AMCG00013114 (LOC102780693,LOC101068441,LOC108261437,LOC101079795)


Basic Information

Item Value
gene id AMCG00013114
gene name LOC102780693,LOC101068441,LOC108261437,LOC101079795
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21248082 ~ 21263482 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013114
ATGAGTGCGGACGGGGAGATGGCCGTTTTTGGCCCGGCTGCCACATACCTGAGGAagcctgagagggagagaattgAGGCTCAGAACAAACCATTTGATGCTaaaactgctgtgtttgtgtctgagcCCAAGGAGTTGTACCTTAAAGGTACTCTCCAGAGCAAAGAAGGGGGCAAAGCCACTGTAAAAACAGAGGGAGGCCTAACTCTAACAGTTAAGGAAGATGAAATCTTCCCAATGAATCCTCCCAAGTATGATAAAATTGAGGACATGGCGATGATGACCCACCTCAGTGAAGCAACTGTGCTGTATAACCTCAAAGAGCGTTATGCAGCATGGATGATCTATACCTACTCTGGGCTGTTTTGTGTAACTGTGAACCCCTACAAGTGGCTCCCAGTGTACAATGCAGAAGTTGTGACAGCGTACAGAGGCAAAAAGCGCATGGAGGCTCCACCACACATCTTCTCAGTTTCTGATAGTGCTTATCAGAACATGCTCACTGATCGTGAAAACCAGTCAATCCTGATAACTGGAGAATCTGGTGCTGGAAAGACTGTGAACACGAAACGTGTCATCCAATACTTTGCGACAATCGCAGTGTCATCTGACAAGAAGAAAGATGTACAGCCTGGCAAGATAAAAGGAACCCTGGAGGATCAAATCATCTCAGCTAACCCTCTGCTGGAGGCTTTTGGTAACGCCAAGACAGTGAGGAATGACAACTCCTCTCGCTTTgGTAAATTCATCAGAATCCATTTTGGAACTACAGGAAAACTAGCTTCTGCTGATATTGAGACTTactTGTTAGAGAAGTCCAGAGTAACATTCCAGCTGTCTGACGAAAGGAGTTACCACATCTTTTATCAGATCATGACCAACCACAAGCCAGAGCTTATTGACATGCTTCTGATCACCACCAATCCCTATGATTACCCTATGATCAGCCAGGGTCAGATCACTGTGGCCAGCATTGATGACAAAGAGGAGCTGGATGCCACAGATgTAAACAATTCTGTTAATGCTCTGGCTAAGTCTATATATGAGAAAATGTTCTTGTGGATGGTCATTCGTATCAACCAGATGTTGGACACAAAACAATCAAGACAGTTCTTCATTGGTGTCCTGGACATTGCAGGATTTGAGATTTTTGATGTGAataGTGGAAAGAAGGGTGCCAAGAAGAAGGGTGGCTCATTTCAGACAGTGTCTGCTCTCTTCAggGAGAACTTGGGCAAGCTGATGACCAACTTGAGGAGCACACATCCTCACTTTGTGCGCTGCTTGATTCCTAATGAATCAAAGACACCAGAGGGTCAGTTCATTGACAGCAAGAAAGCTTCAGAGAAGCTCTTGGGATCCATTGATGTAGATCACACTCAGTATAAATTTGGGCACACAAAGGTTTTCTTTAAAGCTGGCCTGCTGGGTACACTTGAGGAGATGCGAGATGATAAACTTGCTAAACTTATTACTAGTACTCAGGCCCTTTGTCGGGGTTTCTTGATGAGAGTGGAGTTCCAACAAATGATGGAAAGAAGAGAGTCGGTTTTCACCATTCAATACAACATCCGCTCATTCATGAATGTGAAACACTGGCCATGGATGAAGCTGTACTTCAAGATCAAGCCACTTCTGAAGAGCGCAGAAACTGAGAAGGAATTTGCCAACATGAAGGAAGAATTTGTGAAGTGCAAGGAAGATCTGAAAAAGGCAGAAGCCAAGAGAAAGGAGCTTGAGGAGAAGATGGTGTCTCTGCTGCAGGAAAATAATGACCTGCTGTTGCAAGTCCAGAAGGACTTTGAAACAAGCCAACTCCTCAGTAAGATTGAGGATGAACAAACTCTGGGTGTTCAGCTGCAGAAGAAGATTAAGGAGCTCCAGGCTCGTATTGAAGAACTGGAGGAAGAAACGGAGGCTGAACGTGCTGCTCGTGCAAAGATTGAGAAGCAGAGGGCTGATCTCTCCAGGGAACTTGAGGAGATCAGTGAAAGGCTTGAAGAGGCTGGTGGTGCCACTTCTGCTCAGATTGAGATGAACAAGAAACGTGAAGCTGAATTCCTGAAGCTCCGCCGCGACCTTGAAGAGTCGACTCTGCAGCACGAGGCCACCGCTGCTGCCCTCCGCAAGAAGCAGGCCGACAGCGTGGCAGAATTAGGAGAACAGATTGACAACCTTCAGCGCGTCAAGCagaagctggagaaggagaagagtgaatacaaaatggaaatcGATGACCTCTCCAGCAACATGGAAGCCATAGCCAAATCCAAGgCTAATCTGGAGAAGATGTGCCGTACTCTGGAGGACCAACTCAGTGAACTCAAGTCTAAGAGTGATGAGAACACACGCCAGATTAATGACCTGAGTACACAAAAAGCAAGACTAAACACAGAAAATGgTGAATTTGCACGCCAACTGGATGAGAAAGAAGCTCTGGTATCCCAACTAACAAGAGGAAAGCAGGCCTACACTCAACAAATTGAAGAGCTGAAAAGGCATATGGAAGAGGAAACCAAGGCTAAGAATGCCCTGGCTCATGCTTTACAATCAGCTCGCCATGACTGTGACCTGCTCCGGGAGCAATatgaggaggagcaggaggccaAGGCTGAACTTCAGCGCGGAATGTCCAAGGCCAACAGTGAAGTGGCTCAGTGGAGAATAAAATACGAAACTGATGCCATCCAGCGCACTGAGGAGCTTGAGGAAGCCAAGAAAAAGCTTGCCCAGCGCTTGCAAGATGCTGAGGAACAAATTGAGGCTATGAACTCCAAGTGCGCCTCTCTGGAAAAGACCAAGCAGAGGCTGCAGGGTGAGGTGGAAGACCTCATGATTGATgtTCTGGCAGAATGGAAGCAGAAGTTTGAGGAGGGCCAGGCAGAGCTGGAGTCAAGTCTAAAAGAAGCTCGCTCTCTCAGCACTGAGCTTTTCAAGATGAAGAACTCCTATGAAGAGGCTCTGGATCATCTTGAGACCCTTAAGCGCGAGAACAAGAACTTACAGCAGGAGATCTCAGACCTCACTGAACAGATTGGTGAGAGTGGAAAAACAATTCACGAGCTGGAGAAGGCAAAGAAACAAGCTGAGACAGAGAAGTCTGAATTCCAAACTGCCCTAGAGGAGGCCGAGGCTACACTGGAGCATGAGGAAGCGAAGATCCTTCGTATTCAGCTGGAACTAAACCAAATCAAGTCAGAGATTGACAGAAAGATTGCTGAGAAAGATGAGGAGCTTGAGCAGAACAAGAGAAACAGCCAAAGGATTATTGACCAAATGCAAAGTAGTCTTGAGGCCGAGATCAGGAGCAGGAATGATGCCCTGAGAGTGAAGAAAAAGATGGAGGGAGATCTCAATGAGATGGAAATCCAGCTGAGCCACGCCAACCGCCAGGCTGCCGAGGCCCAGAAACAACTGAGGAACGTCCAAGGACAACTCAAGGATGCCCAACTGCACCTGGATGATGCTATCAGGGGACAGGAGGACATGAAGGAACAGGTTGCCATGGTGGAGCGAAGGAACACCCTCATGATGGCTGAGATTGAGGAAATGAGGGCTGCCCTggaacagacagagagagcacgCAAATTGGCGGAGCAAGAATTGCTTGATGCCAGTGAACGTGTGCAGCTGCTGCACTCCCAGAATACCAGCCTGATCAACACAAAGAAGAAGCTTGAGACTGACATTGCTCAGCTCCAAGGTGAAGTTGATGACACCATCCAGGAAGCAAGGAATGCAGAAGAAAAGGCCAAGAAGGCTATTACTGATGCTGCTATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACCAGCTCTCACCTGGAGAGAATGAAGAAGAACCTGGAGGTCACAGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCAATGAAGGGTGGAAAGAAGCAGCTCCAGAAACTGGAGGCCAGGGTGCGTGAGCTGGAAAATGAACTGGAAGCCGAGCAACGACGTGGAGCCGATGCCATTAAAGGTCTCCGCAAATATGAGAGAAGAGTCAAGGAGCTCACCTACCAGGCTGAGGAGGACAAGAAGAATGTGAACAGACTCCAGGATCTGGTTGACAAGCTGCAGCTCAAAGTGAAGGCTTACAAGAGACAGGCTGAAGAAGCTGAGGAACAAGTCAATACCCATCTCTCCAAGTTCAGGAAGGCACAGCATGAGCTGGAAGAATCTGAGGAGCGTGCAGACATCGCTGAATCCCAGGTCAACAAGCTGAGAATCAAGAGCCGTGAAATGACGAAggtcAAAGAAGGAGAATGAAGGAAAACCAAGTACATGTACCGAAAGGATTCATACAATATGAATCATATACTCTAAACGTTTCATTCAGCTCTTGATAAAAAGTAGTCTACTTGCATCCTA

