AMCG00013115 (LOC108412647,LOC100705928,LOC102793686,LOC105910910)


Basic Information

Item Value
gene id AMCG00013115
gene name LOC108412647,LOC100705928,LOC102793686,LOC105910910
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21351263 ~ 21375164 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013115
ATGAGTACGGACGCGGAGATGGCTGTTTTTGGCCCGGCTGCCATATACCTGAGGAagcctgagagggagagaatagAAGCACAAAGCAGACCATTTGATGCCAAAACTGCCTGCTATGTAACTGATGTCAAGGAGCTGTACGTCAAAGGTGTTCTCCAAAGTAAAGAAGGGGGCAAAGCCACTGTCAAGACTGAGGCTGGCCAAACTGTCACAGTCAAGGAGGATGACGTCTTCCCAATGAATCCTCCCAAGTACGACAAAATTGAGGACATGGCGATGATGACCCACCTGAATGAAGCCTCTGTGCTGTATAACCTCAAAGAGCGTTACGCAGCATGGATGATTTAcACCTATTCTGGGCTGTTTTGTGCAACGGTGAATCCCTACAAGTGGCTCCCAGTGTACAATCAAGAAGTTGTGACAGCATATAGAGGCAAAAAGCGCATGGAGGCTCCACCACACATCTTCTCTGTCTCTGATAATGCCTATCAGAACATGCTCACTgatcGTGAAAACCAGTCAATCCTGATTACTGGAGAATCTGGTGCTGGAAAGACTGTGAACACGAAACGTGTCATCCAGTACTTTGCGACAATCGCAGTGTCCGGGGACAAAAAGAAGGAGACACAGCCTGGAAAAATACAGGGAACCCTGGAGGATCAAATAATCTCAGCCAACCCTCTGCTGGAGGCTTTCGGTAACGCCAAGACAGTGAGGAATGACAACTCCTCTCGCTTTGGTAAATTCATCAGAATTCACTTCGGAAGCACAGGAAAACTGGCTTCTGCTGACATTGAGACTTACTTGCTGGAGAAGTCCAGAGTAACATTCCAGCTGTCTGATGAAAGGAGCTACCACATCTTTTATCAGATCATGACCAACCACAAGCCAGAGCTCATTGATATGCTTCTGATCACAACCAATCCCTATGACTTCCCTATGATCAGCCAGGGTCAGATTACTGTGGCCAGCATAGATGACAAAGAGGAGCTGGTTGCCACAGATGTCAACAATGCAGTTGGTGCCCTGTCCAAATCAGTCTATGAGAAATTGTTCTTGTGGATGGTTGTCCGCATAAACCAGATGCTGGATACCAAGCAGTCCAGACAGAGCTACATTGGTGTGCTGGATATTGCTGGATTTGAGATCTTTGATAGTGGAAAGAAGGGTGCCAAGAAGAAGGGTGGCTCCTTTCAGACGGTGTCTTGTCTCTTCAGgGAGAACTTGGGCAAGCTGATGACCAACTTGAGGAGCACACATCCTCACTTTGTGCGTTGCTTGATTCCCAATGAATCGAAGACACCAGGTACTGTCAACATGCTTTACATAAACAAGAAATGTTCGGAGAAGCTCTTGGCATCCATTGATGTAGACCAAACTCAGTATAAATTTGGACACACTAAGGTGTTCTTCAAAGCTGGTCTGCTGGGTACACTTGAGGAGATGCGAGATGAAAAACTGGCCGCGCTCATCACTAACACGCAGGCTCTTTGCCGTGGCTTCCTCATGAGAAAGGAATTTGTGAAGATGATGGAAAGAAGAGAGTCCATCTTCTCCATCCAATACAATATCCGCTCATTCATGAATGTGAAACACTGGCCATGGATGAAGCTATACTTCAAGATCAAGCCACTTCTGAAGAGTGCAGAATCAGAGAAGGAAATGGCCAACATGAAGGAAGAATTTACCAAGTGCAAGGAAGATCTGGCAAAGGCAGAAGCCAGGAAAAAGGACCTTGAAGAGAAAATGGTATCTCTAATGCAGGAGAAGAATGACCTGCTGCTACAAGTCCAATCTctTGAGGGATCACTGGAGCAAGAGAAGAAAGTCCGAATGGACCTTGAGAGGTCCAAGAGAAAGCTGGAGGGTGATCTGAAACTAGCCCAGGAATCCATAATGGATctggaaaatgacaaacaacagTCAGATGAAAAAATCAAGAAGAAGGACTTTGAAACCAGTCAGCTTCTTAGCAAGATTGAAGATGAACAAGTTCTGGGTGCTCAGCTGCAGAAGAAGATTAAGGAGCTCCAGGCTCGCATTGAGGAACTGGAAGAGGAAATTGAGGCTGAACGTGCTGCTCGTGCAAAGATTGAGAAGCAGAGGGCTGATCTCTCCAGGGAACTTGAGGAGATCAGTGAAAGGCTTGAAGAAGCTGGTGGTGCCACTTCTGCTCAGATTGAGATGAACAAGAAACGTGAAGCTGAGTTCCAGAAGCTCCGCCGCGACCTTGAAGAGTCGACTCTGCAGCACGAGGCCACCGCTGCTGCCCTCCGCAAGAAGCAGGCCGACAGCGTGGCAGAATTAGGAGAACAGATTGACAACCTTCAGCGGGTCAAGCAGAAGCTGGAGAAGGAAAAGAGcgaatacaaaatggaaatcGATGACCTCTCCAGCAATATGGAGTCTGTAGCCAAGTCTAAGGCTAATCTGGAGAAGATGTGCCGTACTCTGGAGGACCAACTCAGTGAACTCAAGGCTAAGAGTGATGAAAACACACGCCAGATAAATGACCTCAGTGGTCAAAAAGCACGTCTGCAAACTGAGAATGGTGAATTTGCACGCCAACTGGAAGAGAAAGAAGCTATGGTATCCCAACTGACAAGAGGGAAACAGGCCTATACTCAACAAATTGAGGAGTTGAAGAGGCATATGGAAGAGGAAACCAAGgccAAGAGTGCCCTGGCTCATGCTTTACAATCAGCTCGCCATGACTGTGACCTGCTCCGGGAGCAATatgaggaggagcaggaggccaAGGCTGAGCTTCAGCGTGGAATGTCTAAGGCCAACAGTGAAGTGGCTCAGTGgagaacaaaatatgaaactgaTGCCATCCAGCGCACTGAGGAGCTTGAGGAAGCCAAGAAAAAGCTTGCTCAGCGCCTGCAAGATGCTGAGGAACAGATTGAGGCTGTGAACTCCAACCATGCCAACCGCCAGGCTGCCGAGGCCCAGAAACAACTGAGGAACATCCAAGGACAACTCAAGgatGCCCTATTGCACCTGGATGATGCTCTTAGAGGACAGGAGGACATGAAGGAACAGGTTGCCATGGTGGAGCGCAGGAACACCCTCATGATGGCTGAGATTGAGGAAATGAGGGCTGCCCTggaacagacagagagagcacgCAAAGTGGCTGAACAGGAACTGGTTGACACCAGTGAGCGTGTGCAGCTGCTGCACTCCCAGaataCAAGTCTTATTAACACCAAGAAGAAGCTTGAGAGTGACATTGCTCAACTACAAGGTGAAGTTGATGACACCATCCAGGAAGCAAGAAATGCAGAAGAAAAGGCCAAGAAGGCAATTACTGATGCTGCTATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACCAGCTCTCACCTGGAGAGAATGAAGAAGAACCTGGAGGTCACAGTGAAGGACCTGCAGCACCGTCTGGATGAGGCTGAGCAGCTGGCAATGAAGGGTGGAAAGAAGCAGCTCCAGAAACTGGAGGCCAGGGTGCGTGAGCTGGAGAATGAGTTTGAAGCTGAACAAAGACGTGGAGCTGAAGCCATTAAAGGAGTCCGTAAATATGAGAGAAGAGTCAAGGAGCTCTCCTACCAGGCTGAGGAGGACAAGAAGAATGTGAACAGACTCCAGGATCTGGTTGACAAGCTGCAGCTCAAAGTGAAGGCTTACAAGAGACAGGCTGAGGAGGCTAGCATTCACGAGCTGGAGAAGGCAAAGAAGCAGGTGGAGACAGAAAAGTCTGAAATTCAAATTGCACTGGAAGAGGCTGAGGATGCCCAACTGCACCTTGATGATGCTCTTAGAGGACAGGAGGACATCAAGGAACAGGTTGCCATAGTGGCTGAGACTGAGGAAATGAGGGCTGCCCTggaacagacagagagaggccgCAAAGTGGCTGAACAGGAACTGGTTGATGCCAGTGAGCGTGTGCAGCTGCTGCACTCAGgttga

