AMCG00013108


Basic Information

Item Value
gene id AMCG00013108
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21270056 ~ 21285838 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013108
GCTCGAATTGAGGAACTGGAAGAAGAAATTGAGGCTGAACGTGCTTCTCGTGCAAAGACTGAGAAGCAGAGGGCTGATCTCTCCAGGGAACTTGAGGAGATCAGTGAAAGGCTTGAAGAAGCTGGTGGTGCCACTTCTGCTCAGATTGAGATGAACAAGAAACGTGAAGCTGAGTTCCAGAAGCTCCGCCGTGACCTTGAAGAGTCGACTCTGCAGCACGAGGCCACCGCTGCTGCCCTCCGCAAGAAGCAGGCCGACAGCGTGGCAGAATTAGGAGAACAGATTGACAACCTTCAGCGGGTCAAGCagaagctggagaaggagaagagtgaatacaaaatggaaatcGACGACCTCTCCAGCAACATGGAGTCTGTAGCCAAGTCTAAGGATGCCCAACTGCACCTGGATGATGCTATCAGAGGACAGGAAGACATGAAGGAACAGGTTGCCATGGTGGAGCGCAGGAACACCCTCATGATGGCTGAGATTGAGGAAATGAGGGCTGCCCTggaacagacagagagagcacgCAAAGTGGCAGAGCAAGAATTGCTTGATGCCAGTGAGCGTGTGCAGCTGCTGCACTCCCAGAATACCAGCCTGATCAACACCAAGAAGAAGCTTGAGAGTGACATCTCTCAGCTCCAAGGTGAAGTTGATGACACTGTCCAAGAAGCAAGAAATGCAGAGGAAAAGGCCAAGAAAGCTATTACTGATGCTGCTATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACAAGCTCTCACCTGGAGAGAATGAAGAAGAACTTGGAGGTCACAGTGAAGGACCTGCAGCACCGTTTGGATGAGGCTGAGCAGCTGGCAATGAAGGGTGGAAAGAAGCAGCTCCAGAAACTGGAGGCCAGGAAAGAATTTGCCAACATGAAGGAAGAATTTGTGAAATGCAAGGAAGATCTGGCAAAGGCAGAAGCCAAGAGAAAGGACCTTGAAGAGAAAATGGTGTCTCTGCTGCAGGAAAAGAATGACCTGGTGCTACAAGTGCAAGCTCTGGAGGGTTCACTGGAGCAAGAGAAGAAACTCCGAATGGACCTTGAGAGGGCCAAGAGAAAGCTGGAGGGTGATCTGAAACTAGCCCAGGAATCCATAATGGATctggaaaatgacaaacaacagTCAGATGAGAAGATCAAGAAGGAACTTGAGGAGATCAGTGAAAGGCTTGAAGAGGCTGGTGGTGCCACTTCCGCTCAGATTGAGATGAACAAGAAACGTGAAGCTGAGTTCCAGAAGCTCCGCCGCGACCTCGAAGAGTCGACTCTCCAGCACGAGGCCACCGCTGCTGCCCTCCGTAAGAAGCAGGCCGACAGCATGGCAGAATTAGGAGAACAAATTGACAACCTTCAGCGTGTCAAGCagaagctggagaaggagaagagcgaatacaaaatggaaatcGATGACCTCTCCAGCAACATGGAATCTGTAGCCAAGTCTAAGGCCAAGAGTGCTTTGGCTCATGCTTTACAATCAGCCCGCCATGACTGTGACCTGCTCCGGGAGCAATatgaggaggagcaggaggccaAGGCTGAACTTCAGCGTGGAATGTCCAAGGCCAACAGTGAAGTGGCTCAGTGgagaacaaaatatgaaactgaCGCCATCCAGCGCACTGAGGAGCTTGAGGAGTCCAAGAAAAAGCTTGCCCAGCGCCTGCAAGATGCTGAGGAACAGATTGAGGCTGTGAACTCCAAGTGTGCCTCACTGGAAAAGACCAAGCAGAGGCTGCAGGGTGAGGTGGAAGACCTCATGATTGATGTGGAGAGAGCAAACGCTCAAGCAGCTGCCCTTGATAAGAAACAGAGGAACTTTGACAAGGTCCTTGCAGAATGGAAGCAGAAGTTTGAGGAGGGCCAGGCAGAGCTGGAGGCGGCTCAGAAAGAGTCTCGCTCTCTAAGCACTGAGCTTTTCAAGATGAAGAACTCCTATGAAGAGGCTCTGGATCATCTTGAGACCCTTAAGCGCGAGAACAAGAACTTGCAGCAGGAGATCTCAGACCTCACTGAACAGATTGGTGAGACTGGAAAGACCATTCATGAGCTggagaaagcaaagaaacaagcAGAGACAGAAAAGTCTGAAATCCAGACTGCACTGGAGGAGGCAGAGGCCACACTGGAGCATGAGGAGGCCAAGATCCTTCGTGTGCAGCTGGAGCTGAACCAGGTCAAATCAGAAGTGGAAAGAAAGGTGGCTGAGAAGGATGAGGAAATTGAGCAGATGAAGAGAAACAACCAGAGAATTGTTGACCAAATGCAGAGCGCTCTTGATTCTGAGATCAGGAGCAGGAATGATGCCCTGAGAGTGAAGAAGAAGATGGAGGGAGATCTCAATGAGATGGAAATCCAGCTGAGCCACGCCAACCGCCAGGCTGCTGAGGCCCAGAAACAACTGAGGAACGTCCAAGGACAACTCAAgGATGCCCAACTGCACCTGGATGATGCTATCAGAGGACAGGAGGACATGAAGGAACAGGTTGCCATGGTGGAGCGCAGGAACACCCTCATGATGGCTGAGATTGAGGAAATGAGGGCTGCCCTggaacagacagagagaggccgCAAAGTGGCAGAGCAAGAATTGCTTGATGCCAGTGAACGTGTGCAGCTGCTGCACTCCCAGAATACCAGCCTGATCAACACCAAGAAGAAGCTTGAGAGTGACATCTCTCAGCTCCAAGGTGAAGTTGATGACACTGTCCAAGAAGCAAGAAATGCAGAGGAAAAGGCCAAGAAGGCTATTACTGATGTGAGTAACATGACTAGTATAAGCATTTCCTGCTGCCTTTAA

Function

GO:

id name namespace
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:1990351 transporter complex cellular_component
GO:0034702 ion channel complex cellular_component
GO:0034703 cation channel complex cellular_component
GO:0034704 calcium channel complex cellular_component
GO:0005891 voltage-gated calcium channel complex cellular_component
GO:1902495 transmembrane transporter complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013108 True 2835 mRNA 0.51 14 21270056 21285838

Neighbor

gene id symbol gene type direction distance location
AMCG00013109 NA coding upstream 265 21265190 ~ 21269791 (+)
AMCG00013107 wu:fd14a01,LOC108254800,LOC107571573 coding upstream 53978 21185746 ~ 21216078 (+)
AMCG00013105 NA coding upstream 194297 21029565 ~ 21075759 (+)
AMCG00013104 pts coding upstream 270746 20988853 ~ 20999310 (+)
AMCG00013100 NA coding upstream 289814 20960421 ~ 20980242 (+)
AMCG00013122 LOC108261602,LOC108254796 coding downstream 55172 21341010 ~ 21343727 (+)
AMCG00013123 NA coding downstream 58026 21343864 ~ 21345063 (+)
AMCG00013121 NA coding downstream 64824 21350662 ~ 21359707 (+)
AMCG00013128 LOC106597527,LOC106569817,LOC106606262,LOC106596646,LOC106585883,LOC106596400 coding downstream 76477 21362315 ~ 21362913 (+)
AMCG00013119 LOC106565367,LOC777984 coding downstream 113568 21399406 ~ 21400312 (+)
G42277 NA non-coding upstream 379724 20889675 ~ 20890332 (+)
G42269 NA non-coding upstream 429496 20839589 ~ 20840560 (+)
G42177 NA non-coding upstream 642722 20627094 ~ 20627334 (+)
G42172 NA non-coding upstream 718239 20551260 ~ 20551817 (+)
G42127 NA non-coding upstream 877447 20387684 ~ 20392609 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding downstream 78266 21364104 ~ 21411989 (+)
G42345 LOC777982,LOC104957706 non-coding downstream 186878 21472716 ~ 21508824 (+)
G42347 NA non-coding downstream 213135 21498973 ~ 21503924 (+)
G42350 NA non-coding downstream 242943 21528781 ~ 21600968 (+)
G42448 NA non-coding downstream 862456 22148294 ~ 22148513 (+)
G41978 NA other upstream 2240778 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 2295694 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 3039818 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 4540523 16719355 ~ 16729533 (+)
AMCG00012987 NA other upstream 5478429 15782364 ~ 15791627 (+)
AMCG00013118 LOC106594791 other downstream 193 21286031 ~ 21471560 (+)
AMCG00013126 myhb,LOC108443910 other downstream 85005 21370843 ~ 21421316 (+)
G42344 LOC108412647 other downstream 140822 21426660 ~ 21486808 (+)
G42453 NA other downstream 956591 22242429 ~ 22245790 (+)
AMCG00013147 NA other downstream 962659 22248497 ~ 22260816 (+)

Expression


Co-expression Network