AMCG00013122 (LOC108261602,LOC108254796)


Basic Information

Item Value
gene id AMCG00013122
gene name LOC108261602,LOC108254796
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030125.1
NCBI id CM030125.1
chromosome length 49972098
location 21341010 ~ 21343727 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00013122
ATGAGTGCGGACGGGGAGATGGCCGTTTTTGGCGAGGCTGCCATATATCTGAGGAagcctgagagggagagaattgAGGCTCAGAACAAACCCTTTGATGCTaaaactgctgtgtttgtgtctgagcCCAAGGAGTTGTACCTTAAAGGTATTCTCCAAAGCAAAGAAGGGGGCAAAGCCATTGTAAAAACTGACGGAGGCCAAACTCTAACAGTTAAGGAAGATGAAGTCTTCCCCATGAATCCTCCCAAGTTTGATGAAATTGAGGACATGGCGATGATGACCCACCTCAATGAAGCCTCTGTGCTGTATAACCTCAAAGAGCGTTACGCAGCATGGATGATCTACGTGAAAAACCTGACTGAAGAGATGGTCACTCAGGCTGAGTTCCAGAAGCTCCGCCGCGACCTTGAAGAGTCGACTCTGCAGCACGAGGCCACcactgctgccctctgcaagaagcAGGCCGACAGCGTGGCAGAATCAGGAGAACAGATTGACAACCTTCAGCGAGTCAAGCAGAAGCTGGAGAAGGAAAAGagtgaatacaaaatggaaatcGATGACCTCCCCAGCAACATGGAGTCTGTAGCCAAGTCTAAGGCTAATCTGGAGAAGATATGTCGTACTCTAGAAGACCAGCTTAGTGAATTTTCTCGTCAGCTGGAAGAGAAAGAAACTCTCGTATCCCAGTTGACAAGAGGAAAACAGGCTAATACTCAGCAAATTGAGGAGCTTAAGAGGCAAATGGAAGAGGAAGTAAAGAATGCCCTGTCTCATGCTTTACAATCAATTGAGGCTATGAACTCCAAGTGTGCCTCTCTGGAAAAGACCAAGCAGAGGCTTCAGGGTGAGGTGGAAGACCTCATGATTTATgTCCTTGCAGAATGGAAGCAGAAGTTTGAGGAGGGCCAGGCAGAGCTGGAGGCGGCTCAGAAAGAGGCTCGCTCTCTCAGCACTGAACTTTTCAAGATGAAGAACTCCTATGAAGAGGCTCTGGATCATCTTGAAACTCTTAAACGAGAAAACAAGAACTTGCAGCAGGAGATCTCAGACCTCACTGAACATATTGGTGAGACTAGAAAGACCATCCACGAGCTGGAGAAGGCAAAGAAACAAGCAGAGACAGAAAAGTCTGAAATCCAGACTGCCCTGGAGGAGGCTGAGGCTTCACTGGAGCATGAGGAGTCCAAGATCCTTCGTGTCCAGATGGAACTGAACCAGATCAAATCAGAAGTGGATAGAAAGATTGCTGAGAAGGATGAGGAGCTTGAGCAGCTGAAGAGAAACAACCAGAGAATTGTTGACCAAATGCAGAGCGCTCTTGATTCTGAGGTCAGGAGCAGGAATGATGCCCTGAGAGTGAAGAAGAAGATGGAGGGAGATCTCAATGAGATGGAAATCCAGTTGAGCCATGCCAACTGTTAG

Function

NR:

description
PREDICTED: myosin heavy chain, fast skeletal muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00013122 True 1428 mRNA 0.48 9 21341010 21343727

Neighbor

gene id symbol gene type direction distance location
AMCG00013108 NA coding upstream 55172 21270056 ~ 21285838 (+)
AMCG00013109 NA coding upstream 71219 21265190 ~ 21269791 (+)
AMCG00013107 wu:fd14a01,LOC108254800,LOC107571573 coding upstream 124932 21185746 ~ 21216078 (+)
AMCG00013105 NA coding upstream 265251 21029565 ~ 21075759 (+)
AMCG00013104 pts coding upstream 341700 20988853 ~ 20999310 (+)
AMCG00013123 NA coding downstream 137 21343864 ~ 21345063 (+)
AMCG00013121 NA coding downstream 6935 21350662 ~ 21359707 (+)
AMCG00013128 LOC106597527,LOC106569817,LOC106606262,LOC106596646,LOC106585883,LOC106596400 coding downstream 18588 21362315 ~ 21362913 (+)
AMCG00013119 LOC106565367,LOC777984 coding downstream 55679 21399406 ~ 21400312 (+)
AMCG00013124 LOC103370545,LOC102292730,LOC777984,LOC100705928,LOC102793686,LOC100710639,LOC101481850,LOC102288653 coding downstream 77895 21421622 ~ 21448718 (+)
G42330 LOC106589491,LOC105023009,LOC103368359,LOC100710639,LOC102784652,LOC102295130 non-coding upstream 36797 21256585 ~ 21304213 (+)
G42277 NA non-coding upstream 450678 20889675 ~ 20890332 (+)
G42269 NA non-coding upstream 500450 20839589 ~ 20840560 (+)
G42177 NA non-coding upstream 713676 20627094 ~ 20627334 (+)
G42172 NA non-coding upstream 789193 20551260 ~ 20551817 (+)
G42331 LOC100710639,LOC102784652,LOC102295130,LOC102192639,LOC101477534,LOC108412652 non-coding downstream 20377 21364104 ~ 21411989 (+)
G42345 LOC777982,LOC104957706 non-coding downstream 128989 21472716 ~ 21508824 (+)
G42347 NA non-coding downstream 155246 21498973 ~ 21503924 (+)
G42350 NA non-coding downstream 185054 21528781 ~ 21600968 (+)
G42448 NA non-coding downstream 804567 22148294 ~ 22148513 (+)
G42326 LOC105030495,LOC106938339,LOC103143718,LOC103461378 other upstream 62282 21269675 ~ 21278728 (+)
G41978 NA other upstream 2311732 19025561 ~ 19029278 (+)
AMCG00013068 NA other upstream 2366648 18967429 ~ 18974362 (+)
AMCG00013047 NA other upstream 3110772 18158842 ~ 18230238 (+)
AMCG00013015 NA other upstream 4611477 16719355 ~ 16729533 (+)
AMCG00013126 myhb,LOC108443910 other downstream 27116 21370843 ~ 21421316 (+)
G42344 LOC108412647 other downstream 82933 21426660 ~ 21486808 (+)
G42453 NA other downstream 898702 22242429 ~ 22245790 (+)
AMCG00013147 NA other downstream 904770 22248497 ~ 22260816 (+)
AMCG00013198 NA other downstream 2897542 24241269 ~ 24331854 (+)

Expression


Co-expression Network