AMCG00013118 (LOC106594791)


Basic Information

Item Value
gene id AMCG00013118
gene name LOC106594791
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21286031 ~ 21471560 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013118
ATGGCTGAGGAGCTGAAGAAGGAGCAGGACACTAGTGCTCACCTGGAGAGAATGAAGAAGAACCTGGAGCTCGTGGATGGTCTTTCCAGTCTCACCAATCTGTTCAGTGAGAGTTTCAAGATGATCCAGAGCCTCTTCATAGGAGTTCTTCATCTTGAAAAGCTCAGTGCTGAGAGAGCGAGCCTCTTTCTGAGCCGCCTCCAGCTCTGCCTGGCCCTCCTCAAACTTCTGCTTCCATTCTGCAAGGAcctTGGCACCACCAGCCTCTTCAAGCCTTTCACTGATCTCCTCAAGTTCCCTGGAGAGATCAGCCCTCTGCTTCTCAGTCTTTGCACGAGCAGCACGTTCAGCCTCAATTTCTTCTTCCAGTTCCTCAATTCGAGCCTAGAACCAGTGGTGCGTCAGAAGAACTACAgggcaaaagagagagaggagcaagAGAGTGGCCTTGAGGCAGAGCATCAACAGGGCAAAGAGAGTGAAGACCTGGAGAGTGATTGTGAGGAAGAGCACGGAGAGGGCAAAGAGAGTGAAGACCTGGAGAGTGATTGTGAGGAAGAGCACGGAGAGGGCAAAGAGAGTGAAGACCTGGAGAGTGATTGTGAGGAAGAGCACCGAGAGGGCAAAGAGAGTGAAGACCTGGAGAGTGATTGTGAGGAAGAGCACGGAGAGGGCAAAGAGAGTGAAGACCTGGAGAGTGATTGTGAGGAAGAACATCAACTCAGTAAAGAGAGTGAGTTCCTTGACTCTTCTCTCATATTTGCGGACACCTTTAATGGCATCGGCTCCACGTCGTTGCTCGGCTTCCAGTTCATTTTCCAGCTCACGCACCTACAAATTAATCTGCATTTTCTGGAGCTGCTTCTTTCCACCCTTCATTGCCAGCTGCTCAGCCTCATCCAGACGGTGCTGCAGGTCCTTCACTGTGACCTCCAGGTTCTTCTTCATTCTCTCCAGGGCAGCCCTCATTTCCTCAATCTCAGCCATCATGAGGGTGTTCCTGCGCTCAACCATGACAACCTGTTCCTTCATGTCCTCCTGTCCTCTAAGAGCATCATCCAGGTATATGGCAGCCGGGCCAAAAACGGCCATCTCCGCATCTGTACTCATGTGCTGTGGAGTACTTAA
>TU52762
CTGCAAGTTCTTGTTTTCTCGTTTAAGAGTTTCAAGATGATCCAGAGCCTCTTCATAGGAGTTCTTCATCTTGAAAAGCTCAGTGCTGAGAGAGCGAGCCTCTTTCTGAGCCGCCTCCAGCTCTGCCTGGCCCTCCTCAAACTTCTGCTTCCATTCTGCAAGTTCTTGTTCTCGCGTTTAAGAGTCTCAAGATGATCCAGAGCCTCTTCATAGGAGTTCTTCATCTTGAAAAGCTCAGTGCTGAGAGAGCGAGCCTCTTTCTGAGCTGCCTCCAGCTCTGCCTGGCCCTCCTCAAACTTCTGCTTCCATTCTGCC

Function

NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016459 myosin complex cellular_component
GO:0005524 ATP binding molecular_function
GO:0003774 motor activity molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013118 True 1128 mRNA 0.51 10 21286031 21339770
TU52762 False 315 lncRNA 0.50 2 21300608 21471560

Neighbor

gene id symbol gene type direction distance location
AMCG00013108 NA coding upstream 193 21270056 ~ 21285838 (+)
AMCG00013109 NA coding upstream 16240 21265190 ~ 21269791 (+)
AMCG00013107 wu:fd14a01,LOC108254800,LOC107571573 coding upstream 69953 21185746 ~ 21216078 (+)
AMCG00013105 NA coding upstream 210272 21029565 ~ 21075759 (+)
AMCG00013104 pts coding upstream 286721 20988853 ~ 20999310 (+)
AMCG00013120 myhz1.2,myhz1.1,myhc4 coding downstream 4058 21475618 ~ 21481280 (+)
AMCG00013140 wu:fd14a01 coding downstream 4700 21476260 ~ 21481280 (+)
AMCG00013142 LOC108412647 coding downstream 14671 21486231 ~ 21486678 (+)
AMCG00013125 LOC108412647 coding downstream 14671 21486231 ~ 21486693 (+)
AMCG00013127 NA coding downstream 74059 21545619 ~ 21547056 (+)
G42277 NA non-coding upstream 395699 20889675 ~ 20890332 (+)
G42269 NA non-coding upstream 445471 20839589 ~ 20840560 (+)
G42177 NA non-coding upstream 658697 20627094 ~ 20627334 (+)
G42172 NA non-coding upstream 734214 20551260 ~ 20551817 (+)
G42127 NA non-coding upstream 893422 20387684 ~ 20392609 (+)
G42345 LOC777982,LOC104957706 non-coding downstream 1156 21472716 ~ 21508824 (+)
G42347 NA non-coding downstream 27413 21498973 ~ 21503924 (+)
G42350 NA non-coding downstream 57221 21528781 ~ 21600968 (+)
G42448 NA non-coding downstream 676734 22148294 ~ 22148513 (+)
G42449 NA non-coding downstream 678025 22149585 ~ 22149787 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other upstream 7303 21269675 ~ 21278728 (+)
G41978 NA other upstream 2256753 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 2311669 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 3055793 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 4556498 16719355 ~ 16729533 (+)
G42453 NA other downstream 770869 22242429 ~ 22245790 (+)
AMCG00013147 NA other downstream 776937 22248497 ~ 22260816 (+)
AMCG00013198 NA other downstream 2769709 24241269 ~ 24331854 (+)
G42846 NA other downstream 3275932 24747492 ~ 24749395 (+)
G42858 NA other downstream 3296864 24768424 ~ 24770148 (+)

Expression


Co-expression Network