AMCG00013111 (LOC100705928,LOC100710639,LOC102793686,LOC101481850,LOC108254796,LOC106589491,LOC102288653)


Basic Information

Item Value
gene id AMCG00013111
gene name LOC100705928,LOC100710639,LOC102793686,LOC101481850,LOC108254796,LOC106589491,LOC102288653
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21287146 ~ 21289069 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013111
ATGAGTGCGGACGGGGAGATGGCCGTTTTTGGCCCGGCTGCCATATACCTGAGGAagcctgagagggagagaattgAGGCTCAGAACAAACCCTTTGATGCTaaaactgctgtgtttgtgtctgagcCCAAGGAGTTGTACCTTAAAGGTACTCTCCAGAGCAAAGAAGGGGGCAAAGCCACTGTAAAAACAGAGGGAGGCCAAACTCTAACAGTTAAGGAAGATGAAGTCTTCCCCATGAATCCTCCCAAGTTTGATAAAATTGAGGACATGGCGATGCTGACCCACCTCAATGAAGCCTCTGTGCTGTATAACCTCAAAGAGCGTTACGCAGCATGGATGATCTACACCTACTCTGGACTGTTTTGTGTAACTGTGAACCCCTACAAGTGGCTCCCAGTGTACAACCCAGAAGTTGTGACAGCATACAGAGGCAAAAAGCGCATGGAGGCTCCACCACACATCTTCTCAGTTTCTGATAATGCCTATCAGAACATGCTCACTGaTCGTGAAAACCAATCAATCCTGATTACTGGAGAATCTGGTGCTGGAAAGACTGTGAACACGAAACGTGTCATCCAGTACTTTGCGACAATCGCAGTGTCTGGGGAAAAGAAAGCTCCAGAACCTGGCAAAATGCAGGGAACCCTGGAGGATCAAATCATCTCAGCCAACCCTCTGCTGGAGGCTTTTGGTAATGCCAAGACAGTGAGGAATGACAACTCCTCTCGCTTTgGTAAATTCATCAGAATCCATTTTGGAACTACAGGAAAACTAGCTTCTGCTGATATTGAGACTTaTTTGCTGGAGAAGTCCAGAGTAACATTCCAGCTGTCTGATGAAAGGAGCTACCACATCTTTTATCAGATCATGACCAACCACAAGCCTGAGCTTATAGACATGCTTCTGATCACCACCAATCCCTATGACTTCCCTATGATCAGCCAGGGTCAGATCTCTGTGGCCAGCATTGATGACAAAGAGGAGCTGGTTGCCACAGATacTGCCATTGATATTCTGGGCTTTACAAGTGAGGAGAAAACAGGCATCTACAAGCTGACTGGTGCTGTGATGCACCAC

Function

NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013111 True 1080 mRNA 0.47 10 21287146 21289069

Neighbor

gene id symbol gene type direction distance location
AMCG00013117 NA coding downstream 8484 21270349 ~ 21278662 (-)
AMCG00013114 LOC102780693,LOC101068441,LOC108261437,LOC101079795 coding downstream 23664 21248082 ~ 21263482 (-)
AMCG00013106 gas7,LOC106589492 coding downstream 190727 21079606 ~ 21096419 (-)
AMCG00013102 rcvrn coding downstream 301261 20984036 ~ 20985885 (-)
AMCG00013103 LOC104927391,LOC101078514,LOC101475813,LOC100711440 coding downstream 433082 20841618 ~ 20854064 (-)
AMCG00013113 myhz1.1,ns:zf-e68,myhz1.2,LOC108444092,LOC105902796,LOC108254796,LOC108443910,LOC103370565 coding upstream 39131 21328200 ~ 21335131 (-)
AMCG00013110 LOC100705928,LOC102793686,LOC101481850,LOC100710639,LOC102197206,LOC102288653,LOC106589491 coding upstream 47088 21336157 ~ 21338083 (-)
AMCG00013116 ns:zf-e68,LOC106569812,LOC108254801,LOC108261476,LOC108261437,LOC106569813 coding upstream 61390 21350459 ~ 21350814 (-)
AMCG00013115 LOC108412647,LOC100705928,LOC102793686,LOC105910910 coding upstream 62194 21351263 ~ 21375164 (-)
AMCG00013138 LOC103399676,LOC107571695 coding upstream 105207 21394276 ~ 21398255 (-)
G42378 LOC106596905,LOC106577420,LOC106569812 non-coding downstream 77497 21209265 ~ 21209649 (-)
G42376 myhz1.2,myhz1.1,LOC108415768,LOC102780693,LOC105899468 non-coding downstream 91796 21194149 ~ 21195350 (-)
G42278 NA non-coding downstream 396858 20889683 ~ 20890288 (-)
G42242 NA non-coding downstream 612918 20666345 ~ 20674228 (-)
G42136 NA non-coding downstream 882061 20401708 ~ 20405085 (-)
G42382 NA non-coding upstream 51901 21340970 ~ 21427716 (-)
G42383 NA non-coding upstream 57406 21346475 ~ 21346834 (-)
G42386 NA non-coding upstream 110575 21399644 ~ 21400158 (-)
G42440 dnah9 non-coding upstream 604555 21893624 ~ 21905597 (-)
G42450 NA non-coding upstream 860512 22149581 ~ 22149792 (-)
AMCG00013090 NA other downstream 741335 20531194 ~ 20545811 (-)
G42076 NA other downstream 1304266 19980336 ~ 19982880 (-)
AMCG00013070 NA other downstream 2215728 19068245 ~ 19071418 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other downstream 2264368 18977060 ~ 19022778 (-)
AMCG00013051 NA other downstream 3022303 18258089 ~ 18264843 (-)
AMCG00013112 myhb,LOC106527115,LOC107667337,LOC107721187,LOC108440470 other upstream 11024 21300093 ~ 21311306 (-)
G42371 myhc4,LOC108412647,LOC107723326,LOC108415768,LOC105910910 other upstream 47148 21336217 ~ 21517177 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other upstream 47998 21337067 ~ 21375763 (-)
G42375 LOC108261476,LOC105030495,LOC108261437,LOC108254801,LOC108254800,LOC108417520 other upstream 61591 21350660 ~ 21360107 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other upstream 122870 21411939 ~ 21422118 (-)

Expression


Co-expression Network