAAGCCTAAGCTAGAATGTGGTTTATTTGCTGATTAACTCTCACTCATTTTCATaagaattattaataattatggcacatcagatgtttgttttctttacaatggATATTCTGAAGTCAAAACAGGTTTACCTTCAACCCTTTATAGAGGTGTAAATGAAAGTAGTGAAATCCAGTAAAACGTACTTTGATTACTAGTGGTACAGCTGAAATTAACTGTTGTGATCCAACTTTTAAATCCCAGGAACCCCCGTAACATACCCTGTAACAATGCCTTTCACAACTTGCAACAACACAAATCTTCCGTcctaaaaaacatatataatctAGAAGACATCCATATCAACTCAAATTCACCACAATGACACAAAATATGCTTGCCATGATTACACAGCAGAGGGTGCTATTAAtcctttgttttacattgtaagTACATTATAAGTGGCATGTAAATACAGGGTTTGTGAACTGTAGAAAGGAATTAAAGTTAACGGCATTAATTAATCAGTGTAGAGCTGTAATTGATCACAG

Function

symbol description
pts Predicted to enable 6-pyruvoyltetrahydropterin synthase activity and metal ion binding activity. Predicted to act upstream of or within tetrahydrobiopterin biosynthetic process. Human ortholog(s) of this gene implicated in BH4-deficient hyperphenylalaninemia A and phenylketonuria. Orthologous to human PTS (6-pyruvoyltetrahydropterin synthase).

NR:

description
PREDICTED: 6-pyruvoyl tetrahydrobiopterin synthase

GO:

id name namespace
GO:0006729 tetrahydrobiopterin biosynthetic process biological_process
GO:0003874 6-pyruvoyltetrahydropterin synthase activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K01737 queD, ptpS, PTS; 6-pyruvoyltetrahydropterin/6-carboxytetrahydropterin synthase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013104 True 1421 mRNA 0.39 6 20988853 20999310

Neighbor

gene id symbol gene type direction distance location
AMCG00013100 NA coding upstream 8611 20960421 ~ 20980242 (+)
AMCG00013101 NA coding upstream 157854 20817521 ~ 20830999 (+)
AMCG00013098 NA coding upstream 213552 20773228 ~ 20775301 (+)
AMCG00013099 NA coding upstream 220260 20760866 ~ 20768593 (+)
AMCG00013091 bsk146,LOC103373441,LOC104933992 coding upstream 338590 20641692 ~ 20650263 (+)
AMCG00013105 NA coding downstream 30255 21029565 ~ 21075759 (+)
AMCG00013107 wu:fd14a01,LOC108254800,LOC107571573 coding downstream 186436 21185746 ~ 21216078 (+)
AMCG00013109 NA coding downstream 265880 21265190 ~ 21269791 (+)
AMCG00013108 NA coding downstream 270746 21270056 ~ 21285838 (+)
AMCG00013122 LOC108261602,LOC108254796 coding downstream 341700 21341010 ~ 21343727 (+)
G42277 NA non-coding upstream 98521 20889675 ~ 20890332 (+)
G42269 NA non-coding upstream 148293 20839589 ~ 20840560 (+)
G42177 NA non-coding upstream 361519 20627094 ~ 20627334 (+)
G42172 NA non-coding upstream 437036 20551260 ~ 20551817 (+)
G42127 NA non-coding upstream 596244 20387684 ~ 20392609 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding downstream 257275 21256585 ~ 21304213 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding downstream 364794 21364104 ~ 21411989 (+)
G42345 LOC777982,LOC104957706 non-coding downstream 473406 21472716 ~ 21508824 (+)
G42347 NA non-coding downstream 499663 21498973 ~ 21503924 (+)
G42350 NA non-coding downstream 529471 21528781 ~ 21600968 (+)
G41978 NA other upstream 1959575 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 2014491 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 2758615 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 4259320 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 5197226 15782364 ~ 15791627 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 270365 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 286721 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other downstream 371533 21370843 ~ 21421316 (+)
G42344 LOC108412647 other downstream 427350 21426660 ~ 21486808 (+)
G42453 NA other downstream 1243119 22242429 ~ 22245790 (+)

Expression


Co-expression Network