Function

NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013115 True 3957 mRNA 0.49 30 21351263 21375164

Neighbor

gene id symbol gene type direction distance location
AMCG00013116 ns:zf-e68,LOC106569812,LOC108254801,LOC108261476,LOC108261437,LOC106569813 coding downstream 449 21350459 ~ 21350814 (-)
AMCG00013110 LOC100705928,LOC102793686,LOC101481850,LOC100710639,LOC102197206,LOC102288653,LOC106589491 coding downstream 13180 21336157 ~ 21338083 (-)
AMCG00013113 myhz1.1,ns:zf-e68,myhz1.2,LOC108444092,LOC105902796,LOC108254796,LOC108443910,LOC103370565 coding downstream 16132 21328200 ~ 21335131 (-)
AMCG00013111 LOC100705928,LOC100710639,LOC102793686,LOC101481850,LOC108254796,LOC106589491,LOC102288653 coding downstream 62194 21287146 ~ 21289069 (-)
AMCG00013117 NA coding downstream 72601 21270349 ~ 21278662 (-)
AMCG00013138 LOC103399676,LOC107571695 coding upstream 19112 21394276 ~ 21398255 (-)
AMCG00013136 LOC107571695,LOC108418072 coding upstream 76868 21452032 ~ 21454895 (-)
AMCG00013132 myhz1.1,ns:zf-e68,myhz1.2,myhz2,myhc4 coding upstream 93865 21469029 ~ 21474368 (-)
AMCG00013134 LOC105910910,LOC107723326,LOC103366176,LOC108412647,LOC100705928 coding upstream 113117 21488281 ~ 21492981 (-)
AMCG00013139 NA coding upstream 152109 21527273 ~ 21529046 (-)
G42383 NA non-coding downstream 4429 21346475 ~ 21346834 (-)
G42372 LOC105910910,LOC103366176,LOC777984,LOC100705928 non-coding downstream 40915 21287320 ~ 21310348 (-)
G42378 LOC106596905,LOC106577420,LOC106569812 non-coding downstream 141614 21209265 ~ 21209649 (-)
G42376 myhz1.2,myhz1.1,LOC108415768,LOC102780693,LOC105899468 non-coding downstream 155913 21194149 ~ 21195350 (-)
G42278 NA non-coding downstream 460975 20889683 ~ 20890288 (-)
G42386 NA non-coding upstream 24480 21399644 ~ 21400158 (-)
G42440 dnah9 non-coding upstream 518460 21893624 ~ 21905597 (-)
G42450 NA non-coding upstream 774417 22149581 ~ 22149792 (-)
G42544 NA non-coding upstream 1199394 22574558 ~ 22574827 (-)
G42553 NA non-coding upstream 1330902 22706066 ~ 22706337 (-)
AMCG00013112 myhb,LOC106527115,LOC107667337,LOC107721187,LOC108440470 other downstream 39957 21300093 ~ 21311306 (-)
G42366 myhz2,LOC106598369,LOC104955241 other downstream 49842 21252107 ~ 21301421 (-)
AMCG00013090 NA other downstream 805452 20531194 ~ 20545811 (-)
G42076 NA other downstream 1368383 19980336 ~ 19982880 (-)
AMCG00013070 NA other downstream 2279845 19068245 ~ 19071418 (-)
AMCG00013137 myhm86-1,LOC107373462,LOC107574740,LOC103143810,LOC108243721,LOC106527115,LOC101079795,LOC108261476,LOC101068441,LOC101071797,LOC101163414 other upstream 36775 21411939 ~ 21422118 (-)
AMCG00013131 LOC101068441,LOC106598369,LOC106594844,LOC106593081,LOC106593408,LOC104955241 other upstream 73165 21448329 ~ 21449954 (-)
AMCG00013133 wu:fd14a01,LOC101068441,LOC101079795,LOC103368359,LOC107721187 other upstream 128685 21503849 ~ 21526832 (-)
AMCG00013184 prkar1a,LOC107708993,LOC106606198 other upstream 2451445 23826609 ~ 23839146 (-)
G42749 NA other upstream 2468919 23844083 ~ 23847477 (-)

Expression


Co-expression Network