Function

NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0032982 myosin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0005516 calmodulin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013114 True 4395 mRNA 0.48 31 21248082 21263482

Neighbor

gene id symbol gene type direction distance location
AMCG00013106 gas7,LOC106589492 coding downstream 151663 21079606 ~ 21096419 (-)
AMCG00013102 rcvrn coding downstream 262197 20984036 ~ 20985885 (-)
AMCG00013103 LOC104927391,LOC101078514,LOC101475813,LOC100711440 coding downstream 394018 20841618 ~ 20854064 (-)
AMCG00013097 LOC103366163,LOC100708876,LOC103153053 coding downstream 488080 20747489 ~ 20760002 (-)
AMCG00013096 mprip,LOC105888873,LOC106589502 coding downstream 513813 20685271 ~ 20734269 (-)
AMCG00013117 NA coding upstream 6867 21270349 ~ 21278662 (-)
AMCG00013111 LOC100705928,LOC100710639,LOC102793686,LOC101481850,LOC108254796,LOC106589491,LOC102288653 coding upstream 23664 21287146 ~ 21289069 (-)
AMCG00013113 myhz1.1,ns:zf-e68,myhz1.2,LOC108444092,LOC105902796,LOC108254796,LOC108443910,LOC103370565 coding upstream 64718 21328200 ~ 21335131 (-)
AMCG00013110 LOC100705928,LOC102793686,LOC101481850,LOC100710639,LOC102197206,LOC102288653,LOC106589491 coding upstream 72675 21336157 ~ 21338083 (-)
AMCG00013116 ns:zf-e68,LOC106569812,LOC108254801,LOC108261476,LOC108261437,LOC106569813 coding upstream 86977 21350459 ~ 21350814 (-)
G42378 LOC106596905,LOC106577420,LOC106569812 non-coding downstream 38433 21209265 ~ 21209649 (-)
G42376 myhz1.2,myhz1.1,LOC108415768,LOC102780693,LOC105899468 non-coding downstream 52732 21194149 ~ 21195350 (-)
G42278 NA non-coding downstream 357794 20889683 ~ 20890288 (-)
G42242 NA non-coding downstream 573854 20666345 ~ 20674228 (-)
G42136 NA non-coding downstream 842997 20401708 ~ 20405085 (-)
G42372 LOC105910910,LOC103366176,LOC777984,LOC100705928 non-coding upstream 23838 21287320 ~ 21310348 (-)
G42382 NA non-coding upstream 77488 21340970 ~ 21427716 (-)
G42383 NA non-coding upstream 82993 21346475 ~ 21346834 (-)
G42386 NA non-coding upstream 136162 21399644 ~ 21400158 (-)
G42440 dnah9 non-coding upstream 630142 21893624 ~ 21905597 (-)
AMCG00013090 NA other downstream 702271 20531194 ~ 20545811 (-)
G42076 NA other downstream 1265202 19980336 ~ 19982880 (-)
AMCG00013070 NA other downstream 2176664 19068245 ~ 19071418 (-)
AMCG00013071 rab37,LOC105012908,LOC106606976,LOC105901728,LOC108439461,LOC107746753,LOC107715539,LOC103393210,LOC108242943,LOC101475770,LOC108278300 other downstream 2225304 18977060 ~ 19022778 (-)
AMCG00013051 NA other downstream 2983239 18258089 ~ 18264843 (-)
AMCG00013112 myhb,LOC106527115,LOC107667337,LOC107721187,LOC108440470 other upstream 36611 21300093 ~ 21311306 (-)
G42371 myhc4,LOC108412647,LOC107723326,LOC108415768,LOC105910910 other upstream 72735 21336217 ~ 21517177 (-)
G42381 LOC102793686,LOC103366176,LOC105910910 other upstream 73585 21337067 ~ 21375763 (-)
G42375 LOC108261476,LOC105030495,LOC108261437,LOC108254801,LOC108254800,LOC108417520 other upstream 87178 21350660 ~ 21360107 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other upstream 148457 21411939 ~ 21422118 (-)

Expression


Co-expression Network