AMCG00013105


Basic Information

Item Value
gene id AMCG00013105
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21029565 ~ 21075759 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013105
tgcaacatcATACTCTTACAGTCTAGTCAGGATTTCatgaattaacttttttttcttctcacagGTTTTTAATCACTTGTTGATTTTATCTTAAGTTGAAGGGCACAGTTCTGAAATTTGAGTTTTAACTGAAAGTGAGAGCGAGAGCAAGAGTCCTTGGGTTTGGATTTGCGTGGTTCCAAAGAGTTTGGAGGCAGGGAGTCGGGACAAGGTTTATTTTTGTGCGTTTTATTGCGAGGTGGTGAGATGGATCCTGAGGGGCTGGCCGACTCTGACCTTCACCCCAAGCGCTCCCCCTCTTCACAGGAAAAAGAGAGCCTGCAGGAGACCGAGCAGCGGTGTACACAGCTGGTGAAAGCCAAGAGAGAGCTCGAATCCCAGGTGGCTGACCTGAGCGATcgtctggaggaggaggagagctgcACCGCCGAACTGGCCTCCCAGAAATACCGGCTGGAGTCCGAGTGCAACAGCCTGAAGAAGGACATCGAGGAGCTGGAGGGCACTCTGACCGCCgtggagaaagagaaacagCAAGCATTGGAAGATTTACAAACGGAGGAAGAAAAAGTCAACCTGTTGACCAAAGACAAAGCTAAACTGCAGGTTCAGACAGAGGAGCTGGAGTATCTTCTCGAGCAAGAACGAAAGCACCGAAGTGATCTGGAGAAAGCCAAAAGGAAACTGGAAGGCGACAGCAAGATGACAATTGAAAACCTGAATCAGATGGAGAAGCTTAAGACCGATCTGGAAGAGGTCATCAAGAAGAAAGATCTGGAGATAAACGCCACGAACACcaagctggaggaggaggaggccttGAACCTGAAtgtgcagaagaaaaacaaggagcTGCAGgtgCGCATTGAGGAGCTGGAAGAAGAGCTGGAAGCTGAAAGGGCTATACGGTCAAAGGTGGAGAAGCAGCGCTCTGACCTGACCCGGGAGCTGGATGACCTGACTGACCGGCTGGAGGAGGCTGGAGGGGCCACGGCCTCCCAGATGGAGATGAATAAGAAGCGAGAGGCCGAGCTCTTGCGTCTGCGccgggagctggaggaggcatCCCTGCAATCGGAGACCCTGGCCTCGACCCTGCGCAAGAAGCATGCCGACATAGTGGCGGAGATGACCGAGCAGTACGAGAGTCTACAAAGAGTGCGCGCCAAGCTggagaaagacaaacagaacaTGAAGATGGAAATTGACGATCTGACTGCCACTATAGAGAACATGCAGAAAGCCAAGCTGGAagacactgaaaacaaagcCAGTCAAAGCAGTAGGACGAAGACTCTGTTGGCGTCTCAAAGTGAAGATCTTAAGAAACACCTGGAGGAGGAGATCAAGGTCAAGACTGCCTTGAGTAGCAACCTATCCAGCCTGAAACATGACTGCGAGATGCTGAAGGAACAGctggaggaggaacaggagagTAAGCTAGAGTTGCAGAGACTGGTGTCCAAGCTCAACAGCGAGGTGACTCACTGGAGGACACGCTATGAGGCCGACGCCATCCAGAGGACTGACGAGCTGGAGGATGCAAAGAAAAAGCTGTCGTCACGATTACAAGAGGCGGAAGAGGCAGTTGAGGCCACTCAGGCAAAGTGCTCTAGCCTGGAGAAGACTAAACAGAGACTGCAAGGAGATGTTGAGGACCTCTGCATTGACTTAGAAAAGGCCAACGCTTCTGCGGCAGCTCTGGACAAGAAGCAGCGTGTGCTGGAGAAGCAGCTTTCGGACTGGCGTCAGAAATGCGATGACATCCTTGCTGAGATGGACGGGTAGGAGATTACTGACCTCAGTGACCAGCTTGGCGAGGGGGGGAAGAGTGTGCACGAGCTGCAGAAATCCAAGAAGAAGCTCGAGATGGAGAAAGAGGAGCTGCAGGCCTCGTTGGAGGAGTCTGAGGCTGCCCTGGAGGCTGAAGAAACCAAAGTGGTCCGTCTGCAGATGGAGTTATCGCAGGCAAAGTCAGATTTAGATCGCCGACtgcaggagaaggaggaagaggctGAAGCGTCTAGGAAGAGCCATCAAAGGGCTTTGGAGTCCCTGCAGGCCAGTCTCGATACAGAGGTCAAAGGTCGTACAGAGGCAGTGCGAATGAAGAAGAAGCTGGAAGGAGACATCAATGAGCTGGAGATCCAGCTGGACTTGGTCACCAAGAACAACGGGGAGCTGCTGAAGACCATCAAGAAAATGCAGCAGCAGATAAAGGACATGCAGGCCCAGATGGAGGACGAATCCCGACAGCAGGAGGAGCTGAGGGAGCAGCACAGCCTGGTGGAGCGCCGCTGTAACCTCCTGGCCACCGAGGTAGAAGAGTCCCGGACCGGCCTCGACGCCACTGAGCGTGCCCGCAAGATCCTGGAGCAGGAGCTCATCGAAATGACTGAGAAGTACAACGAAATGAACAGTCAGTTCCAGTGCGTGACCAGTCTGAAAAGAAAGCTGGAAGCAGATCTGCAACAGTTTACCACCGAGCACGAGGAACTGCACGGAGAGGTCAGAGCTGCGGAAGAGAAGGCAAAGAAAACCACCATTGAGTTTACCAGAGTGGCGGAGGAGTTGCGTCACGAGCaggaacacacagtgcatctgGAGCGGGTGCGGAAGGGCCTGGAGGGTCAGGTCAAGGACATGACTGTCCGTCTGGATGAGGCAGAGCAGCTGGCTCTGAAGGGGGGCAAGAAGATCATCCAGAAGCTCGAAGGAAGGGTGAAGGAGCTGGAGTTGGAGCTGGATGGTGAGCAGAAGCGCCACACTGAGACGGTGAAAACCCTGCGCAAGAACGAGCGGCGCCTGAAGGAGCTGGTGTTTCAGTCGGAGGAGGACCAGAAAAACCAGCAGAGGATGCAAGAGCTGGTGGAGAGGCTGCAGAACAAGATGAAGGCCTACAAGAGACAAGTGGAGGAAGCGGAGGAACAGGCCAATATGAATTTAGCGAAGTACAGGAAGACGGTGCACGAGCTCGATGATGCTGAGGAGAGGGCCGATATTGCAGAGGCTGCTCTCACAAAGATCAGAACCAAAAACCGGGCTAGCTTTGGCAAGGGATATTCTTCAGGTTACAGCACCCCCTTCGCTGGTATCGTCCGGTCGCCCAGCTCGGCAGGCTCAGAGGGGAGAGCGGAGAAGATCATAAACGATGACGACACGACGTCCCTCATCCCCGCCTACCTCAACTCCCTGAAGAAACTCATGATCGATTAGGAGGTGTTAGACTGGCATGTGATGCATATGAACAATCCAACTGGAATAACAGAAACTTTCatagatatttgtattttattaaagcagactgttttcttccccctttcttTTGTATGAAGCTGTGGGATCATTCCATGGTTCATTCACAGCTTTGATTACAACGCTGGTGTACATTcaccttttttttgtacattttctttctttatattgAGCATCTCTTTGTCTTTTGTTACTTGGGAACTTGCAGTCGCCCAACTGaacttttataattatatatataaaagtaagaaaataaagaaatgtcttaatgtattatggtttgcaACAAAGGTACTGTAGGTAACTTGACACATCAAGAATGTACAGTTGAGGACCAAAAGgagcccccccccaaaaaaaaaggtttgactTTGACAGAATATAATACTTCTACTGTTTTGTCTGGGTGTATTCTACCTGAATATATTAAGTGCACATTTCCATGCTCTACCTTGTGCACATTGTCACTACACTCCTTAACCACTGGTTTTGGGaactttcatattttacatttttggttaGTACTTGGGTTGGGTGTTTTTCTAAATTGTAGATCAAAAGGCTCATTTTATCCAGACACCTTACAGGCTCCATTGTAGCTTCATTCCTTGCAGGTGAAGCACACATTTTTCCAAAAGCAAGTTACCTCCTTATCAGGACTGGGGGTCTTGAAACACATACCGACTGTTTGTTAGGTAAGTACATTAATCTGTACTGCTGCTTATTGTTAACCATGTGTCAGCAATGCTCATAAAACCAATCATTTAGCTCTGGGACGACCTTATTTCTCAGATTTCCACACCTTTAAGAGATCTCTAGAATGATGTGACGTGTTGCCAAATACAATCCCTACAAACTTTAATAACAAACAgcttatatttgtttgtaattggTTGTCCAAATGTTTAGTAATGTTATGTCATAGTTTagtaagaaaacattttcattgtatgGACCATCATTTCAAGAGGTGCTTGAAGCAATTTATTCTAGAgaatttattgaaataattagaTCTGAAACGATGGATTGTATTAAACAGACTCTGCATCAGGTcgaaatacaacacaaatattGTTATCTTTTTACTAAGATAATTAGGCTTAAGAGTAAAAACCCATTGACATATGTCTCTGTCCTTTATTTCACAACTTGGGTAACAACCAAGGAAAAAAATGGGCGAGTATTTACTTCAAGTATAgcccaaacatttttttttctgtcattacATTCCTGGTAACTAGTAGGGAAACATATGAACTAACCGATGCACATTACTGTACAATTAGGGATTTATAAAGAACTTTGTCACTTTATTGTGTGTacttcacaatttaatttacaaaatggaAAGCAGACGAGATTAAACAGTTTGTGTGAGTCACAGGGTTTGGTGATTCATTCAGCTGCATATTTTATCATCCCCAAATTAAGACCTTTACCACCACAAAGTTGAAAAGTGTCAAATACTTTGTATCAATGTGTGGATTGTGAAATcgttaataaaaatgttttatatcatAGAAGATA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013105 True 4785 mRNA 0.47 20 21029565 21075759

Neighbor

gene id symbol gene type direction distance location
AMCG00013104 pts coding upstream 30255 20988853 ~ 20999310 (+)
AMCG00013100 NA coding upstream 49323 20960421 ~ 20980242 (+)
AMCG00013101 NA coding upstream 198566 20817521 ~ 20830999 (+)
AMCG00013098 NA coding upstream 254264 20773228 ~ 20775301 (+)
AMCG00013099 NA coding upstream 260972 20760866 ~ 20768593 (+)
AMCG00013107 wu:fd14a01,LOC108254800,LOC107571573 coding downstream 109987 21185746 ~ 21216078 (+)
AMCG00013109 NA coding downstream 189431 21265190 ~ 21269791 (+)
AMCG00013108 NA coding downstream 194297 21270056 ~ 21285838 (+)
AMCG00013122 LOC108261602,LOC108254796 coding downstream 265251 21341010 ~ 21343727 (+)
AMCG00013123 NA coding downstream 268105 21343864 ~ 21345063 (+)
G42277 NA non-coding upstream 139233 20889675 ~ 20890332 (+)
G42269 NA non-coding upstream 189005 20839589 ~ 20840560 (+)
G42177 NA non-coding upstream 402231 20627094 ~ 20627334 (+)
G42172 NA non-coding upstream 477748 20551260 ~ 20551817 (+)
G42127 NA non-coding upstream 636956 20387684 ~ 20392609 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding downstream 180826 21256585 ~ 21304213 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding downstream 288345 21364104 ~ 21411989 (+)
G42345 LOC777982,LOC104957706 non-coding downstream 396957 21472716 ~ 21508824 (+)
G42347 NA non-coding downstream 423214 21498973 ~ 21503924 (+)
G42350 NA non-coding downstream 453022 21528781 ~ 21600968 (+)
G41978 NA other upstream 2000287 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 2055203 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 2799327 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 4300032 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 5237938 15782364 ~ 15791627 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other downstream 193916 21269675 ~ 21278728 (+)
AMCG00013118 LOC106594791 other downstream 210272 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other downstream 295084 21370843 ~ 21421316 (+)
G42344 LOC108412647 other downstream 350901 21426660 ~ 21486808 (+)
G42453 NA other downstream 1166670 22242429 ~ 22245790 (+)

Expression


Co-expression Network