AMCG00013121


Basic Information

Item Value
gene id AMCG00013121
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21350662 ~ 21359707 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013121
TTTCTGGAGCTGCTTCTTTCCACCCTTCATTGCCAGCTGCTCAGCCTCATCCAGACGGTGCTGCAGGTCCTTCACTGTGACCTCCAGGTTCTTCTTCATTCTCTCCAGTGTAATCAACTTCACTTGGAGCTGAGCAATGTCAGTCTCAAGCTTCTTCTTGGTGTAAATAAGACAGTGCAGCAGCTGCACACGCTCACTGGCATCAACCAGTTCCTGTTCAGCCACTTTGcggcctctctctgtctgttccAGGGCAGCCCTCATTTCCTCAGTCTCAGCCACTATGGCAACCTGTTCCTTGATGTCCTCCTGTCCTCTAAGAGCATCATCAAGTTTCTGGAGCTGCTTCTTTCCACCCTTCATTGCCAGCTGCTCAGCCTCATCCAGACGGTGCTGCAGGTCCTTCACTGTGACCTCCAGGTGAGAGCTGGTGTCCTGCTCCTTCTTCAGCTCCTCAGCCATCATAGCAGCCTGAAA

Function

GO:

id name namespace
GO:0001757 somite specification biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0005488 binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013121 True 477 mRNA 0.53 5 21350662 21359707

Neighbor

gene id symbol gene type direction distance location
AMCG00013123 NA coding upstream 5599 21343864 ~ 21345063 (+)
AMCG00013122 LOC108261602,LOC108254796 coding upstream 6935 21341010 ~ 21343727 (+)
AMCG00013108 NA coding upstream 64824 21270056 ~ 21285838 (+)
AMCG00013109 NA coding upstream 80871 21265190 ~ 21269791 (+)
AMCG00013107 wu:fd14a01,LOC108254800,LOC107571573 coding upstream 134584 21185746 ~ 21216078 (+)
AMCG00013128 LOC106597527,LOC106569817,LOC106606262,LOC106596646,LOC106585883,LOC106596400 coding downstream 2608 21362315 ~ 21362913 (+)
AMCG00013119 LOC106565367,LOC777984 coding downstream 39699 21399406 ~ 21400312 (+)
AMCG00013124 LOC103370545,LOC102292730,LOC777984,LOC100705928,LOC102793686,LOC100710639,LOC101481850,LOC102288653 coding downstream 61915 21421622 ~ 21448718 (+)
AMCG00013120 myhz1.2,myhz1.1,myhc4 coding downstream 115911 21475618 ~ 21481280 (+)
AMCG00013140 wu:fd14a01 coding downstream 116553 21476260 ~ 21481280 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding upstream 46449 21256585 ~ 21304213 (+)
G42277 NA non-coding upstream 460330 20889675 ~ 20890332 (+)
G42269 NA non-coding upstream 510102 20839589 ~ 20840560 (+)
G42177 NA non-coding upstream 723328 20627094 ~ 20627334 (+)
G42172 NA non-coding upstream 798845 20551260 ~ 20551817 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding downstream 4397 21364104 ~ 21411989 (+)
G42345 LOC777982,LOC104957706 non-coding downstream 113009 21472716 ~ 21508824 (+)
G42347 NA non-coding downstream 139266 21498973 ~ 21503924 (+)
G42350 NA non-coding downstream 169074 21528781 ~ 21600968 (+)
G42448 NA non-coding downstream 788587 22148294 ~ 22148513 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other upstream 71934 21269675 ~ 21278728 (+)
G41978 NA other upstream 2321384 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 2376300 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 3120424 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 4621129 16719355 ~ 16729533 (+)
AMCG00013126 myhb,LOC108443910 other downstream 11136 21370843 ~ 21421316 (+)
G42344 LOC108412647 other downstream 66953 21426660 ~ 21486808 (+)
G42453 NA other downstream 882722 22242429 ~ 22245790 (+)
AMCG00013147 NA other downstream 888790 22248497 ~ 22260816 (+)
AMCG00013198 NA other downstream 2881562 24241269 ~ 24331854 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_030204 NA non-coding NC_007116.7 CM002889.2 32260163 ~ 32264060 (+)